FC868672

Overview
NameFC868672
Unique NameFC868672
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL2_DROME (ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.190e-17
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            +R  WR+YF++T GL++VVDS DR R+     EL  +L E+ L  A LLV  NKQDLP A+++ EI + L L  +   HW +    A +GE L   +D
Sbjct:   73 LRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGATLLVLCNKQDLPGALSSNEIKEILHLEDITTHHWLVAGVSAVTGEKLLSSMD 170          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL2_DICDI (ADP-ribosylation factor-like protein 2 OS=Dictyostelium discoideum GN=arl2 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.190e-17
Identity = 42/98 (42.86%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            +R  WR+Y++    +I+V+DS+D  R+ + + EL ++L E++   A  LVFANKQDL  AM + EI+  L L  L   HW I S  A +G GL EG+D
Sbjct:   73 LRSYWRNYYEENDAVIWVIDSSDIRRIDDCKFELKKLLEEEKFAGASFLVFANKQDLDGAMTSEEISKYLDLEQLNTHHWEIMSCSAVTGLGLEEGID 170          

HSP 2 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 2
Query:   29 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 199
            +KE+RILM+GLD AGKTTIL K    +I T  PT+GFN++T+ YK     +WD+GGQ
Sbjct:   14 EKELRILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIQTLMYKEYKLNIWDIGGQ 70          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARF5_ARATH (Probable ADP-ribosylation factor At2g18390 OS=Arabidopsis thaliana GN=At2g18390 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.190e-17
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLD 710
            IR  WR+YF+ T GL++VVDS+D  R+ + + EL  +L E+ L  + LL+ ANKQD+  A+   EI   L L S+ + RHW I    A +GEGL EG D
Sbjct:   73 IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLAGSSLLILANKQDIQGALTPDEIGKVLNLESMDKSRHWKIVGCSAYTGEGLLEGFD 171          

HSP 2 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 2
Query:   29 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDRV 208
            +KEMRILMVGLD +GKTTI+ K+   +     PT+GFN++T+ Y+  +  +WDVGGQ  +
Sbjct:   14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIIYQKYTLNIWDVGGQKTI 73          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL4A_RAT (ADP-ribosylation factor-like protein 4A OS=Rattus norvegicus GN=Arl4a PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLD 710
            +RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L     W++Q TCA  G+GL EGL+
Sbjct:   82 LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE 180          

HSP 2 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 2
Query:    2 TKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDRV 208
            T + S L + +   I+++GLD AGKTT+LY+L+  E V T+PT GFN E ++      K ++F  WDVGGQ+++
Sbjct:    9 TSILSSLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKL 82          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL4A_MOUSE (ADP-ribosylation factor-like protein 4A OS=Mus musculus GN=Arl4a PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLD 710
            +RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L     W++Q TCA  G+GL EGL+
Sbjct:   82 LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE 180          

HSP 2 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 2
Query:    2 TKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDRV 208
            T + S L + +   I+++GLD AGKTT+LY+L+  E V T+PT GFN E ++      K ++F  WDVGGQ+++
Sbjct:    9 TSILSSLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKL 82          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL4A_HUMAN (ADP-ribosylation factor-like protein 4A OS=Homo sapiens GN=ARL4A PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLD 710
            +RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L     W++Q TCA  G+GL EGL+
Sbjct:   82 LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE 180          

HSP 2 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 2
Query:    2 TKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDRV 208
            T + S L + +   I+++GLD AGKTT+LY+L+  E V T+PT GFN E ++      K ++F  WDVGGQ+++
Sbjct:    9 TSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKL 82          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL4A_BOVIN (ADP-ribosylation factor-like protein 4A OS=Bos taurus GN=ARL4A PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLD 710
            +RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L     W++Q TCA  G+GL EGL+
Sbjct:   82 LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE 180          

