FC868653

Overview
NameFC868653
Unique NameFC868653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1004..1715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_CELJU (Glycogen synthase OS=Cellvibrio japonicus (strain Ueda107) GN=glgA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.457e-42
Identity = 89/214 (41.59%), Postives = 141/214 (65.89%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            ++++MK G+  +D + TVSP YAQE+   E  G  LD +IR  +  + GI+NG+D  EWNP  DK++   Y+  T+ + K   K ALQ  +GL ++ ++P++GFIGRL +QKG D++   +P  ++++ Q++VLG+G    E++L ++   YP++      ++  LAH I AG D  L+PS FEPCGL Q++++RYGT+P+V + GGL DTV E
Sbjct:  200 QMSFMKGGLAFADFITTVSPSYAQEIQLPEH-GYGLDGLIRYRQESLSGILNGIDTDEWNPGKDKHLAATYNRRTLGN-KTKNKLALQETLGLALNADVPLLGFIGRLVDQKGIDLILNQLPLLLEQDCQLVVLGSGFPHYEQRLREVARQYPDRVSVTIGYDEGLAHQIEAGCDIFLMPSIFEPCGLNQMYSLRYGTLPVVHAVGGLKDTVQE 411          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_CLOPE (Glycogen synthase OS=Clostridium perfringens GN=glgA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.903e-42
Identity = 95/211 (45.02%), Postives = 131/211 (62.09%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            +++MK  I  SD +LTVS  YA+E+ +    G  LD ++R+ G  +KGIVNG+D  E+NP  D  I   +   T+ D K L K ALQ E+GLP++ +IP+I  + RL  QKG D++       ++ NVQ+++LGTG    E   + L+ LYP K     KF+  LAH I A +D  L+PS FEPCGL QL A+RYG +PIV  TGGL DT+
Sbjct:  204 MSFMKGAINYSDRILTVSETYAKEIKTPYF-GENLDGLLRERGYALKGIVNGIDYDEFNPSKDSLIAKNFSVKTIED-KVLNKLALQKELGLPINPDIPMISIVSRLTNQKGCDLIVNIANRLLQRNVQLVILGTGDYNYENHFKGLQELYPTKVSANIKFDNGLAHRIYASSDIFLMPSLFEPCGLGQLIALRYGAIPIVRETGGLKDTI 412          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_STRP4 (Glycogen synthase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=glgA PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.246e-42
Identity = 97/230 (42.17%), Postives = 134/230 (58.26%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----AEGF-TGFQMGSFS 688
            +NWMKAGIL ++ V TVSP YA E+++ +  G  LD I++     + GIVNG+D   +NP TD  +   ++    +  K   K  LQ  VGLPV    P++G + RL  QKG D++  ++ H ++E+VQI++LGTG    E        +YP+K      F++ LA  I A  D  L+PSRFEPCGL Q+ AMRYGT+P+V   GGL DTV      EG  TGF   + S
Sbjct:  198 LNWMKAGILYANRVSTVSPSYAHEIMTSQF-GCNLDQILKMESGKVSGIVNGIDADLYNPQTDALLDYHFNQED-LSGKAKNKAKLQERVGLPVRXXXPLVGIVSRLTRQKGFDVVVESLHHILQEDVQIVLLGTGDPAFEGAFSWFAQIYPDKLSTNITFDVKLAQEIYAACDLFLMPSRFEPCGLSQMMAMRYGTLPLVHEVGGLRDTVRAFNPIEGSGTGFSFDNLS 425          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_AZOSE (Glycogen synthase OS=Azoarcus sp. (strain EbN1) GN=glgA PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.246e-42
Identity = 95/227 (41.85%), Postives = 139/227 (61.23%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTGFQMGSFSVD 694
            K++++KAG+  +D ++ VSP YA+E+ + E  G  +  ++  R   + GI+NG+D+  WNP TD ++   YDA T+ D  P  K ALQAE+GL  D +  ++G + RL +QKG D++  A+P  +   VQ+ +LG G    E+   Q     P++   V  F+  LAH I AGAD  ++PSRFEPCGL Q+++ RYGT PIV +TGGLVD+V         G FSVD
Sbjct:  208 KLSFLKAGLYYADRIVAVSPTYAREIRT-EAHGCGMQGLLETRANRLAGILNGIDMDAWNPRTDPHLDTNYDADTLEDKAPN-KRALQAELGLAADDDALLLGMVTRLTDQKGIDLVLDALPELLARPVQLALLGGGDARFEQAWRQRAAARPDRIAAVIGFDERLAHRIEAGADAFVMPSRFEPCGLNQMYSQRYGTPPIVRATGGLVDSV---------GDFSVD 423          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_ANOFW (Glycogen synthase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=glgA PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.246e-42
