FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_YERP3 (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gcvT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.866e-24
Identity = 67/156 (42.95%), Postives = 89/156 (57.05%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            K+T L+D HVA G +MV F GW MP+ Y   I E  L  RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHL-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_ALCBS (Aminomethyltransferase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24
Identity = 66/154 (42.86%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +TAL+D H+A GGKMV F GW MPI Y   I E     RQN  +FDVSHM  + + G     +L +L+  DV  + PG    T   N+NGG IDD ++ K +D+   LVVN   R+ DL  +E H     A G  V  H   E ++LA+QGP A
Sbjct:    4 RTALYDAHLAAGGKMVDFGGWDMPINYGSQIEEHHA-VRQNAGVFDVSHMTVVDIAGAGARDYLRQLLANDVDRIDPGRALYTGMLNDNGGVIDDLIVYK-RDNDYRLVVNCATRETDLGWMEKH-----AGGFAVDIHERPELAMLAIQGPKA 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_ANOFW (Aminomethyltransferase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 65/157 (41.40%), Postives = 89/157 (56.69%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSW-HIHDERSLLALQGPLA 685
            L++T L   +   G K + F GW +P+Q+  SI E     R    LFDVSHM    +KGKD V FL+K++  DVA L  G    T+   E+GG++DD ++ K  DDH  LVVNA   +KD A +  H+       GDV   +I ++ + LALQGPLA
Sbjct:    2 LQRTPLFPLYAEYGAKTIDFGGWELPVQFS-SIKEEHEAVRTRAGLFDVSHMGEFEVKGKDSVAFLQKMMTNDVAKLTDGRAQYTLMCYEDGGTVDDLLVYKKADDHYLLVVNAANIEKDFAWLSEHVV------GDVELVNISNDIAQLALQGPLA 151          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_YERPY (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 66/156 (42.31%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_YERPP (Aminomethyltransferase OS=Yersinia pestis (strain Pestoides F) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 66/156 (42.31%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_YERPN (Aminomethyltransferase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 66/156 (42.31%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_YERPG (Aminomethyltransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 66/156 (42.31%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_YERPE (Aminomethyltransferase OS=Yersinia pestis GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 66/156 (42.31%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_YERPB (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 66/156 (42.31%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_YERPA (Aminomethyltransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 66/156 (42.31%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   NE+GG IDD ++  + +D+  LVVN+  RDKDLA I  H + +      V   + D+ +L+A+QGP A
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHF-VRQDAGMFDVSHMTIVDLHGNRTREFLRYLLANDVAKLTQPGKALYTGMLNESGGVIDDLIVYFLSEDYFRLVVNSATRDKDLAWISQHAEPY-----QVEVTVRDDLALIAVQGPQA 152          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_YERP32.866e-2442.95Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_ALCBS3.743e-2442.86Aminomethyltransferase OS=Alcanivorax borkumensis ... [more]
GCST_ANOFW4.888e-2441.40Aminomethyltransferase OS=Anoxybacillus flavitherm... [more]
GCST_YERPY8.338e-2442.31Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_YERPP8.338e-2442.31Aminomethyltransferase OS=Yersinia pestis (strain ... [more]
GCST_YERPN8.338e-2442.31Aminomethyltransferase OS=Yersinia pestis bv. Anti... [more]
GCST_YERPG8.338e-2442.31Aminomethyltransferase OS=Yersinia pestis bv. Anti... [more]
GCST_YERPE8.338e-2442.31Aminomethyltransferase OS=Yersinia pestis GN=gcvT ... [more]
GCST_YERPB8.338e-2442.31Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_YERPA8.338e-2442.31Aminomethyltransferase OS=Yersinia pestis bv. Anti... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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