FC868665

Overview
NameFC868665
Unique NameFC868665
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15251 contig Ccv1_Contig15251:12..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.308e-28
Identity = 71/175 (40.57%), Postives = 98/175 (56.00%), Query Frame = 1
Query:  109 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVG 633
            G +KHLKR  APK W + K    +  K S+GPH   E +PL+++LR+ L  A   RE   IL    VLVD   R +  +P GFMDV+SIPK N+ FR+L D KGR  L  I ++++ FKL K+      + G   +N   GR I   D   K  D + L++   KI++ IKF+ G
Sbjct:    5 GSRKHLKRFKAPKMWPIHKKEEVWTTKTSAGPHALEESIPLVMVLRDILGLAANSREAKIILNNSDVLVDGIPRKNHRFPVGFMDVISIPKINKTFRVLQDYKGRLVLKEIEEKDSTFKLVKILGKTTIKGGKTQLNLEGGRNI-IADDDYKTGDVLLLNIPEQKISDSIKFEEG 178          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_METTH (30S ribosomal protein S4e OS=Methanobacterium thermoautotrophicum GN=rps4e PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.708e-28
Identity = 69/171 (40.35%), Postives = 97/171 (56.73%), Query Frame = 1
Query:  115 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFD 627
            +KHLKR  +P HW +      +  KPS GPH     LPL++I+R+ LK A   RE   I+    VLVD + R +  +P GFMDVVSIP+T + +R+L D +GR  LH I +E A FKLCK+ +    + G   +N +DGR     D   +  D +KL +   +I E I F+
Sbjct:    7 RKHLKRFKSPVHWPIHPKEYKWTVKPSPGPHAIENSLPLMIIVRDILKVADNAREARKIINSGEVLVDGRPRKNYKFPVGFMDVVSIPRTGDVYRVLPDERGRLVLHPIDEENAGFKLCKIVNKTTIKGGRTQLNLHDGRNY-LSDDEFRVGDVVKLSIPEQEILERIPFE 176          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_META3 (30S ribosomal protein S4e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4e PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.107e-27
Identity = 66/186 (35.48%), Postives = 100/186 (53.76%), Query Frame = 1
Query:  106 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNV 639
            +G +KHLKRL APK+W + +    +  +PS+GPH     LPL+L+LR+ L YA   RE   ++    VLVD   R D  YP G MDV+S+P  NE+F ++ D KGR +L+ I+D     KLCK+ +    + G   +N +DGR          +  + + K  D + L +    I   ++F  G +
Sbjct:    4 KGPRKHLKRLPAPKNWQISRKTNKYTTRPSAGPHAMGSSLPLLLVLRDLLGYADNAREAKKVIKMGKVLVDGVKRKDHRYPTGLMDVISLPDANESFLVVLDEKGRIKLNKIKDNTK--KLCKIENKTVIKGGHIQLNLHDGRNQIVKLADATKAEEDIYKTGDCVILSIPEQSIVGHVQFGEGKL 187          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.176e-27
Identity = 68/183 (37.16%), Postives = 106/183 (57.92%), Query Frame = 1
Query:  106 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVV 642
            +G K+HLKRL AP  W + +    +A +PS GPH  +  +PLI I+R+ L YA T RE   IL +  +LVD +VR D  +P G MDVVSIP+T E++R+L +  G+  LH I +EEAK K  ++ + +  +     +N +DG     ++   D   K + T+ + +   +I + + F+VG  V
Sbjct:    4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKILNEGKILVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEAKLKPFRINNKRMVKGAKVQLNLHDGSNHLVSLAEKD-AYKTSYTVIMQVPERQIVKVLPFEVGAYV 185          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.088e-26
Identity = 68/184 (36.96%), Postives = 105/184 (57.07%), Query Frame = 1
Query:  106 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVV 642
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ I+R+ L YA T RE   IL +   LVD KVR D  +P G MDVVSIP+T E++R+L +  G+  LH I +EEA  K  ++R+ +  +     +N +DG    +  PL + ++     T+ + +   +I E + F+ G  V
Sbjct:    4 KGPKRHLKRLAAPSSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGKVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLVLHPISEEEANIKPLRIRNKRMVKGAKVQLNFHDG--TNHLIPLTEKDNYFTSYTVLMKVPEREIMEVLPFEKGAYV 185          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.075e-26
Identity = 69/191 (36.13%), Postives = 104/191 (54.45%), Query Frame = 1
Query:  100 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLETNKITEFIKFDVGNVV 642
            MAR G ++HLK L APK W + +  G F  KPS GPH     +PL++++R+ L YA T RE   ++ + H  +D +VR +  YP GFMDV+ I  T E +R+L      F LH I  EEA+FKL ++      + G   ++ +DGR   IR  DP         K   T+K+ +   ++  +   +VG++V
