FC868658

Overview
NameFC868658
Unique NameFC868658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_GEOKA (Aminomethyltransferase OS=Geobacillus kaustophilus GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 61/157 (38.85%), Postives = 87/157 (55.41%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWH-IHDERSLLALQGPLA 685
            LK+T L   +   G K + F GW MP+Q+  SI E     R    LFDVSHM  + ++G+  + FL+KL+  DVA L PG    T+   E+GG++DD +I +  ++   LVVNA   +KD A +  H++      GDV    +  E + LALQGP A
Sbjct:    2 LKRTPLFSVYARCGAKTIEFGGWEMPVQFS-SIKEEHEAVRTRAGLFDVSHMGEIVVRGRGSLAFLQKLMTNDVAKLRPGRAQYTLMCYEDGGTVDDLLIYQKGENDYLLVVNAANTEKDFAWLSGHVE------GDVELQDVSSETAQLALQGPAA 151          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_CLOBM (Aminomethyltransferase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 63/158 (39.87%), Postives = 85/158 (53.80%), Query Frame = 2
Query:  212 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            E LK T L   +   GGK+V FAG+ +P Q+K  + E     R+   LFDVSHM    + GKD   F++ L+  D+  L       T   NE+GG IDD ++ K  +D  +LV+NA  +DKD+  I  H   F  +  DVS    D  + LALQGPLA
Sbjct:    2 EGLKVTPLRGVYEEYGGKIVDFAGYELPTQFKGFLHEHH-TVREKAGLFDVSHMGEAMVTGKDAGKFIQYLMTNDINVLKDNEVLYTFMCNEDGGVIDDLLVYKFAEDEFFLVINASNKDKDVKWIMDHKGDFDVEIADVS----DSIAQLALQGPLA 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_CLOB6 (Aminomethyltransferase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 63/158 (39.87%), Postives = 86/158 (54.43%), Query Frame = 2
Query:  212 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            E LK T L   +   GGK+V FAG+ +P Q+K  + E     R+   LFDVSHM   ++KGKD   F++ L+  D+  L       T   NE+GG IDD ++ K  +D  +LV+NA  +DKD+  I  H   F  +  DVS    D  + LA QGPLA
Sbjct:    2 EGLKVTPLRGVYEEYGGKIVDFAGYELPTQFKGFLHEHH-TVREKAGLFDVSHMGEATVKGKDAQKFVQYLMTNDINVLKDNEVLYTFMCNEDGGVIDDLLVYKFAEDEFFLVINASNKDKDVKWILDHKGDFDVEIVDVS----DSIAQLAFQGPLA 154          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_FLAPJ (Aminomethyltransferase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.331e-21
Identity = 61/156 (39.10%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +K TAL + H + G KMVPFAG++MP+QY+    E  +  R    +FDVSHM    LKG++ +  ++K+   D + L  G    +   N  GG +DD +I K+ D+H  LVVNA   +KD   I +H       G D+  ++ D  SLLA+QGP A
Sbjct:    1 MKNTALTNIHESLGAKMVPFAGYNMPVQYEGVNAEHEI-VRTGVGVFDVSHMGEFFLKGENALALIQKVTSNDASKLVDGKAQYSCLPNNEGGIVDDLIIYKIADNHYMLVVNASNIEKDWNWISSH----NDLGVDMQ-NLSDSYSLLAIQGPKA 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_CHLT3 (Aminomethyltransferase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.331e-21
Identity = 59/156 (37.82%), Postives = 84/156 (53.85%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +K T LH  H   G K+V FAG+ MP+QY D I+      R+   LFDVSHM    +KGK    FL+ +   DV  L  G    ++   E+GG +DD ++ K+ D+H +L+VNA   +KD   ++ H          V  +  DE SL+A+QGP A
Sbjct:    1 MKYTPLHKIHQQLGAKLVDFAGFEMPVQY-DGILVEHKAVREAVGLFDVSHMGEFEVKGKGAKAFLQNMTTNDVESLCDGKAQYSLLLYEDGGVVDDLLVYKIADEHYFLIVNASNIEKDFDWLKQHQPDDEV----VLENRSDELSLIAIQGPKA 151          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_FRAP2 (Aminomethyltransferase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.739e-21
Identity = 57/154 (37.01%), Postives = 82/154 (53.25%), Query Frame = 2
Query:  224 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            KT L++ H+A   KMV F+GWSMPI Y   I E   N R+N  +FDVSHM  + ++GKD   FL  ++  DVA L  G        N   G +DD +  K+  ++  +VVNAG R+ D+A    + +       DV        +++A+QGP A
Sbjct:    3 KTPLYESHLAANAKMVDFSGWSMPINYGSQIQEHN-NVRENCGVFDVSHMLAVDIQGKDAEKFLRHILANDVAKLEAGKAQYGCMLNHEAGIVDDLITYKIDSENFRIVVNAGNRESDVAWFRENSQDL-----DVKITPQQNLAIVAVQGPKA 150          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_CHLCH (Aminomethyltransferase OS=Chlorobium chlorochromatii (strain CaD3) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.739e-21
Identity = 60/157 (38.22%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDER-SLLALQGPLA 685
            +KKTAL+  H  +G K++ F G+ MP+QY   I E     R    LFDVSHM    +KG   + FL+ +   D+A +  G     +    +GG +DD +I ++  D  +L+VNA   DKD A ++ H+  F      V+   H ER SL+ALQGPLA
