FC868653

Overview
NameFC868653
Unique NameFC868653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_VARPS (Glycogen synthase OS=Variovorax paradoxus (strain S110) GN=glgA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.511e-31
Identity = 74/216 (34.26%), Postives = 119/216 (55.09%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDA--STVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            ++++MK G+  +D + TVSP YA+E+ + E +G  LD ++R  G  + GI+N +D + WNP TD  +   Y       M  K   K  LQ ++GL    + P+   + RL EQKG  ++   +   + E  Q+ +LG+G+  +E+   +     P        +N  LAH +  G D  L+PS FEPCGL Q++ ++YG++P+V   GGL DTV +
Sbjct:  206 QVSFMKGGLYFADRLTTVSPTYAREIQTPE-QGFGLDGLLRLRGGVLTGILNAVDDEVWNPATDSALVQGYHTPDGRHMAGKARCKAVLQHQLGLAERPDAPLFILVSRLTEQKGLHLVLGGLDTLLAEGGQLALLGSGEAGLEQAFRERAAAAPRAVSVTIGYNETLAHQLFGGGDVTLVPSLFEPCGLTQMYGLKYGSLPLVRRVGGLADTVVD 420          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_DEIRA (Glycogen synthase OS=Deinococcus radiodurans GN=glgA PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.511e-31
Identity = 89/212 (41.98%), Postives = 122/212 (57.55%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            +N MKAG+  +  V TVSP YAQE+ + +  +G+E  L  +  +  + GI+NG+D   WNP TD  I    D +     K    +AL+ E GL    + P++  + RL +QKG D+L  A+P  +++   ++VLG G   +E  L      +P  A   +  N PLAH I AGA    +PSRFEPCGL QL AMRYGT+PIV  TGGL DTV
Sbjct:  182 LNLMKAGLNFAGHVTTVSPTYAQEITTPQYGEGLEGLLVRLTHEGRLSGILNGLDQDRWNPRTDPDIAAYSDPA----GKAGAVKALRQEFGLD---DAPILATVSRLADQKGMDLLITALPELVRD-WNVVVLGGGDPLLEAALTGWAN-HPRVAFA-SGMNEPLAHRIYAGAHAFAMPSRFEPCGLSQLIAMRYGTLPIVRETGGLADTV 383          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_AGRRK (Glycogen synthase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=glgA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.974e-31
Identity = 83/213 (38.97%), Postives = 121/213 (56.81%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            I ++K G+  +  + TVSP YA E+++ E  G+ L+ +I  R   + GIVNG+D   WNP TD  I   Y AST+ D     K+ ++   GL  D   P+   + RL  QKG D+LA+     +    ++ +LG G   +E  L      +  +    A +N  ++H++ AG D I+IPSRFEPCGL QL+ +RYG VPIVA TGGL DT+ +
Sbjct:  197 IGFLKGGLQTAHALTTVSPSYAGEILTPEF-GMGLEGVIASRAASLHGIVNGIDDGIWNPETDPMIARTYGASTLKDRAINRKQVVE-HFGLDDDDG-PIFCVVSRLTWQKGMDLLASISSEIVAMGGKLAILGAGDAALEGALFAAAGRHRGRVGVSAGYNEAMSHLMQAGCDAIIIPSRFEPCGLTQLYGLRYGCVPIVARTGGLNDTIID 406          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_RHITR (Glycogen synthase OS=Rhizobium tropici GN=glgA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.367e-31
Identity = 78/213 (36.62%), Postives = 121/213 (56.81%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            + ++K G+  +  + TVSP YA+E+++ E  G+ L+ +I  +   + GIVNG+D   WNP TD  I   Y A+T+ + + + +  +    GL  D   P+   + RL  QKG DILA      +    ++ +LG G   +E  L      +  +   V + N P++H++ AG D I+IPSRFEPCGL QL+ +R G +PIVA TGGL DT+ +
Sbjct:  197 VGFLKGGLQTAHALTTVSPSYAEEILTPEF-GMGLEGVIASKAYNLYGIVNGIDADIWNPATDPMIAQTYSAATLKE-RAINRHRVVEHFGLEEDDG-PIFCVVSRLTWQKGMDILAEVASEVVHMGGKLAILGAGDAALEGALFAAAGRHRGRVGVVGRHNEPMSHLMQAGCDAIIIPSRFEPCGLTQLYGLRSGCLPIVARTGGLNDTIID 406          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_RHIE6 (Glycogen synthase OS=Rhizobium etli (strain CIAT 652) GN=glgA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.367e-31
Identity = 79/211 (37.44%), Postives = 120/211 (56.87%), Query Frame = 2
Query:   29 WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            ++K G+  +  + TVSP YA E+++ E  G+ L+ +I  R   + GIVNG+D   WNP TD  +   Y  +T+ +     +    AE     + + P+   I RL  QKG D++A      +    +++VLG+G+  +E  L      +P +      +N P++H++ AG D I+IPSRFEPCGL QL+ +RYG VPIVA TGGL DTV +