Identity = 96/231 (41.56%), Postives = 141/231 (61.04%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-------AEGFTGFQMGSFS 688
            +++MK  ++ + ++ TVSP Y +E+ +    G  LD ++R   + + GI+NG+D + +NP  D YI V YD +T+   K + K ALQ    LP + ++PVI  + RL +QKG D++       I E+VQ+I+LGTG+   E+  + + + YP++ R    F+  LAH I AGAD  L+PS+FEPCGL Q+ AMRYG VPIV  TGGL DTV        EG TGF   +F+
Sbjct:  198 VSFMKGALVSAHLITTVSPTYKEEIQTPY-YGERLDGLLRARSSHLVGILNGIDDEIYNPKKDPYIAVPYDVTTIA-RKSINKRALQQHFSLPSEEDVPVIAIVSRLTKQKGLDLVKCVFHEIIAEHVQMIILGTGEWEFEQFFQDMTMTYPDRVRVYIGFSEQLAHQIYAGADMFLMPSKFEPCGLGQMIAMRYGAVPIVRETGGLNDTVQSFNELTKEG-TGFTFKNFN 425          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_MYCMO (Glycogen synthase OS=Mycoplasma mobile GN=glgA PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.239e-42
Identity = 91/211 (43.13%), Postives = 136/211 (64.45%), Query Frame = 2
Query:   26 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRK--TGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKEN-VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            N+MKAGI+ SD+V TVS  Y +E +    +G+ L++++ K  + ++GI+NG+D   +NP  DKYI  KYD S   +AK + K ALQ E+ L  ++ I +IG I RL  QKG D++  ++ + +K+N +Q +VLGTG    E  L+     YP   + + KF+  L+H + AG D  LIPS FEPCGL QL +++YG +PI  +TGGL+DT+
Sbjct:  199 NFMKAGIISSDIVTTVSETYKEE-IKQPMQGMGLESVLNKYNSKLRGIINGLDYDIFNPSIDKYIEAKYDVSNYKEAKLINKIALQKELNLEQNKKIFLIGMISRLANQKGIDLVLNSLWNIVKDNDIQFVVLGTGDVNYESNLKSFGNKYPRNFKFINKFSDELSHKLYAGLDAFLIPSLFEPCGLTQLISLKYGCIPIARATGGLIDTI 408          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_CLONN (Glycogen synthase OS=Clostridium novyi (strain NT) GN=glgA PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.537e-42
Identity = 101/231 (43.72%), Postives = 143/231 (61.90%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-------AEGFTGFQMGSFS 688
            I++MKAGI+ +D + TVSP YA+E+ + E  G  L+ ++  R   + GI+NG+D    NP TD ++  KYD +  ++AK   KE LQ  + LP +R+IP+IG + RLEEQKG +++   I   ++EN+Q++VLGTG +  E   +     YP+K      F+  LA  I A +D  L+PSRFEPCG+ QL A+RYG+VPIV  TGGL DTV        EG  GF   SF+
Sbjct:  199 ISFMKAGIVYADAITTVSPTYAEEIKT-EYYGEGLNGLLQSRSKDLYGILNGIDTDVNNPSTDMFLFDKYDVNN-LEAKARNKEKLQEMLHLPKNRDIPMIGIVARLEEQKGFELIKEVIEELLQENIQLVVLGTGDQRYEDMFKFFAWKYPDKLSANIYFDGGLAQKIYAASDMFLMPSRFEPCGIGQLIALRYGSVPIVRETGGLNDTVFSYNEFTGEG-NGFSFTSFN 426          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_STRS7 (Glycogen synthase OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=glgA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.233e-41
Identity = 93/230 (40.43%), Postives = 130/230 (56.52%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVA------EGFTGFQMGSFS 688
            +NWMKA +L +D V TVSP YA E+ +    G  LD ++R     + GIVNG+D   +NP  D ++   + A   +  K   K+ LQ  +GLPV  ++P+IG + RL +QKG  ++   + H ++++VQ+++LGTG    E         YPEK      F++PLA  I    D  L+PS FEPCGL Q+ AMRYG +PIV   GGL DTVA      +  TGF    FS
Sbjct:  198 LNWMKAAVLYADRVTTVSPSYAHEIQTPAF-GQGLDQVMRMEAGKLSGIVNGIDTDLFNPARDPHLPASFSAED-LSGKAATKQVLQERLGLPVRADVPLIGMVSRLTDQKGFQLVLEELSHILQQDVQLVLLGTGDPDYEAAFSWFAKAYPEKLSANITFDLPLAQQIYGACDLFLMPSAFEPCGLSQMMAMRYGAIPIVHEIGGLKDTVASYNAYEKTGTGFGFDQFS 425          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_RHOBA (Glycogen synthase OS=Rhodopirellula baltica GN=glgA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.233e-41
