FC868672

Overview
NameFC868672
Unique NameFC868672
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL2_CAEEL (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis elegans GN=evl-20 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.812e-20
Identity = 44/97 (45.36%), Postives = 66/97 (68.04%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 707
            +R  W++YF++T  LI+VVDS+DR+R+++  +EL ++L E+ L  A LLV ANK DLP A++   I   L LHS++  HW I S CA SG+ L + +
Sbjct:   73 LRSYWKNYFESTDALIWVVDSSDRERLLQCSEELKKLLGEERLAGASLLVLANKSDLPGAIDVNSIAQVLDLHSIKSHHWKIFSCCALSGDRLVQAM 169          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARFF_DICDI (ADP-ribosylation factor F OS=Dictyostelium discoideum GN=arrF PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.812e-20
Identity = 41/67 (61.19%), Postives = 55/67 (82.09%), Query Frame = 2
Query:    8 LFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDRV 208
            +FS    K+ +RILM+GLD AGK+T+LYKLK G+++ TIPTIGFNVE +EYKN+S  VWD+GGQ+ +
Sbjct:   16 IFSLFEGKRNIRILMIGLDGAGKSTLLYKLKFGDVIRTIPTIGFNVEIIEYKNLSMNVWDIGGQNNI 82          

HSP 2 Score: 94.3597 bits (233), Expect = 6.614e-19
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRML--NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            IR LWR Y Q T   IFVVDS DR+R  E + E+  ++  N++E  +A LL+FANKQD+ N +  AE+ + L L+SL  + W++Q   A  G+G+YEG D
Sbjct:   82 IRALWRQYDQRTDVFIFVVDSTDRERFDEVKQEIKNIIEQNKNESSNASLLIFANKQDMLNPITPAELVNSLDLNSLTNKKWHVQPCSAVRGDGIYEGFD 181          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL3_CAEEL (ADP-ribosylation factor-like protein 3 OS=Caenorhabditis elegans GN=arl-3 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 47/97 (48.45%), Postives = 65/97 (67.01%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 707
            IRP W +Y++N   LIFV+DSND+ R  E   EL  +L+E++LR   +L+FANKQDL  A ++ EIT KL L  LR R W+IQ+  A   EG+ +G+
Sbjct:   75 IRPYWSNYYENIDTLIFVIDSNDKKRFDEMNIELGELLDEEKLRKVPVLIFANKQDLVTAASSEEITRKLNLDLLRDRTWHIQACSALKNEGINDGI 171          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL17_HUMAN (ADP-ribosylation factor-like protein 17 OS=Homo sapiens GN=ARL17 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 2
Query:    5 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDRV 208
            KLF  L  KK+MRIL++ LD AGKTTILYKLKLGE V  +PT+GF VETVEYKN +F VWDVG   ++
Sbjct:    7 KLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKNNTFAVWDVGSHFKI 74          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL2_CAEBR (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis briggsae GN=evl-20.1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 707
            +R  W++YF++T  LI+VVDS+DR+R+ +  +EL ++L E+ L  A LLV ANK DLP A++   I   L L S++  HW I S CA SGE L + +
Sbjct:   73 LRSYWKNYFESTDALIWVVDSSDRERLTQCSEELKKLLQEERLSGASLLVLANKSDLPGAIDVNSIAQVLELQSIKTHHWKIFSCCALSGERLVQAM 169          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL5C_MOUSE (ADP-ribosylation factor-like protein 5C OS=Mus musculus GN=Arl5c PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 42/97 (43.30%), Postives = 67/97 (69.07%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 707
            +R  W  Y+ N + +I V+DS DR+R++  R+EL++ML  + L++A +L+FANKQD+ ++M  AEI+  L L +++   W+IQ  CA +GEGL  GL
Sbjct:   73 LRSTWDTYYSNAEFVILVIDSTDRNRLLTTREELYKMLAHEALQNASVLIFANKQDVKDSMTTAEISQFLTLSAIKDHPWHIQGCCALTGEGLPAGL 169          

HSP 2 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 2
Query:   17 KLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDRVSNI*NTKIS 235
            ++F  +E ++++VGLD AGKTTILY+    E+V T  TIG NVE +  +   F +WD+GGQ+ + +  +T  S
Sbjct:   10 RIFGSQEHKVIIVGLDNAGKTTILYQFLTNEVVHTCSTIGSNVEEIVLRKTHFLMWDLGGQEALRSTWDTYYS 82          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL4C_MOUSE (ADP-ribosylation factor-like protein 4C OS=Mus musculus GN=Arl4c PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLD 710
            +RPLW+ Y + T G+I+VVDS D DR+ EA+ ELH++    E +   LLV ANKQDLP ++  AEI  +L LH L     +++Q  CA  GEGL EG+D
Sbjct:   75 LRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMD 173          

HSP 2 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   14 SKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-----ISFTVWDVGGQDRV 208
            S + A + + I+M+GLD+AGKTT+LY+LK  E V T+PTIGFN E ++  N     IS   WDVGGQ+++
Sbjct:    6 SNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAKGISCHFWDVGGQEKL 75          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL4C_HUMAN (ADP-ribosylation factor-like protein 4C OS=Homo sapiens GN=ARL4C PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLD 710
            +RPLW+ Y + T G+I+VVDS D DR+ EA+ ELH++    E +   LLV ANKQDLP ++  AEI  +L LH L     +++Q  CA  GEGL EG+D
Sbjct:   75 LRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMD 173          

