FC868662

Overview
NameFC868662
Unique NameFC868662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868662_ssr372 microsatellite FC868662_ssr372:372..389. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9374 contig Ccv1_Contig9374:1..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868662 vs. ExPASy Swiss-Prot
Match: RENI_SHEEP (Renin OS=Ovis aries GN=REN PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.737e-15
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 3
Query:  513 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFLYLAIYI 665
            V L NYLD QYYGEIGIG+PPQ+F V+FDTGS+NLWVPS+KC  LY A  I
Sbjct:   70 VVLTNYLDTQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSPLYTACEI 120          
BLAST of FC868662 vs. ExPASy Swiss-Prot
Match: CATD_CHICK (Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.257e-15
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 3
Query:  519 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFLYLA 656
            L NY+DAQYYGEIGIG+PPQ F+VVFDTGSSNLWVPS  C  L +A
Sbjct:   70 LKNYMDAQYYGEIGIGTPPQKFTVVFDTGSSNLWVPSVHCHLLDIA 115          

HSP 2 Score: 24.2534 bits (51), Expect = 3.257e-15
Identity = 10/21 (47.62%), Postives = 13/21 (61.90%), Query Frame = 2
Query:  647 ISCYLHSRYRARLSRTYTKIG 709
            I+C LH +Y A  S TY + G
Sbjct:  114 IACLLHHKYDASKSSTYVENG 134          
BLAST of FC868662 vs. ExPASy Swiss-Prot
Match: CATD_BOVIN (Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.503e-15
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 3
Query:  519 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFLYLAIY 662
            L NY+DAQYYGEIGIG+PPQ F+VVFDTGS+NLWVPS  C  L +A +
Sbjct:   51 LKNYMDAQYYGEIGIGTPPQCFTVVFDTGSANLWVPSIHCKLLDIACW 98          

HSP 2 Score: 24.2534 bits (51), Expect = 5.503e-15
Identity = 9/21 (42.86%), Postives = 13/21 (61.90%), Query Frame = 2
Query:  647 ISCYLHSRYRARLSRTYTKIG 709
            I+C+ H +Y +  S TY K G
Sbjct:   95 IACWTHRKYNSDKSSTYVKNG 115          
BLAST of FC868662 vs. ExPASy Swiss-Prot
Match: RENI_RAT (Renin OS=Rattus norvegicus GN=Ren1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.040e-14
Identity = 50/119 (42.02%), Postives = 64/119 (53.78%), Query Frame = 3
Query:  321 LLAAICMWVCPCILASMXXXXXXSHGLLRIQLKKRQLGINTINA--ARLITKNEVHNRFNHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFLYLAIYIRD 671
            LL   C +  P   AS           +R  L++R + +  I+A     I K+   N         V L NYLD QYYGEIGIG+P Q+F V+FDTGS+NLWVPS+KC  LY A  I +
Sbjct:   13 LLWTSCSFSLPTDTASFGRILLKKMPSVREILEERGVDMTRISAEWGEFIKKSSFTN-----VTSPVVLTNYLDTQYYGEIGIGTPSQTFKVIFDTGSANLWVPSTKCGPLYTACEIHN 126          
BLAST of FC868662 vs. ExPASy Swiss-Prot
Match: CARP_NEUCR (Vacuolar protease A OS=Neurospora crassa GN=pep-4 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.037e-14
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 3
Query:  492 NHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC 638
            NHP    V + N+++AQY+ EI IG+PPQ+F VV DTGSSNLWVPSS+C
Sbjct:   72 NHP----VPITNFMNAQYFSEITIGTPPQTFKVVLDTGSSNLWVPSSQC 116          

HSP 2 Score: 30.8018 bits (68), Expect = 2.037e-14
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 2
Query:  644 SISCYLHSRYRARLSRTYTKIGVPCK 721
            SI+CYLH++Y +  S TY K G   K
Sbjct:  118 SIACYLHNKYESSESSTYKKNGTSFK 143          
BLAST of FC868662 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.643e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 3
Query:  399 LLRIQLKKRQLGINTINAARLITKNEVHNRFNHP----KADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFLYLAIYI 665
            L+RI L + Q G   +N  R   +     +   P    K   V L+NY D QY+GEIG+G+PPQ+F+V FDTGSSNLWVPS +C F  +  ++
Sbjct:   26 LIRIPLHRVQPGRRILNLLRGWREPAELPKLGAPSPGDKPIFVPLSNYRDVQYFGEIGLGTPPQNFTVAFDTGSSNLWVPSRRCHFFSVPCWL 118          