HSP 2 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 2
Query:    2 TKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDRV 208
            T + S L + +   I+++GLD AGKTT+LY+L+  E V T+PT GFN E ++      K ++F  WDVGGQ+++
Sbjct:    9 TSILSSLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKL 82          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL6_PONAB (ADP-ribosylation factor-like protein 6 OS=Pongo abelii GN=ARL6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.072e-16
Identity = 41/99 (41.41%), Postives = 67/99 (67.68%), Query Frame = 3
Query:  420 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            R LW HY++  Q +IFV+DS+DR R+V A++EL  +LN  ++  R   +L FANK DL +A+ + +++  L L +++ + W+I ++ A  GEGL EG+D
Sbjct:   77 RNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVD 175          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL6_HUMAN (ADP-ribosylation factor-like protein 6 OS=Homo sapiens GN=ARL6 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.072e-16
Identity = 41/99 (41.41%), Postives = 67/99 (67.68%), Query Frame = 3
Query:  420 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            R LW HY++  Q +IFV+DS+DR R+V A++EL  +LN  ++  R   +L FANK DL +A+ + +++  L L +++ + W+I ++ A  GEGL EG+D
Sbjct:   77 RNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVD 175          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL6_MOUSE (ADP-ribosylation factor-like protein 6 OS=Mus musculus GN=Arl6 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.240e-16
Identity = 40/99 (40.40%), Postives = 68/99 (68.69%), Query Frame = 3
Query:  420 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            R LW HY+++ Q +IFV+DS+D+ R+V A++EL  +LN  ++  R   +L FANK DL +++ + +++  L L S++ + W+I ++ A  GEGL EG+D
Sbjct:   77 RNLWEHYYKDGQAIIFVIDSSDKLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDSVTSVKVSQLLCLESIKDKPWHICASDAIKGEGLQEGVD 175          
The following BLAST results are available for this feature:
BLAST of FC868672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
ARL2_DROME6.190e-1742.86ADP-ribosylation factor-like protein 2 OS=Drosophi... [more]
ARL2_DICDI6.190e-1742.86ADP-ribosylation factor-like protein 2 OS=Dictyost... [more]
ARF5_ARATH6.190e-1745.45Probable ADP-ribosylation factor At2g18390 OS=Arab... [more]
ARL4A_RAT1.056e-1643.43ADP-ribosylation factor-like protein 4A OS=Rattus ... [more]
ARL4A_MOUSE1.056e-1643.43ADP-ribosylation factor-like protein 4A OS=Mus mus... [more]
ARL4A_HUMAN1.056e-1643.43ADP-ribosylation factor-like protein 4A OS=Homo sa... [more]
ARL4A_BOVIN1.056e-1643.43ADP-ribosylation factor-like protein 4A OS=Bos tau... [more]
ARL6_PONAB3.072e-1641.41ADP-ribosylation factor-like protein 6 OS=Pongo ab... [more]
ARL6_HUMAN3.072e-1641.41ADP-ribosylation factor-like protein 6 OS=Homo sap... [more]
ARL6_MOUSE5.240e-1640.40ADP-ribosylation factor-like protein 6 OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionC31003C12EF AbioticL1 Citrus clementina cDNA clone C31003C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868672 ID=FC868672; Name=FC868672; organism=Citrus clementina; type=EST; length=711bp
CACCAAGCTTTTCAGTAAGTTATTTGCAAAGAAGGAGATGCGAATTCTTA
TGGTTGGTCTTGATGCAGCTGGTAAAACCACAATTTTATATAAGCTTAAG
TTAGGGGAGATCGTTACCACCATCCCCACCATTGGTTTCAATGTGGAGAC
TGTGGAATACAAGAATATTAGCTTCACTGTCTGGGATGTTGGAGGTCAAG
ACAGGGTAAGCAACATATAGAACACTAAGATTTCCCCTCCAAAATCTTTC
TTTAATTTTATTGAACTATCAACATATTACGTAATTTTAATACATTCAAT
AAGTTTTTGCCTTTTAAAATCTCATTTTAATTCTTTTGGACATTTGTTTT
CCTTATGGTTTCAGTTTTGTTTTCAAAAGTTGTGTGCTAAACTGTCATGT
TGACCTCTTATTTTAGATTCGACCTTTGTGGAGACACTATTTTCAAAATA
CACAAGGTCTTATCTTTGTGGTTGACAGCAATGATCGTGACCGTGTTGTT
GAGGCTAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAGTTGAGGGA
TGCTGTGTTGCTTGTGTTTGCAAACAAACAAGATCTTCCAAATGCAATGA
ATGCTGCCGAGATCACTGACAAGCTTGGCCTTCATTCTCTCCGACAACGT
CACTGGTATATCCAGAGCACTTGTGCCACTTCTGGAGAAGGGCTCTACGA
GGGACTAGACT
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