Sbjct:  199 FLKGGLQTAHAITTVSPTYADEILTPEF-GMGLEGVIATRIDNLHGIVNGIDTDIWNPATDPVVHTHYGPTTLKNRDENRRSI--AEFFHLDNDDAPIFCVISRLTWQKGMDLVANVADEIVAMGGKLVVLGSGEAALEGALLASASRHPGRIGVSIGYNEPMSHLMQAGCDAIIIPSRFEPCGLTQLYGLRYGCVPIVARTGGLNDTVID 406          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_CHLMU (Glycogen synthase OS=Chlamydia muridarum GN=glgA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.500e-31
Identity = 85/228 (37.28%), Postives = 125/228 (54.82%), Query Frame = 2
Query:   32 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKY------DASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT---GKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTGFQMGS 682
            +K  +  SD V TVSP YA+E++  +    E+ + I  R+  +KGI+NG+D    +P TD ++   Y      D     +AK   K+AL   +GL +D++ P +  I R+ EQKG + +  AI H ++    +I++GT   G+   E    Q  +      R +  ++  LA  I A AD I IPS FEPCGL Q+  MRYGTVP+V +TGGL DTV +G  GF   +
Sbjct:  197 LKGALYCSDFVTTVSPTYAKEILQ-DYSDYEIHDAITARQHHLKGILNGIDYTILDPETDPHLAKNYSKVLFEDPKAFFEAKAENKKALYETLGLSLDKS-PCMCIISRIAEQKGPEFMKQAILHALENAYTLIIIGTCYGGQIHKEFSNLQESLADSPNVRILLTYSDVLARQIFAAADMICIPSMFEPCGLTQMIGMRYGTVPVVRATGGLADTVTDGVNGFSFSN 422          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_CHLTB (Glycogen synthase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=glgA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.722e-30
Identity = 86/224 (38.39%), Postives = 122/224 (54.46%), Query Frame = 2
Query:   32 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDA------STVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT--GKKPMEKQLEQLEILYPE-KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTGF 670
            +K  +  SD V TVSP YA+E++  +    E+ + I  R+  ++GI+NG+D   W P TD  +   Y        S   +AK   K+AL   +GL ++ + P +  I R+ EQKG   +  AI H ++    +I++GT  G +  E+     E L      R +  ++  LA  I A AD I IPS FEPCGL Q+  MRYGTVP+V +TGGL DTVA G  GF
Sbjct:  197 LKGALYCSDFVTTVSPTYAKEILE-DYSDYEIHDAITARQHHLRGILNGIDTTIWGPETDPNLAKNYTKELFETPSIFFEAKAENKKALYERLGLSLEHS-PCVCIISRIAEQKGPHFMKQAILHALENAYTLIIIGTCYGNQLHEEFANLQESLANSPNVRILLTYSDVLARQIFAAADMICIPSMFEPCGLTQMIGMRYGTVPLVRATGGLADTVANGINGF 418          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_CHLT2 (Glycogen synthase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=glgA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.722e-30
Identity = 86/224 (38.39%), Postives = 122/224 (54.46%), Query Frame = 2
Query:   32 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDA------STVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT--GKKPMEKQLEQLEILYPE-KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTGF 670
            +K  +  SD V TVSP YA+E++  +    E+ + I  R+  ++GI+NG+D   W P TD  +   Y        S   +AK   K+AL   +GL ++ + P +  I R+ EQKG   +  AI H ++    +I++GT  G +  E+     E L      R +  ++  LA  I A AD I IPS FEPCGL Q+  MRYGTVP+V +TGGL DTVA G  GF
Sbjct:  197 LKGALYCSDFVTTVSPTYAKEILE-DYSDYEIHDAITARQHHLRGILNGIDTTIWGPETDPNLAKNYTKELFETPSIFFEAKAENKKALYERLGLSLEHS-PCVCIISRIAEQKGPHFMKQAILHALENAYTLIIIGTCYGNQLHEEFANLQESLANSPNVRILLTYSDVLARQIFAAADMICIPSMFEPCGLTQMIGMRYGTVPLVRATGGLADTVANGINGF 418          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_RHOS5 (Glycogen synthase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=glgA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.862e-30
Identity = 76/208 (36.54%), Postives = 120/208 (57.69%), Query Frame = 2
