FC868662

Overview
NameFC868662
Unique NameFC868662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868662_ssr372 microsatellite FC868662_ssr372:372..389. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9374 contig Ccv1_Contig9374:1..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868662 vs. ExPASy Swiss-Prot
Match: CATE_RANCA (Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.704e-13
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  393 HGLLRIQLKKRQLGINTI-----NAARLITKN-----EVHNRFNHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC 638
            HG++R+ LK RQ  +  I       + L TK      ++ +  + P+     L NYLD +Y+G+I IG+PPQ F+V+FDTGSSNLWVPS  C
Sbjct:   15 HGIIRVPLK-RQKSMRKILKEKGKLSHLWTKQGNEFLQLSDSCSSPETASEPLMNYLDVEYFGQISIGTPPQQFTVIFDTGSSNLWVPSIYC 105          

HSP 2 Score: 22.3274 bits (46), Expect = 4.704e-13
Identity = 10/22 (45.45%), Postives = 12/22 (54.55%), Query Frame = 2
Query:  644 SISCYLHSRYRARLSRTYTKIG 709
            S +C  H+RYR   S TY   G
Sbjct:  107 SQACTKHNRYRPSESTTYVSNG 128          
BLAST of FC868662 vs. ExPASy Swiss-Prot
Match: PEPA4_RABIT (Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.114e-13
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 3
Query:  519 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFLYLAIYIR 668
            L NYLDA+Y+G I IG+PPQ F+V+FDTGSSNLWVPS+ C  L  A++ R
Sbjct:   67 LENYLDAEYFGTISIGTPPQDFTVIFDTGSSNLWVPSTYCSSLACALHKR 116          

HSP 2 Score: 21.557 bits (44), Expect = 6.114e-13
Identity = 8/18 (44.44%), Postives = 11/18 (61.11%), Query Frame = 2
Query:  644 SISCYLHSRYRARLSRTY 697
            S++C LH R+    S TY
Sbjct:  108 SLACALHKRFNPEDSSTY 125          
BLAST of FC868662 vs. ExPASy Swiss-Prot
Match: PEPA2_RABIT (Pepsin II-2/3 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.031e-12
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 3
Query:  519 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFLYLAIYIR 668
            + NYLDA+Y+G I IG+PPQ F+V+FDTGSSNLWVPS+ C  L  A++ R
Sbjct:   67 MENYLDAEYFGTISIGTPPQDFTVIFDTGSSNLWVPSTYCSSLACALHKR 116          

HSP 2 Score: 21.557 bits (44), Expect = 1.031e-12
Identity = 8/18 (44.44%), Postives = 11/18 (61.11%), Query Frame = 2
Query:  644 SISCYLHSRYRARLSRTY 697
            S++C LH R+    S TY
Sbjct:  108 SLACALHKRFNPEDSSTY 125          
BLAST of FC868662 vs. ExPASy Swiss-Prot
Match: CARP_NANOT (Vacuolar protease A OS=Nannizzia otae (strain CBS 113480) GN=PEP2 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.338e-12
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 3
Query:  513 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC 638
            V ++N+L+AQY+ EI IG+PPQ+F VV DTGSSNLWVP   C
Sbjct:   77 VLIDNFLNAQYFSEISIGTPPQTFKVVLDTGSSNLWVPGKDC 118          

HSP 2 Score: 28.1054 bits (61), Expect = 1.338e-12
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  644 SISCYLHSRYRARLSRTYTKIG 709
            SI+C+LHS Y +  S T+T+ G
Sbjct:  120 SIACFLHSTYDSSASSTFTRNG 141          
BLAST of FC868662 vs. ExPASy Swiss-Prot
Match: CATEB_XENLA (Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.833e-12
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  393 HGLLRIQLKKRQL---------GINTINAARLITKNEVHNRFNHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCL 641
            +GL+R+ LK+++           ++ +   + I   +  +  N+ +A    L NY+D QY+GEI IG+PPQ+F+V+FDTGSSNLWVPS  C+
Sbjct:   15 YGLIRVPLKRQKSIRKTPKEKGKLSHVWTQQGIDMVQYTDSCNNDQAPSEPLINYMDVQYFGEISIGTPPQNFTVIFDTGSSNLWVPSVYCI 106          
BLAST of FC868662 vs. ExPASy Swiss-Prot
Match: PEPB_CANFA (Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 3
Query:  390 SHGLLRIQLKKRQLGINTINAARLITKNEVHNRFNHPKAD-----------VVY--LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC 638
            S G+ RI LKK +  I  +   R + +  + N   HPK D           V Y    NYLD+ Y+GEI IG+PPQ+F ++FDTGSSNLWVPS+ C
Sbjct:   14 SEGVERIILKKGK-SIRQVMEERGVLETFLRN---HPKVDPAAKYLFNNDAVAYEPFTNYLDSYYFGEISIGTPPQNFLILFDTGSSNLWVPSTYC 105          
BLAST of FC868662 vs. ExPASy Swiss-Prot
Match: PEPA1_RABIT (Pepsin II-1 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.808e-12
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 3
Query:  519 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFLYLAIYIR 668
            L NYLDA+Y+G I IG+PPQ F+V+FDTGSSNLWVPS+ C  L   ++ R
Sbjct:   67 LENYLDAEYFGTISIGTPPQEFTVIFDTGSSNLWVPSTYCSSLACFLHKR 116          

