FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_HUMAN (Aminomethyltransferase, mitochondrial OS=Homo sapiens GN=AMT PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.299e-40
Identity = 80/158 (50.63%), Postives = 111/158 (70.25%), Query Frame = 2
Query:  212 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            E L++T L+DFH+A+GGKMV FAGWS+P+QY+DS  +S L+ RQ+ SLFDVSHM    + G D V  +E LV+ D+A L P  GTL++FTNE GG +DD ++T   + H+Y+V NAGC +KDLA ++  ++    +G DV   + D  +LLALQGP A
Sbjct:   31 EVLRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQTKILGSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKDLALMQDKVRELQNQGRDVGLEVLD-NALLALQGPTA 187          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_CANFA (Aminomethyltransferase, mitochondrial OS=Canis familiaris GN=AMT PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.026e-39
Identity = 79/156 (50.64%), Postives = 110/156 (70.51%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            L++T L+DFH+A+GGKMV FAGWS+P+QY+DS ++S L+ R++ SLFDVSHM    + G D V  +E LV+ D+A L P  GTL++FTNE GG  DD ++T   + ++Y+V NAGC DKDLA ++  ++     G DVS  + D  +LLALQGP A
Sbjct:   33 LRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHVDSHLHTRRHCSLFDVSHMLQTKILGCDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGIEDDLIVTSTSEGYLYVVSNAGCWDKDLALMQGKVRELQNMGSDVSLEVVD-NALLALQGPTA 187          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_DICDI (Aminomethyltransferase, mitochondrial OS=Dictyostelium discoideum GN=gcvT PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.948e-38
Identity = 82/166 (49.40%), Postives = 110/166 (66.27%), Query Frame = 2
Query:  188 RRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKG--GDVSWHIHDERSLLALQGP 679
            +R+F+S  E LKKTAL++ H   G KMVPF GW MP+QY   +M+  L+ R+   LFDVSHM  L + GKD V F E +V+AD+  L  G   L+VFTNE GG IDD++IT    D +Y+VVNAGC DKD++HI   +K F +     DVS  + ++ SL+A+QGP
Sbjct:   15 KRYFSSSNE-LKKTALNELHKELGAKMVPFCGWEMPVQYPAGVMKEHLHVRKESGLFDVSHMGQLRIHGKDRVKFFESIVVADLQALPTGHSKLSVFTNEKGGIIDDTMITNA-GDSLYVVVNAGCADKDISHINEKIKEFKSVNPTHDVSMQLLEDLSLIAIQGP 178          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_YEAST (Aminomethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=GCV1 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.420e-31
Identity = 79/172 (45.93%), Postives = 102/172 (59.30%), Query Frame = 2
Query:  176 KTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSI-MESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDH-IYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            K I  + F S    LKKTALHD HV+ GG MVP+AG+SMP+ YK    +ES    R N  LFDVSHM    L G   V FL+++   D   L  G+GTL+V  N  GG +DD++ITK  DD+  Y+V NAGC ++D       +++ +    D  W I + RSLLALQGP A
Sbjct:    5 KKIVFKRFNS---TLKKTALHDLHVSLGGTMVPYAGYSMPVLYKGQTHIESHNWTRTNAGLFDVSHMLQSKLSGPHSVKFLQRVTPTDFNALPVGSGTLSVLLNPQGGVVDDTIITKENDDNEFYIVTNAGCAERDTEFFHDELQNGSTL--DCQWKIIEGRSLLALQGPKA 171          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_SCHPO (Probable aminomethyltransferase, mitochondrial OS=Schizosaccharomyces pombe GN=gcv1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.723e-27
Identity = 65/167 (38.92%), Postives = 105/167 (62.87%), Query Frame = 2
Query:  182 IARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYK-DSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            + R+   + + +LK+T L+D H+  G  +VPFAG+SMP+QYK  +I  S    R++  LFDVSHM    ++G++   +LE +  + +  L P   TL+ FTNE GG IDD++I+K  ++  Y+V NA C +KD A+++ H++++  KG  V       R+L+A+QGP
Sbjct:   10 LKRQSSTAASSSLKRTPLYDLHLKEGATIVPFAGFSMPVQYKGQTISASHKWTREHSGLFDVSHMVQWFVRGENATAYLESITPSSLKELKPFHSTLSAFTNETGGIIDDTIISKQDENTYYIVTNAACSEKDEANLKKHIENW--KG--VELERVQGRALIAIQGP 172          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_THEMA (Aminomethyltransferase OS=Thermotoga maritima GN=gcvT PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.821e-26