HSP 2 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   14 SKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-----ISFTVWDVGGQDRV 208
            S + A + + I+M+GLD+AGKTT+LY+LK  E V T+PTIGFN E ++  N     IS   WDVGGQ+++
Sbjct:    6 SNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAKGISCHFWDVGGQEKL 75          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL5_CAEEL (ADP-ribosylation factor-like protein 5 OS=Caenorhabditis elegans GN=arl-5 PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATSGEGLYEGLD 710
            +R  W  Y+  T  +I V+DS+D  R+   +++LH ML  ++L  A +LV ANKQDLP AMN AE++ +LGL +LR  R W I   CA  GEGL E L+
Sbjct:   74 LRKSWSTYYVQTDVVIVVIDSSDTTRIPIMKEQLHNMLQHEDLARAHILVLANKQDLPGAMNPAEVSTQLGLQTLRGARKWQINGCCAVKGEGLPEALE 172          

HSP 2 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 2
Query:    5 KLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 202
            KLF   +  K+ +I++VGLD AGKTTILY     + V T PTIG NVE V Y+N+ F +WD+GGQ+
Sbjct:    7 KLFQSWWIGKKYKIIVVGLDNAGKTTILYNYVTKDQVETKPTIGSNVEEVSYRNLDFVIWDIGGQE 72          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL5C_HUMAN (Putative ADP-ribosylation factor-like protein 5C OS=Homo sapiens GN=ARL5C PE=2 SV=4)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 40/90 (44.44%), Postives = 63/90 (70.00%), Query Frame = 3
Query:  426 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 695
            +W  Y+ NT+ +I V+DS DRDR++  R+EL++ML  + L+DA +L+FANKQD+ ++M   EI+  L L +++   W+IQ  CA + EGL
Sbjct:   76 IWNTYYSNTEFIILVIDSTDRDRLLTTREELYKMLAHEALQDASVLIFANKQDVKDSMRMVEISHFLTLSTIKDHSWHIQGCCALTREGL 165          
The following BLAST results are available for this feature:
BLAST of FC868672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
ARL2_CAEEL7.812e-2045.36ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARFF_DICDI7.812e-2061.19ADP-ribosylation factor F OS=Dictyostelium discoid... [more]
ARL3_CAEEL1.020e-1948.45ADP-ribosylation factor-like protein 3 OS=Caenorha... [more]
ARL17_HUMAN2.969e-1966.18ADP-ribosylation factor-like protein 17 OS=Homo sa... [more]
ARL2_CAEBR6.614e-1945.36ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARL5C_MOUSE1.473e-1843.30ADP-ribosylation factor-like protein 5C OS=Mus mus... [more]
ARL4C_MOUSE2.513e-1848.48ADP-ribosylation factor-like protein 4C OS=Mus mus... [more]
ARL4C_HUMAN2.513e-1848.48ADP-ribosylation factor-like protein 4C OS=Homo sa... [more]
ARL5_CAEEL3.282e-1846.46ADP-ribosylation factor-like protein 5 OS=Caenorha... [more]
ARL5C_HUMAN4.287e-1844.44Putative ADP-ribosylation factor-like protein 5C O... [more]

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Properties
Property NameValue
Genbank descriptionC31003C12EF AbioticL1 Citrus clementina cDNA clone C31003C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868672 ID=FC868672; Name=FC868672; organism=Citrus clementina; type=EST; length=711bp
CACCAAGCTTTTCAGTAAGTTATTTGCAAAGAAGGAGATGCGAATTCTTA
TGGTTGGTCTTGATGCAGCTGGTAAAACCACAATTTTATATAAGCTTAAG
TTAGGGGAGATCGTTACCACCATCCCCACCATTGGTTTCAATGTGGAGAC
TGTGGAATACAAGAATATTAGCTTCACTGTCTGGGATGTTGGAGGTCAAG
ACAGGGTAAGCAACATATAGAACACTAAGATTTCCCCTCCAAAATCTTTC
TTTAATTTTATTGAACTATCAACATATTACGTAATTTTAATACATTCAAT
AAGTTTTTGCCTTTTAAAATCTCATTTTAATTCTTTTGGACATTTGTTTT
CCTTATGGTTTCAGTTTTGTTTTCAAAAGTTGTGTGCTAAACTGTCATGT
TGACCTCTTATTTTAGATTCGACCTTTGTGGAGACACTATTTTCAAAATA
CACAAGGTCTTATCTTTGTGGTTGACAGCAATGATCGTGACCGTGTTGTT
GAGGCTAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAGTTGAGGGA
TGCTGTGTTGCTTGTGTTTGCAAACAAACAAGATCTTCCAAATGCAATGA
ATGCTGCCGAGATCACTGACAAGCTTGGCCTTCATTCTCTCCGACAACGT
CACTGGTATATCCAGAGCACTTGTGCCACTTCTGGAGAAGGGCTCTACGA
GGGACTAGACT
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