HSP 2 Score: 21.1718 bits (43), Expect = 3.808e-12
Identity = 7/18 (38.89%), Postives = 12/18 (66.67%), Query Frame = 2
Query:  644 SISCYLHSRYRARLSRTY 697
            S++C+LH R+    S T+
Sbjct:  108 SLACFLHKRFNPDDSSTF 125          
BLAST of FC868662 vs. ExPASy Swiss-Prot
Match: PEPA4_MACFU (Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 42/108 (38.89%), Postives = 56/108 (51.85%), Query Frame = 3
Query:  324 LAAICMWVCPCILASMXXXXXXSHGLLRIQLKKRQLGINTINAARLITKNEVHNRFNHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFL 647
            L+   ++  P +           HGLL+  LKK  L      A++   + E     +        L NYLD +Y+G IGIG+P Q+F+VVFDTGSSNLWVPS  C  L
Sbjct:   12 LSECIIYKVPLVRKKSLRRNLSEHGLLKDFLKKHNLN----PASKYFPQAEAPTLIDEQP-----LENYLDVEYFGTIGIGTPAQNFTVVFDTGSSNLWVPSVYCYSL 110          
BLAST of FC868662 vs. ExPASy Swiss-Prot
Match: CARP_YEAST (Saccharopepsin OS=Saccharomyces cerevisiae GN=PEP4 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.411e-12
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 3
Query:  513 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC 638
            V L NYL+AQYY +I +G+PPQ+F V+ DTGSSNLWVPS++C
Sbjct:   81 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC 122          

HSP 2 Score: 24.2534 bits (51), Expect = 6.411e-12
Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = 2
Query:  644 SISCYLHSRYRARLSRTYTKIG 709
            S++C+LHS+Y    S +Y   G
Sbjct:  124 SLACFLHSKYDHEASSSYKANG 145          
BLAST of FC868662 vs. ExPASy Swiss-Prot
Match: CATE_RABIT (Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 6.415e-12
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 3
Query:  519 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC 638
            L NYLD +Y+G I IGSPPQ+F+V+FDT SSNLWVPS  C
Sbjct:   70 LINYLDMEYFGTISIGSPPQNFTVIFDTVSSNLWVPSVYC 109          

HSP 2 Score: 26.9498 bits (58), Expect = 6.415e-12
Identity = 9/24 (37.50%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  644 SISCYLHSRYRARLSRTYTKIGVP 715
            S +C +H ++R   S TY+++G P
Sbjct:  111 SPACQMHPQFRPSQSNTYSEVGTP 134          
The following BLAST results are available for this feature:
BLAST of FC868662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CATE_RANCA4.704e-1343.48Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1[more]
PEPA4_RABIT6.114e-1364.00Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1[more]
PEPA2_RABIT1.031e-1262.00Pepsin II-2/3 OS=Oryctolagus cuniculus PE=2 SV=1[more]
CARP_NANOT1.338e-1264.29Vacuolar protease A OS=Nannizzia otae (strain CBS ... [more]
CATEB_XENLA2.833e-1240.22Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=... [more]
PEPB_CANFA3.699e-1244.79Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1[more]
PEPA1_RABIT3.808e-1262.00Pepsin II-1 OS=Oryctolagus cuniculus PE=2 SV=1[more]
PEPA4_MACFU6.310e-1238.89Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]
CARP_YEAST6.411e-1266.67Saccharopepsin OS=Saccharomyces cerevisiae GN=PEP4... [more]
CATE_RABIT6.415e-1270.00Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31003B12EF AbioticL1 Citrus clementina cDNA clone C31003B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868662 ID=FC868662; Name=FC868662; organism=Citrus clementina; type=EST; length=736bp
GATTACGAAACCACGGTAGTGAGACTATTCACTGAAACAAATAAATAAAC
TTACTTGTTCAATAATTAATCTATCTAAACTATAAACGAATAAAATTATT
TTGTCAATGACTCACTGATCTCCAAGTACAACGCGGGAAGAGAAATTGCG
CAGTGGTTTCCTGAGCATTTAATCACACCCACACGAAACAAGCTCACAGA
TGATTCACTACAGGGTGCAAACATAAAAAGGCAGGCCAGGCAGCTCGTTG
GTTCGTTCGTTGATTGGCGCCATATCATCAACTCAGCAGGAAAATTTGTG
TAAGAATGGGGATTAAGTTTCTTCTTGCTGCAATATGTATGTGGGTTTGC
CCCTGCATCTTAGCCTCGATGCCTCCTCCTCCTCCTCCTTCTCATGGGTT
ACTGAGGATTCAACTGAAGAAGCGGCAGTTAGGCATTAACACCATCAACG
CTGCAAGGTTAATCACTAAAAACGAGGTTCACAATCGTTTCAATCATCCT
AAAGCAGATGTAGTTTATTTAAACAACTATCTTGATGCCCAATATTATGG
AGAGATTGGTATTGGTTCACCTCCACAAAGTTTCTCTGTCGTCTTTGATA
CTGGCAGCTCTAATCTTTGGGTCCCATCTTCTAAATGCCTTTTTCTATAT
CTTGCTATTTACATTCGAGATACAGGGCGAGGCTGTCCAGGACTTATACT
AAGATTGGAGTACCTTGCAAATTCATTATGGCTCTG
back to top