Sbjct:    1 MARMGGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRNYKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLV 191          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.036e-25
Identity = 67/184 (36.41%), Postives = 105/184 (57.07%), Query Frame = 1
Query:  106 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVV 642
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ I+R+ L YA T RE   IL +   LVD +VR D  +P G MDVVSIP+T E++R+L +  G+  LH I +EEA  K  ++R+ +  +     +N +DG    +  PL + ++     T+ + +   +I E + F+ G  V
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYV 185          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_METM5 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4e PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.308e-25
Identity = 63/166 (37.95%), Postives = 98/166 (59.04%), Query Frame = 1
Query:  106 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNK 603
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++A  KLCK+ +    + G   +N +DGR     + ++K +D  K + +  K
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKADAKLCKIVNKTVIKGGHIQLNLHDGR-----NQIVKVSDATKAEEDVYK 162          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.015e-25
Identity = 63/186 (33.87%), Postives = 101/186 (54.30%), Query Frame = 1
Query:  106 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNV 639
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LI+R+ LK A   RE   I+    +L+D   R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR         ++  + + K  D++ + L    +   ++F+ G +
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKL 187          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.015e-25
Identity = 63/186 (33.87%), Postives = 101/186 (54.30%), Query Frame = 1
Query:  106 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNV 639
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LI+R+ LK A   RE   I+    +L+D   R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR         ++  + + K  D++ + L    +   ++F+ G +
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKL 187          
The following BLAST results are available for this feature:
BLAST of FC868665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_METST1.308e-2840.5730S ribosomal protein S4e OS=Methanosphaera stadtm... [more]
RS4E_METTH1.708e-2840.3530S ribosomal protein S4e OS=Methanobacterium ther... [more]
RS4E_META31.107e-2735.4830S ribosomal protein S4e OS=Methanococcus aeolicu... [more]
RS4E_PYRKO7.176e-2737.1630S ribosomal protein S4e OS=Pyrococcus kodakaraen... [more]
RS4E_PYRHO2.088e-2636.9630S ribosomal protein S4e OS=Pyrococcus horikoshii... [more]
RS4E_HYPBU6.075e-2636.1330S ribosomal protein S4e OS=Hyperthermus butylicu... [more]
RS4E_PYRAB1.036e-2536.4130S ribosomal protein S4e OS=Pyrococcus abyssi GN=... [more]
RS4E_METM52.308e-2537.9530S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METVS3.015e-2533.8730S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METVA3.015e-2533.8730S ribosomal protein S4e OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank descriptionC31003C04EF AbioticL1 Citrus clementina cDNA clone C31003C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868665 ID=FC868665; Name=FC868665; organism=Citrus clementina; type=EST; length=644bp
AGCTAGCAGCGCCTTCGAGTGCATTTAACACTTCGTTTTTGTTTTGCAGG
ACTGTGACACGCCGTTGGCGAATCCACGCTCAGGCTCACGAACACAAAAA
TGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCAC
TGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCCAAGCCTTCATCTGG
GCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCTTATCTTACGCAACC
GCTTGAAGTATGCTCTTACATACCGAGAAGTCATTGCAATTTTGATGCAA
CGACATGTGTTGGTTGATGCTAAGGTTCGCACAGATAAGACTTACCCTGC
TGGGTTCATGGATGTTGTGTCAATTCCAAAGACGAATGAGAACTTCCGTC
TCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCAATCAGGGATGAG
GAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAATTTGGGCAGAA
GGGAATCCCTTACATCAACACTTATGATGGGAGGACTATTCGCTACCCAG
ACCCACTCATCAAGGCCAATGATACCATCAAGCTGGACCTGGAGACTAAC
AAGATCACCGAGTTCATCAAGTTTGATGTTGGAAATGTTGTGAT
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