FC868672

Overview
NameFC868672
Unique NameFC868672
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL11_MOUSE (ADP-ribosylation factor-like protein 11 OS=Mus musculus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 34/61 (55.74%), Postives = 50/61 (81.97%), Query Frame = 2
Query:   29 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDRV 208
            K E +++M+GLD+AGKTTILYKLK  ++V T+PT+GFNVE +E   ++S T+WD+GGQ ++
Sbjct:   10 KAEAQVVMMGLDSAGKTTILYKLKGNQLVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQTQL 70          

HSP 2 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 34/97 (35.05%), Postives = 55/97 (56.70%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 707
            +R  W+ Y +    L++V+DS D  R+ EA  EL  +L +  +     LV ANKQ+ P A+   EI ++LGL   ++  W +++  A +G+GL E L
Sbjct:   70 LRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELKEVLEDPNMAGVPFLVLANKQEAPGALPLLEIRNRLGLEGFQKHCWELRACSALTGQGLQEAL 166          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL3_PONAB (ADP-ribosylation factor-like protein 3 OS=Pongo abelii GN=ARL3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            IRP W++YF+NT  L                 EL  +L E++L    +L+FANKQDL  A  A+EI + L LH++R R W IQS  A +GEG+ +G++
Sbjct:   74 IRPYWKNYFENTDIL-----------------ELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN 154          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL11_HUMAN (ADP-ribosylation factor-like protein 11 OS=Homo sapiens GN=ARL11 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 33/58 (56.90%), Postives = 48/58 (82.76%), Query Frame = 2
Query:   29 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQ 199
            K E +++M+GLD+AGKTT+LYKLK  ++V T+PT+GFNVE ++   ++S T+WDVGGQ
Sbjct:   10 KAEAQVVMMGLDSAGKTTLLYKLKGHQLVETLPTVGFNVEPLKAPGHVSLTLWDVGGQ 67          

HSP 2 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 34/97 (35.05%), Postives = 55/97 (56.70%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 707
            +R  W+ Y + T  L++V+DS D  R+ E+  EL  +LN+  +     LV ANKQ+ P+A+   +I ++L L   +   W ++   A +GEGL E L
Sbjct:   70 LRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGVPFLVLANKQEAPDALPLLKIRNRLSLERFQDHCWELRGCSALTGEGLPEAL 166          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL11_RAT (ADP-ribosylation factor-like protein 11 OS=Rattus norvegicus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 32/57 (56.14%), Postives = 46/57 (80.70%), Query Frame = 2
Query:   41 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDRV 208
            +++M+GLD AGKTTILYKLK   +V T+PT+GFNVE +E   ++S T+WD+GGQ ++
Sbjct:   12 QVVMLGLDCAGKTTILYKLKGNRLVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQTQL 68          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARF_ENCCU (ADP-ribosylation factor OS=Encephalitozoon cuniculi GN=ARF-1 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 2
Query:    2 TKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 202
            TKL      + E  I M+GLD AGKTT+L  L+ GE+  T+PT+GFN E V   ++ F VWD+GGQ+
Sbjct:   14 TKLRGLFSGQSERSITMIGLDGAGKTTLLLYLQTGEVHQTVPTLGFNCENVTLGSMKFQVWDIGGQN 80          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARL_SCHPO (ADP-ribosylation factor-like protein alp41 OS=Schizosaccharomyces pombe GN=alp41 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 34/97 (35.05%), Postives = 59/97 (60.82%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 707
            +R  W++YF++T+ +I+VVDS D  R+ E R+ L  +L E++L    +LV ANK D+  A+++ EI+  L +   +  HW I S  A +G  + + +
Sbjct:   73 LRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAI 169          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: AR8BA_DANRE (ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 26/77 (33.77%), Postives = 53/77 (68.83%), Query Frame = 3
Query:  420 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 650
            R +W  Y +    ++++VD+ DR++V  +R+ELH +L++ +L+   +LV  NK+DLPNA++  ++ +K+ L +++ R
Sbjct:   79 RSMWERYCRGVNAIVYMVDAADREKVEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLAAIQDR 155          
The following BLAST results are available for this feature:
BLAST of FC868672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
ARL11_MOUSE3.179e-1355.74ADP-ribosylation factor-like protein 11 OS=Mus mus... [more]
ARL3_PONAB7.082e-1340.82ADP-ribosylation factor-like protein 3 OS=Pongo ab... [more]
ARL11_HUMAN2.691e-1256.90ADP-ribosylation factor-like protein 11 OS=Homo sa... [more]
ARL11_RAT5.996e-1256.14ADP-ribosylation factor-like protein 11 OS=Rattus ... [more]
ARF_ENCCU5.996e-1249.25ADP-ribosylation factor OS=Encephalitozoon cunicul... [more]
ARL_SCHPO1.023e-1135.05ADP-ribosylation factor-like protein alp41 OS=Schi... [more]
AR8BA_DANRE8.658e-1133.77ADP-ribosylation factor-like protein 8B-A OS=Danio... [more]

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Properties
Property NameValue
Genbank descriptionC31003C12EF AbioticL1 Citrus clementina cDNA clone C31003C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868672 ID=FC868672; Name=FC868672; organism=Citrus clementina; type=EST; length=711bp
CACCAAGCTTTTCAGTAAGTTATTTGCAAAGAAGGAGATGCGAATTCTTA
TGGTTGGTCTTGATGCAGCTGGTAAAACCACAATTTTATATAAGCTTAAG
TTAGGGGAGATCGTTACCACCATCCCCACCATTGGTTTCAATGTGGAGAC
TGTGGAATACAAGAATATTAGCTTCACTGTCTGGGATGTTGGAGGTCAAG
ACAGGGTAAGCAACATATAGAACACTAAGATTTCCCCTCCAAAATCTTTC
TTTAATTTTATTGAACTATCAACATATTACGTAATTTTAATACATTCAAT
AAGTTTTTGCCTTTTAAAATCTCATTTTAATTCTTTTGGACATTTGTTTT
CCTTATGGTTTCAGTTTTGTTTTCAAAAGTTGTGTGCTAAACTGTCATGT
TGACCTCTTATTTTAGATTCGACCTTTGTGGAGACACTATTTTCAAAATA
CACAAGGTCTTATCTTTGTGGTTGACAGCAATGATCGTGACCGTGTTGTT
GAGGCTAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAGTTGAGGGA
TGCTGTGTTGCTTGTGTTTGCAAACAAACAAGATCTTCCAAATGCAATGA
ATGCTGCCGAGATCACTGACAAGCTTGGCCTTCATTCTCTCCGACAACGT
CACTGGTATATCCAGAGCACTTGTGCCACTTCTGGAGAAGGGCTCTACGA
GGGACTAGACT
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