Sbjct:    1 MKKTALYPCHEQSGAKIIDFGGYLMPVQYAGIIAEHKA-VRSAAGLFDVSHMGNFFVKGSRALEFLQFVTTNDLAKVVDGQAQYNLMLYPSGGIVDDLIIYRMSADTFFLIVNASNADKDFAWLQQHIDQFEG----VTLEDHTERLSLIALQGPLA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_NITOC (Aminomethyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.271e-21
Identity = 61/156 (39.10%), Postives = 84/156 (53.85%), Query Frame = 2
Query:  221 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            K TA+ D H + G ++V FAGW MP+ Y   + E     RQ   +FDVSHM  + LKG+   PFL +L+  +V  L  PGT   +   N  GG IDD ++  + +    +V NAG RDK LA IE+H   F      V      E +++A+QGP A
Sbjct:    3 KHTAIFDLHRSAGARLVDFAGWDMPLHYGSQVAEHQA-VRQGVGIFDVSHMTVIELKGEKVRPFLHQLLANNVDRLTVPGTALYSCMLNTEGGVIDDLIVYLMAEQEFRVVSNAGTRDKVLAWIESHAAPF-----KVQVEERPELAMIAVQGPEA 152          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_THET2 (Aminomethyltransferase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.965e-21
Identity = 59/156 (37.82%), Postives = 90/156 (57.69%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +KKT L++ H+  G +MV FAG+ +P+QY  SI+E  L  R+   +FDVSHM    ++G++ + FL+     D   L  G    ++  NE GG +DD  + ++ ++   +VVNA    KDLAH++A  K F  +  D S    +  +LLALQGP A
Sbjct:    1 MKKTPLYEAHLRLGARMVDFAGYLLPLQYT-SIVEEHLAVRRAVGVFDVSHMGEFLVRGEEALAFLQWATANDAGKLKVGRAQYSMLPNERGGVVDDIYLYRLGEEEYLMVVNAANIAKDLAHLQALAKGFRVELEDAS----ERTALLALQGPKA 151          
BLAST of FC868658 vs. ExPASy Swiss-Prot
Match: GCST_THELT (Aminomethyltransferase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.965e-21
Identity = 60/156 (38.46%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  218 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLA 685
            +++T L++ HV+ G KM+ FAGW MP+QY  SI +     R+N +LFDVSHM  + ++G+D V F++ L+      L  G    TV  NE GG IDD +  +  +    LVVNA   +KD   I    K F     ++S    D+  L+A+QGPL+
Sbjct:    1 MRRTPLYESHVSLGAKMIDFAGWEMPLQYT-SINDEVATVRKNVALFDVSHMGEIFVEGEDTVEFVDYLLTNSFKNLRIGQVMYTVMCNEMGGIIDDLLTYRFGEKQAMLVVNAANIEKDFDWIVNQSKQFNVTVRNLS----DQYGLIAVQGPLS 151          
The following BLAST results are available for this feature:
BLAST of FC868658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
GCST_GEOKA1.019e-2138.85Aminomethyltransferase OS=Geobacillus kaustophilus... [more]
GCST_CLOBM1.019e-2139.87Aminomethyltransferase OS=Clostridium botulinum (s... [more]
GCST_CLOB61.019e-2139.87Aminomethyltransferase OS=Clostridium botulinum (s... [more]
GCST_FLAPJ1.331e-2139.10Aminomethyltransferase OS=Flavobacterium psychroph... [more]
GCST_CHLT31.331e-2137.82Aminomethyltransferase OS=Chloroherpeton thalassiu... [more]
GCST_FRAP21.739e-2137.01Aminomethyltransferase OS=Francisella philomiragia... [more]
GCST_CHLCH1.739e-2138.22Aminomethyltransferase OS=Chlorobium chlorochromat... [more]
GCST_NITOC2.271e-2139.10Aminomethyltransferase OS=Nitrosococcus oceani (st... [more]
GCST_THET22.965e-2137.82Aminomethyltransferase OS=Thermus thermophilus (st... [more]
GCST_THELT2.965e-2138.46Aminomethyltransferase OS=Thermotoga lettingae (st... [more]

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Properties
Property NameValue
Genbank descriptionC31003B08EF AbioticL1 Citrus clementina cDNA clone C31003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868658 ID=FC868658; Name=FC868658; organism=Citrus clementina; type=EST; length=685bp
GNAGCACCGCTCTCTCTGTGTATTCCTGGAGATGCTCTTTCGGGCTCCCA
GATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTATA
TCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCAC
CCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTTG
CCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGTG
GCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTCA
GTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGTA
GTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGAT
TGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTGC
CCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCAA
TTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGTT
GTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATAT
GAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGATG
AGAGATCTCTTCTTGCCCTTCAGGGCCCCCTTGCT
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