FC868670

Overview
NameFC868670
Unique NameFC868670
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: RPE_YEAST (Ribulose-phosphate 3-epimerase OS=Saccharomyces cerevisiae GN=RPE1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.517e-28
Identity = 68/169 (40.24%), Postives = 97/169 (57.40%), Query Frame = 3
Query:  222 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP-------------LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 686
            I++PSIL+++FA LG +   V  AG DW+H+DVMDG FVPNIT+G  +V +LR     P              D H+M+  PE+ V DF K GAD  + H E +   +HL   +  IK  G KA   + P TS+  +  +   +D+ L+M+V PGFGGQ F+E  + K+
Sbjct:    5 IIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPGDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHL---VKLIKSKGIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKV 170          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: RPE1_ORYSJ (Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica GN=Os09g0505700 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.344e-26
Identity = 62/157 (39.49%), Postives = 92/157 (58.60%), Query Frame = 3
Query:  225 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV---VDLVLIMSVNPGFGGQSFIESQVKKI 686
            ++PS+LS++FA L  +   +   G DW+H+D+MDG FVPN+TIG  V+ +LR  T   LD HLM+  P   V    KAGA   + H E S   +    +  IK  G + GV L P T +  +  +++    V+LVL+M+V PGFGGQ F+   ++K+
Sbjct:    9 IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRD-NWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKV 164          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: RPE_CANGA (Ribulose-phosphate 3-epimerase OS=Candida glabrata GN=RPE1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.592e-25
Identity = 64/171 (37.43%), Postives = 95/171 (55.56%), Query Frame = 3
Query:  222 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP----------------LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 686
            I++PSIL+++FA LG +   V  +G +W+H+DVMDG FVPNIT+G  +V +LR                       D H+M+ EPE+ V DF KAGAD  + H E  +T      +  IK+ G KA   + P T +  +  +   +D+ L+M+V PGFGGQ F+   + K+
Sbjct:    5 IIAPSILASDFANLGCECHRVINSGAEWLHIDVMDGHFVPNITLGQPIVTSLRRAVPRSQEEEKASGEVARPTAFFDCHMMVEEPEKWVADFAKAGADQFTFHYE--ATKDPLSLVKLIKENGIKAACAIKPGTPVDVLFELAPYLDMALVMTVEPGFGGQKFMPDMMPKV 173          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: ALSE_ECOLI (D-allulose-6-phosphate 3-epimerase OS=Escherichia coli (strain K12) GN=alsE PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 52/154 (33.77%), Postives = 93/154 (60.39%), Query Frame = 3
Query:  225 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 686
            +SPS++  +  K  EQ++ ++ +  D+ H+D+MDG FVPN+T+ P  V  ++ +   PLD HLM+  P+  +    +AGAD +++H E  +     R +++I+    K G++LNP T + A++  +   D + +M+V+PGF GQ FI   + K+
Sbjct:    3 ISPSLMCMDLLKFKEQIEFID-SHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPETING-QAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAGQPFIPEMLDKL 154          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: RPE_SCHPO (Ribulose-phosphate 3-epimerase OS=Schizosaccharomyces pombe GN=SPAC31G5.05c PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.774e-25
Identity = 60/157 (38.22%), Postives = 94/157 (59.87%), Query Frame = 3
Query:  225 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALR---PVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 686
            ++PS+L+ +FA L ++V  +   G DW+HVDVMD +FVPN+TIGP+VV A+R      +   D HLM++EPE+ +     AGA +   H E  +T      +++  + G   G  L P T +  I   ++ +D+VL+M+V PG GGQSF+   + K+
Sbjct:    6 IAPSLLAGDFANLEKEVGRMLKYGSDWLHVDVMDAQFVPNLTIGPIVVKAMRNHYTKEEAFFDCHLMVIEPERYIDQLADAGASLFCFHYE--ATEKHEEIISRAHEKGMLVGCALKPKTPVEVILPFVEKLDMVLVMTVEPGKGGQSFMPECLPKV 160          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: RPE_ASHGO (Ribulose-phosphate 3-epimerase OS=Ashbya gossypii GN=RPE1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.286e-24
Identity = 63/166 (37.95%), Postives = 96/166 (57.83%), Query Frame = 3
Query:  222 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--------TDLP---LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 686
            I++PSIL+++FA L      V  AG +W+H+DVMDG FVPNIT+GP +V +LR          +D P    D H+M+ EPE+ V  F++ GAD  + H E  +T +    +  IK  G +A   + P T +  +  +   +D+ L+M+V PGFGGQ F+   + K+
Sbjct:    5 IIAPSILASDFANLECGCHRVINAGAEWLHIDVMDGHFVPNITLGPPIVKSLRKAVPRVGDKESDKPKAFFDCHMMVAEPEKWVDVFVENGADQFTFHYE--ATKNPLELVKLIKSRGIRAACAIKPDTPVDVLFELAPYLDMALVMTVEPGFGGQKFMPDMMPKV 168          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: RPE_PONAB (Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=RPE PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.194e-24
