FC868665
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3) HSP 1 Score: 80.1073 bits (196), Expect = 1.075e-14 Identity = 49/178 (27.53%), Postives = 88/178 (49.44%), Query Frame = 1 Query: 112 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVV 642 + H KRL+ P W +++ F K +GPH +PL+++LR+ L YA +E L + +VL++ K +D+ P G D+++ + E +R+ GR L +I + A+ KL K+ + G + +DG T I D A D+I + E ++ +++ G +V Sbjct: 1 MSNHQKRLSVPNSWPVERKTATFTVKAGAGPH-GESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALV 177
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.394e-14 Identity = 52/170 (30.59%), Postives = 82/170 (48.24%), Query Frame = 1 Query: 127 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGN 636 KRL P+ + + + P P G HK+ + L+ I+R+ L+ + RE IL V VD KV ++ + GFMDV+ I + E++R++Y+ +G L S + A K +V++ + +DGR + D I D + L KITE IK GN Sbjct: 6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVIEI--SGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGN 173
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.241e-12 Identity = 52/186 (27.96%), Postives = 90/186 (48.39%), Query Frame = 1 Query: 85 LTNTKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVV 642 +T TK+ +K LK + W ++ L G+ HK +PL++ LR+ LK RE+ IL V+VD KV ++ GFMD +++ + ++ + YD KG+ + E KL +V+ + + G I+ +DG T+ IK D++ + + +I + +KF GN V Sbjct: 2 ITKTKIMMAPRK-LKIARKSRFWAVNSLPGS---------HKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRV 175 The following BLAST results are available for this feature:
BLAST of FC868665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868665 ID=FC868665; Name=FC868665; organism=Citrus clementina; type=EST; length=644bpback to top |