HSP 2 Score: 23.0978 bits (48), Expect = 2.643e-14
Identity = 8/23 (34.78%), Postives = 14/23 (60.87%), Query Frame = 2
Query:  641 FSISCYLHSRYRARLSRTYTKIG 709
            FS+ C+LH R+  + S ++   G
Sbjct:  112 FSVPCWLHHRFDPKASSSFQANG 134          
BLAST of FC868662 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.026e-14
Identity = 48/109 (44.04%), Postives = 64/109 (58.72%), Query Frame = 3
Query:  390 SHGLLRIQLKK-----RQLGINTINAARLI--TKNEVHNR----FNHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFLYLAIYIRDTGRG 683
            S  ++RI LKK     R L  + +N  +L+  T +  HN+     N P  +   L NY+DAQYYGEIG+G+P Q F+VVFDTGSSNLW+PS  C F  +A  +     G
Sbjct:   16 SDAIVRIPLKKFRSIRRTLSDSGLNVEQLLAGTNSLQHNQGFPSSNAPTPET--LKNYMDAQYYGEIGLGTPVQMFTVVFDTGSSNLWLPSIHCSFTDIACLLHHKYNG 122          
BLAST of FC868662 vs. ExPASy Swiss-Prot
Match: ASPP_AEDAE (Lysosomal aspartic protease OS=Aedes aegypti GN=AAEL006169 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.742e-14
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 3
Query:  519 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFLYLA 656
            L+NYLDAQYYG I IG+PPQSF VVFDTGSSNLWVPS +C F  +A
Sbjct:   60 LSNYLDAQYYGAITIGTPPQSFKVVFDTGSSNLWVPSKECSFTNIA 105          
BLAST of FC868662 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.270e-13
Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = 3
Query:  399 LLRIQLKKRQLG---INTINA-ARLITKNEVHNRFNHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFLYLAIY 662
            L+R+ L++  LG   +N +N   +L   +       +P    V L+ +++ QY+G IG+G+PPQ+F+VVFDTGSSNLWVPS++C F  LA +
Sbjct:   23 LIRVPLQRIHLGHRILNPLNGWEQLAELSRTSTSGGNPS--FVPLSKFMNTQYFGTIGLGTPPQNFTVVFDTGSSNLWVPSTRCHFFSLACW 112          

HSP 2 Score: 22.7126 bits (47), Expect = 1.270e-13
Identity = 7/23 (30.43%), Postives = 14/23 (60.87%), Query Frame = 2
Query:  641 FSISCYLHSRYRARLSRTYTKIG 709
            FS++C+ H R+  + S ++   G
Sbjct:  107 FSLACWFHHRFNPKASSSFRPNG 129          
BLAST of FC868662 vs. ExPASy Swiss-Prot
Match: CARP_ASPFU (Vacuolar protease A OS=Aspergillus fumigatus GN=pep2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.621e-13
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 3
Query:  414 LKKRQLGINTINAARLITKNEVHNRFNHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC 638
            L ++ +GI       L+ +N +++   H     V ++N+L+AQY+ EI +G+PPQ F VV DTGSSNLWVP S C
Sbjct:   46 LGQKYMGIRPNVHQELLEENSLNDMSRHD----VLVDNFLNAQYFSEISLGTPPQKFKVVLDTGSSNLWVPGSDC 116          

HSP 2 Score: 26.1794 bits (56), Expect = 3.621e-13
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  644 SISCYLHSRYRARLSRTYTKIG 709
            SI+C+LH++Y +  S TY   G
Sbjct:  118 SIACFLHNKYDSSASSTYKANG 139          
The following BLAST results are available for this feature:
BLAST of FC868662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RENI_SHEEP2.737e-1572.55Renin OS=Ovis aries GN=REN PE=2 SV=1[more]
CATD_CHICK3.257e-1576.09Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1[more]
CATD_BOVIN5.503e-1570.83Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2[more]
RENI_RAT1.040e-1442.02Renin OS=Rattus norvegicus GN=Ren1 PE=2 SV=2[more]
CARP_NEUCR2.037e-1463.27Vacuolar protease A OS=Neurospora crassa GN=pep-4 ... [more]
NAPSA_HUMAN2.643e-1444.09Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]
CATD_CLUHA3.026e-1444.04Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
ASPP_AEDAE6.742e-1476.09Lysosomal aspartic protease OS=Aedes aegypti GN=AA... [more]
NAPSA_MOUSE1.270e-1342.39Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]
CARP_ASPFU3.621e-1344.00Vacuolar protease A OS=Aspergillus fumigatus GN=pe... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31003B12EF AbioticL1 Citrus clementina cDNA clone C31003B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868662 ID=FC868662; Name=FC868662; organism=Citrus clementina; type=EST; length=736bp
GATTACGAAACCACGGTAGTGAGACTATTCACTGAAACAAATAAATAAAC
TTACTTGTTCAATAATTAATCTATCTAAACTATAAACGAATAAAATTATT
TTGTCAATGACTCACTGATCTCCAAGTACAACGCGGGAAGAGAAATTGCG
CAGTGGTTTCCTGAGCATTTAATCACACCCACACGAAACAAGCTCACAGA
TGATTCACTACAGGGTGCAAACATAAAAAGGCAGGCCAGGCAGCTCGTTG
GTTCGTTCGTTGATTGGCGCCATATCATCAACTCAGCAGGAAAATTTGTG
TAAGAATGGGGATTAAGTTTCTTCTTGCTGCAATATGTATGTGGGTTTGC
CCCTGCATCTTAGCCTCGATGCCTCCTCCTCCTCCTCCTTCTCATGGGTT
ACTGAGGATTCAACTGAAGAAGCGGCAGTTAGGCATTAACACCATCAACG
CTGCAAGGTTAATCACTAAAAACGAGGTTCACAATCGTTTCAATCATCCT
AAAGCAGATGTAGTTTATTTAAACAACTATCTTGATGCCCAATATTATGG
AGAGATTGGTATTGGTTCACCTCCACAAAGTTTCTCTGTCGTCTTTGATA
CTGGCAGCTCTAATCTTTGGGTCCCATCTTCTAAATGCCTTTTTCTATAT
CTTGCTATTTACATTCGAGATACAGGGCGAGGCTGTCCAGGACTTATACT
AAGATTGGAGTACCTTGCAAATTCATTATGGCTCTG
back to top