Identity = 60/156 (38.46%), Postives = 95/156 (60.90%), Query Frame = 3
Query:  225 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 686
            + PSIL+++ A LG +   +  +G D++H+DVMDG FVPNIT G  VV++LR     D   D+H+M+ +PEQ V     AGA+  + H E  +T +    +  I++ G K G+ + P TS+  +    + +D+ L+M+V PGFGGQ F+E  + K+
Sbjct:    7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYAFHLE--ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKV 160          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: RPE_HUMAN (Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.194e-24
Identity = 60/156 (38.46%), Postives = 95/156 (60.90%), Query Frame = 3
Query:  225 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 686
            + PSIL+++ A LG +   +  +G D++H+DVMDG FVPNIT G  VV++LR     D   D+H+M+ +PEQ V     AGA+  + H E  +T +    +  I++ G K G+ + P TS+  +    + +D+ L+M+V PGFGGQ F+E  + K+
Sbjct:    7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLE--ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKV 160          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: RPE_MOUSE (Ribulose-phosphate 3-epimerase OS=Mus musculus GN=Rpe PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.384e-24
Identity = 59/156 (37.82%), Postives = 94/156 (60.26%), Query Frame = 3
Query:  225 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 686
            + PSIL+++ A LG +   +  +G D++H+DVMDG FVPNIT G  VV++LR     D   D+H+M+  PEQ V     AGA+  + H E  +T +    +  I++ G K G+ + P T++  +    + +D+ L+M+V PGFGGQ F+E  + K+
Sbjct:    7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSRPEQWVKPMAVAGANQYTFHLE--ATENPGALIKDIRENGMKVGLAIKPGTTVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKV 160          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: RPE_ENCCU (Ribulose-phosphate 3-epimerase OS=Encephalitozoon cuniculi GN=RPE1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.872e-16
Identity = 54/154 (35.06%), Postives = 78/154 (50.65%), Query Frame = 3
Query:  234 SILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH---CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 686
            SIL  NF  L E++  ++  G   IH+DVMD  FV NIT GP +++ +    D   DVH+M+  P   +         +V++H   C+++      R  N +       G+ LNP T +   E  +   D VLIMSV PGFGGQ F E  + K+
Sbjct:   13 SILDCNFGNLEEELGELKRNGVTNIHLDVMDTTFVKNITFGPCIINRILE-HDFVFDVHMMVESPLDIIMQIDLERVSLVTIHSEVCDKAGVAEYLRKRNVL------FGIALNPETQVDDAE--MRSADFVLIMSVKPGFGGQKFQEECLAKV 157          
The following BLAST results are available for this feature:
BLAST of FC868670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RPE_YEAST9.517e-2840.24Ribulose-phosphate 3-epimerase OS=Saccharomyces ce... [more]
RPE1_ORYSJ2.344e-2639.49Ribulose-phosphate 3-epimerase, cytoplasmic isofor... [more]
RPE_CANGA2.592e-2537.43Ribulose-phosphate 3-epimerase OS=Candida glabrata... [more]
ALSE_ECOLI3.385e-2533.77D-allulose-6-phosphate 3-epimerase OS=Escherichia ... [more]
RPE_SCHPO5.774e-2538.22Ribulose-phosphate 3-epimerase OS=Schizosaccharomy... [more]
RPE_ASHGO1.286e-2437.95Ribulose-phosphate 3-epimerase OS=Ashbya gossypii ... [more]
RPE_PONAB2.194e-2438.46Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=... [more]
RPE_HUMAN2.194e-2438.46Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=... [more]
RPE_MOUSE6.384e-2437.82Ribulose-phosphate 3-epimerase OS=Mus musculus GN=... [more]
RPE_ENCCU2.872e-1635.06Ribulose-phosphate 3-epimerase OS=Encephalitozoon ... [more]

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Properties
Property NameValue
Genbank descriptionC31003C09EF AbioticL1 Citrus clementina cDNA clone C31003C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868670 ID=FC868670; Name=FC868670; organism=Citrus clementina; type=EST; length=687bp
GGGGAAGAGAGAGAGTTTGAAGATCGTGAAACAAAAAAAGCGTCAAGATG
TCTACAGGCTCGCTGTGTTCATCAACGACTCAGATCAATGGCTTTACAGG
TGGTTTCATGTTGCAGAAAACCAATCTTAATCAGCCCAGTTCACTTAGTT
TTACAAGGGGGAGAATTCATACTATAGTGAAGGCATCAGCTCGTGTGGAT
AAGTTCTCGAAAAGTGATATTATTGTTTCTCCATCTATTCTCTCTGCTAA
TTTCGCGAAGTTAGGCGAGCAGGTAAAAGCAGTGGAATTGGCTGGTTGTG
ATTGGATTCATGTTGATGTCATGGATGGTCGTTTTGTTCCAAACATTACA
ATTGGACCTCTTGTGGTTGATGCCTTGCGCCCTGTGACAGACCTTCCTTT
GGATGTTCATTTGATGATTGTCGAACCTGAACAACGAGTGCCTGATTTTA
TCAAGGCTGGAGCAGACATAGTCAGCGTCCACTGTGAGCAATCATCCACC
ATTCATTTGCACCGCACTCTTAACCAAATAAAAGATTTGGGAGCTAAAGC
TGGAGTTGTCCTTAACCCTGCTACCTCACTGAGTGCAATAGAATGTGTCC
TTGATGTGGTTGATCTTGTCTTGATCATGTCGGTGAACCCTGGCTTTGGT
GGGCAAAGCTTTATTGAGAGCCAAGTAAAAAAAATCT
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