FC868670

Overview
NameFC868670
Unique NameFC868670
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868670_ssr6 microsatellite FC868670_ssr6:6..15. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9463 contig Ccv1_Contig9463:76..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: SGCE_ECOLI (Protein sgcE OS=Escherichia coli (strain K12) GN=sgcE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.751e-16
Identity = 51/156 (32.69%), Postives = 81/156 (51.92%), Query Frame = 3
Query:  219 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 686
            +I+ PS+ SAN    G ++ A++      +H+D+ D  F+ NIT G   V A+   T  PL  H M+  P++      +     + VH E  +  +   TL +I+  GA+AG+V NPAT + A   +   +D V++M+  P   GQ FI S  +KI
Sbjct:    1 MILHPSLASANPLHYGRELTALDNLDFGSLHLDIEDSSFINNITFGMKTVQAVARQTPHPLSFHFMLARPQRWFNALAEIRPAWIFVHAE--TLDYPSETLTEIRHTGARAGLVFNPATPIDAWRYLASELDGVMVMTSEPDGQGQRFIPSMCEKI 154          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: LSRE_SALPA (Putative epimerase lsrE OS=Salmonella paratyphi A GN=lsrE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 49/153 (32.03%), Postives = 82/153 (53.59%), Query Frame = 3
Query:  225 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQI---------KDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQ 656
            +S  IL+  +  L   ++ +E      +H+D+MDG+F P  T+GP  V+ L P T +  DVHLM+ +        +KAGA  +++  E    IHLH TL+ +          ++    G+ L PAT L  I  +L  V+++ +++VNPG+G +
Sbjct:   22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVEQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSK 170          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: LSRE_SALTY (Putative epimerase lsrE OS=Salmonella typhimurium GN=lsrE PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 49/153 (32.03%), Postives = 81/153 (52.94%), Query Frame = 3
Query:  225 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQI---------KDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQ 656
            +S  IL+  +  L   ++ +E      +H+D+MDG+F P  T+GP  V  L P T +  DVHLM+ +        +KAGA  +++  E    IHLH TL+ +          ++    G+ L PAT L  I  +L  V+++ +++VNPG+G +
Sbjct:   22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSK 170          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: LSRE_SALTI (Putative epimerase lsrE OS=Salmonella typhi GN=lsrE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 49/153 (32.03%), Postives = 81/153 (52.94%), Query Frame = 3
Query:  225 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQI---------KDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQ 656
            +S  IL+  +  L   ++ +E      +H+D+MDG+F P  T+GP  V  L P T +  DVHLM+ +        +KAGA  +++  E    IHLH TL+ +          ++    G+ L PAT L  I  +L  V+++ +++VNPG+G +
Sbjct:   22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWAAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIDGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSK 170          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: LSRE_SALPB (Putative epimerase lsrE OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=lsrE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 49/153 (32.03%), Postives = 81/153 (52.94%), Query Frame = 3
Query:  225 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQI---------KDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQ 656
            +S  IL+  +  L   ++ +E      +H+D+MDG+F P  T+GP  V  L P T +  DVHLM+ +        +KAGA  +++  E    IHLH TL+ +          ++    G+ L PAT L  I  +L  V+++ +++VNPG+G +
Sbjct:   22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSK 170          
BLAST of FC868670 vs. ExPASy Swiss-Prot
Match: LSRE_SALCH (Putative epimerase lsrE OS=Salmonella choleraesuis GN=lsrE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 49/153 (32.03%), Postives = 81/153 (52.94%), Query Frame = 3
Query:  225 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQI---------KDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQ 656
            +S  IL+  +  L   ++ +E      +H+D+MDG+F P  T+GP  V  L P T +  DVHLM+ +        +KAGA  +++  E    IHLH TL+ +          ++    G+ L PAT L  I  +L  V+++ +++VNPG+G +
Sbjct:   22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSK 170          
The following BLAST results are available for this feature:
BLAST of FC868670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SGCE_ECOLI3.751e-1632.69Protein sgcE OS=Escherichia coli (strain K12) GN=s... [more]
LSRE_SALPA2.688e-1432.03Putative epimerase lsrE OS=Salmonella paratyphi A ... [more]
LSRE_SALTY5.989e-1432.03Putative epimerase lsrE OS=Salmonella typhimurium ... [more]
LSRE_SALTI5.989e-1432.03Putative epimerase lsrE OS=Salmonella typhi GN=lsr... [more]
LSRE_SALPB5.989e-1432.03Putative epimerase lsrE OS=Salmonella paratyphi B ... [more]
LSRE_SALCH5.989e-1432.03Putative epimerase lsrE OS=Salmonella choleraesuis... [more]

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Properties
Property NameValue
Genbank descriptionC31003C09EF AbioticL1 Citrus clementina cDNA clone C31003C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868670 ID=FC868670; Name=FC868670; organism=Citrus clementina; type=EST; length=687bp
GGGGAAGAGAGAGAGTTTGAAGATCGTGAAACAAAAAAAGCGTCAAGATG
TCTACAGGCTCGCTGTGTTCATCAACGACTCAGATCAATGGCTTTACAGG
TGGTTTCATGTTGCAGAAAACCAATCTTAATCAGCCCAGTTCACTTAGTT
TTACAAGGGGGAGAATTCATACTATAGTGAAGGCATCAGCTCGTGTGGAT
AAGTTCTCGAAAAGTGATATTATTGTTTCTCCATCTATTCTCTCTGCTAA
TTTCGCGAAGTTAGGCGAGCAGGTAAAAGCAGTGGAATTGGCTGGTTGTG
ATTGGATTCATGTTGATGTCATGGATGGTCGTTTTGTTCCAAACATTACA
ATTGGACCTCTTGTGGTTGATGCCTTGCGCCCTGTGACAGACCTTCCTTT
GGATGTTCATTTGATGATTGTCGAACCTGAACAACGAGTGCCTGATTTTA
TCAAGGCTGGAGCAGACATAGTCAGCGTCCACTGTGAGCAATCATCCACC
ATTCATTTGCACCGCACTCTTAACCAAATAAAAGATTTGGGAGCTAAAGC
TGGAGTTGTCCTTAACCCTGCTACCTCACTGAGTGCAATAGAATGTGTCC
TTGATGTGGTTGATCTTGTCTTGATCATGTCGGTGAACCCTGGCTTTGGT
GGGCAAAGCTTTATTGAGAGCCAAGTAAAAAAAATCT
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