Identity = 92/216 (42.59%), Postives = 136/216 (62.96%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKEN--VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            ++N++K G++ SD+V TVSP YA E+ + E  G  LD+I++     + GI+NG+D   WNP TD ++   Y      DAK   K ALQAEVGLP D ++P++G IGRL +QKG D++   +   + E    Q +VLG+G   +E+QL +L   +PE+      F+  LAH I A +D  ++PS +EPCGL QL+++RYGT  +V  TGGL DT+ +
Sbjct:  212 QLNFLKTGVVTSDVVSTVSPTYALEIQTPE-YGCGLDSILQGIPQPVAGIINGIDTNIWNPETDPHLKRNYSVVDWADAKIDNKLALQAEVGLPQDPDVPLLGLIGRLADQKGWDLILPVLKQHLAEARPTQWVVLGSGDPKIEEQLRELTEQHPEQLAAYIGFSDALAHRIEASSDMFIMPSHYEPCGLNQLYSLRYGTPCVVTKTGGLADTIVD 426          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_RHOP5 (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=glgA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.748e-41
Identity = 94/213 (44.13%), Postives = 131/213 (61.50%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            I +MKAG+  SD + TVSP YA E+ + E  G+ LD ++R+    + GI+NG+D + WNP TDK I   YD  T + A+   K AL+   GL  + +  +IG I RL  QKG D+L   +P  + E +Q+ +LG G   +E    Q+   +P +   V  ++  LAH+I AGAD +L+PSRFEPCGL QL A+RYG VP+VA  GGL DTV +
Sbjct:  200 IGYMKAGLQLSDRITTVSPAYALEIQAPE-AGMGLDGLLRQRSHHLTGILNGIDEKVWNPATDKRIAATYDVKT-LPARGANKAALRERFGLASETDRLLIGVISRLSWQKGLDLLLETLPLLLSEGIQLALLGAGDAALEAAFRQVAQSHPGQIGVVVGYDEDLAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLSDTVVD 410          
The following BLAST results are available for this feature:
BLAST of FC868653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_CELJU1.457e-4241.59Glycogen synthase OS=Cellvibrio japonicus (strain ... [more]
GLGA_CLOPE1.903e-4245.02Glycogen synthase OS=Clostridium perfringens GN=gl... [more]
GLGA_STRP43.246e-4242.17Glycogen synthase OS=Streptococcus pneumoniae sero... [more]
GLGA_AZOSE3.246e-4241.85Glycogen synthase OS=Azoarcus sp. (strain EbN1) GN... [more]
GLGA_ANOFW3.246e-4241.56Glycogen synthase OS=Anoxybacillus flavithermus (s... [more]
GLGA_MYCMO4.239e-4243.13Glycogen synthase OS=Mycoplasma mobile GN=glgA PE=... [more]
GLGA_CLONN5.537e-4243.72Glycogen synthase OS=Clostridium novyi (strain NT)... [more]
GLGA_STRS71.233e-4140.43Glycogen synthase OS=Streptococcus equi subsp. zoo... [more]
GLGA_RHOBA1.233e-4142.59Glycogen synthase OS=Rhodopirellula baltica GN=glg... [more]
GLGA_RHOP52.748e-4144.13Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]

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Properties
Property NameValue
Genbank descriptionC31003B03EF AbioticL1 Citrus clementina cDNA clone C31003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868653 ID=FC868653; Name=FC868653; organism=Citrus clementina; type=EST; length=713bp
ATAAACCTGTGAGAGGATCAAAATCAACTGGATGAAAGCTGGAATATTAG
AATCAGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTT
TCTGGTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGG
CATTAAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGA
CTGACAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCG
AAGCCTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGA
TAGAAATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAG
GCTCAGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTT
CAGATAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGA
ACAGTTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCA
ATATTCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATT
CCAAGCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTA
TGGAACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGG
CAGAAGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAG
GCTGTGGATCCAG
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