Query:   32 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            +KAG++ +D + TVSP YA EL+  E  G+ L  +I  R   + GI+NG+D   W+P  ++     Y A + + AK   +  L     L V   + ++  + RL  QKG D++   +P FI     + VLGTG   +E  + +LE+ +  +      ++  L+H++ AG D +L+PSRFEPCGL Q++ +RYG +P+VA TGGL DT+
Sbjct:  205 LKAGLVTADHITTVSPTYACELMRPEF-GMGLQGVIAARAGQVSGILNGVDTDIWSPEAEER---PYTARS-LKAKAENRAVLSGAFKLDVPGPLAIL--VSRLTYQKGIDLIPEVLPDFIAAGGGLAVLGTGDAALEGAMRELEVRFSGRVGVRIGYDEGLSHLMFAGGDAVLVPSRFEPCGLTQMYGLRYGAIPVVALTGGLADTI 405          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_CHLTR (Glycogen synthase OS=Chlamydia trachomatis GN=glgA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.862e-30
Identity = 86/224 (38.39%), Postives = 122/224 (54.46%), Query Frame = 2
Query:   32 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDA------STVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT--GKKPMEKQLEQLEILYPEK-ARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTGF 670
            +K  +  SD V TVSP YA+E++  +    E+ + I  R+  ++GI+NG+D   W P TD  +   Y        S   +AK   K+AL   +GL ++ + P +  I R+ EQKG   +  AI H ++    +I++GT  G +  E+     E L      R +  ++  LA  I A AD I IPS FEPCGL Q+  MRYGTVP+V +TGGL DTVA G  GF
Sbjct:  197 LKGALYCSDFVTTVSPTYAKEILE-DYSDYEIHDAITARQHHLRGILNGIDTTIWGPETDPNLAKNYTKELFETPSIFFEAKAENKKALYERLGLSLEHS-PCVCIISRIAEQKGPHFMKQAILHALENAYTLIIIGTCYGNQLHEEFANLQESLANSPDVRILLTYSDVLARQIFAAADMICIPSMFEPCGLTQMIGMRYGTVPLVRATGGLADTVANGINGF 418          
The following BLAST results are available for this feature:
BLAST of FC868653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_VARPS1.511e-3134.26Glycogen synthase OS=Variovorax paradoxus (strain ... [more]
GLGA_DEIRA1.511e-3141.98Glycogen synthase OS=Deinococcus radiodurans GN=gl... [more]
GLGA_AGRRK1.974e-3138.97Glycogen synthase OS=Agrobacterium radiobacter (st... [more]
GLGA_RHITR3.367e-3136.62Glycogen synthase OS=Rhizobium tropici GN=glgA PE=... [more]
GLGA_RHIE63.367e-3137.44Glycogen synthase OS=Rhizobium etli (strain CIAT 6... [more]
GLGA_CHLMU7.500e-3137.28Glycogen synthase OS=Chlamydia muridarum GN=glgA P... [more]
GLGA_CHLTB3.722e-3038.39Glycogen synthase OS=Chlamydia trachomatis (strain... [more]
GLGA_CHLT23.722e-3038.39Glycogen synthase OS=Chlamydia trachomatis (strain... [more]
GLGA_RHOS54.862e-3036.54Glycogen synthase OS=Rhodobacter sphaeroides (stra... [more]
GLGA_CHLTR4.862e-3038.39Glycogen synthase OS=Chlamydia trachomatis GN=glgA... [more]

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Properties
Property NameValue
Genbank descriptionC31003B03EF AbioticL1 Citrus clementina cDNA clone C31003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868653 ID=FC868653; Name=FC868653; organism=Citrus clementina; type=EST; length=713bp
ATAAACCTGTGAGAGGATCAAAATCAACTGGATGAAAGCTGGAATATTAG
AATCAGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTT
TCTGGTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGG
CATTAAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGA
CTGACAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCG
AAGCCTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGA
TAGAAATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAG
GCTCAGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTT
CAGATAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGA
ACAGTTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCA
ATATTCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATT
CCAAGCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTA
TGGAACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGG
CAGAAGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAG
GCTGTGGATCCAG
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