Identity = 65/156 (41.67%), Postives = 91/156 (58.33%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +K+T L + HV  G KMV FAGW MP+ Y  SI E  +  R++  +FDVSHM    +KG + V F++ L+  D + L  G    +V  NENGG IDD V+ KV  D   +VVNA   +KD   I++H K+F  +  ++S    D  +L+A QGP A
Sbjct:    1 MKRTPLFEKHVELGAKMVDFAGWEMPLYYT-SIFEEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLITNDFSSLPDGKAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKNFDVEVSNIS----DTTALIAFQGPKA 151          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_THESQ (Aminomethyltransferase OS=Thermotoga sp. (strain RQ2) GN=gcvT PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.985e-25
Identity = 64/156 (41.03%), Postives = 91/156 (58.33%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +K+T L + HV  G KMV FAGW MP+ Y  SI E  +  R++  +FDVSHM    +KG + V F++ L+  + + L  G    +V  NENGG IDD V+ KV  D   +VVNA   +KD   I++H K+F  +  ++S    D  +L+A QGP A
Sbjct:    1 MKRTPLFEKHVELGAKMVDFAGWEMPLYYT-SIFEEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLITNNFSSLPDGKALYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKNFNVEVSNIS----DTTALIAFQGPRA 151          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_THEP1 (Aminomethyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=gcvT PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.592e-25
Identity = 65/156 (41.67%), Postives = 90/156 (57.69%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +K+T L + HV  G KMV FAGW MP+ Y  SI E  +  R++  +FDVSHM    +KG + V F++ L+  D + L  G    +V  NENGG IDD V+ KV  D   +VVNA   +KD   I++H K+F  +      +I D  +L+A QGP A
Sbjct:    1 MKRTPLFEKHVGLGAKMVDFAGWEMPLYYT-SIFEEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLITNDFSSLPDGKAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKNFDVE----ILNISDTTALIAFQGPEA 151          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_THENN (Aminomethyltransferase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=gcvT PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.541e-25
Identity = 62/154 (40.26%), Postives = 92/154 (59.74%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGP 679
            +K+T L++ HVA G KMV FAGW MP+ Y  SI E  +  R++  +FDVSHM  + ++G++ V F+  LV  D + +  G    TV  NE GG +DD V+ ++  +   +VVNA   +KD   I+ H K+F  +  +VS    DE +L+A QGP
Sbjct:    1 MKRTPLYERHVALGAKMVDFAGWIMPLYYS-SIFEEVMAVRKSVGVFDVSHMGEIVVEGQETVDFVNFLVTNDFSAIPEGKAMYTVMCNETGGIVDDLVVYRISHEKAIMVVNAANIEKDYEWIKVHAKNFNVEVRNVS----DETALVAFQGP 149          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_YERPS (Aminomethyltransferase OS=Yersinia pseudotuberculosis GN=gcvT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.866e-24
Identity = 67/156 (42.95%), Postives = 89/156 (57.05%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            K+T L+D HVA G +MV F GW MP+ Y   I E  L  RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHL-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQA 152          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_HUMAN8.299e-4050.63Aminomethyltransferase, mitochondrial OS=Homo sapi... [more]
GCST_CANFA7.026e-3950.64Aminomethyltransferase, mitochondrial OS=Canis fam... [more]
GCST_DICDI5.948e-3849.40Aminomethyltransferase, mitochondrial OS=Dictyoste... [more]
GCST_YEAST2.420e-3145.93Aminomethyltransferase, mitochondrial OS=Saccharom... [more]
GCST_SCHPO4.723e-2738.92Probable aminomethyltransferase, mitochondrial OS=... [more]
GCST_THEMA6.821e-2641.67Aminomethyltransferase OS=Thermotoga maritima GN=g... [more]
GCST_THESQ1.985e-2541.03Aminomethyltransferase OS=Thermotoga sp. (strain R... [more]
GCST_THEP12.592e-2541.67Aminomethyltransferase OS=Thermotoga petrophila (s... [more]
GCST_THENN7.541e-2540.26Aminomethyltransferase OS=Thermotoga neapolitana (... [more]
GCST_YERPS2.866e-2442.95Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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