FC868672

Overview
NameFC868672
Unique NameFC868672
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 6.161e-33
Identity = 64/100 (64.00%), Postives = 82/100 (82.00%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            IRPLWRHY+QNT  LI+V+DS D +  R+ +A++ELH +L EDELRDA LLVFANKQDLP AM+  ++T++LGL  L++R WYIQ TCA SG+GLY+GLD
Sbjct:   74 IRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGEDELRDAALLVFANKQDLPKAMSTTDLTERLGLQELKKRDWYIQPTCARSGDGLYQGLD 173          

HSP 2 Score: 124.79 bits (312), Expect = 4.569e-28
Identity = 58/69 (84.06%), Postives = 66/69 (95.65%), Query Frame = 2
Query:    2 TKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDRV 208
            +K+F KLF+KKE+RILMVGLDAAGKTTILYKL LGE+VTT+PTIGFNVETVEYKNI+FTVWDVGGQD +
Sbjct:    6 SKIFGKLFSKKEVRILMVGLDAAGKTTILYKLMLGEVVTTVPTIGFNVETVEYKNINFTVWDVGGQDSI 74          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARF4_ARATH (Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 2.589e-31
Identity = 65/98 (66.33%), Postives = 79/98 (80.61%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            IR LWRHYFQN QGLIFVVDS+D +R+ EAR+ELHR+L ++EL  A +LVFANKQD  NA+  AE+ +KLGLHSL +R W IQ T A SG+GLYEGL+
Sbjct:   74 IRKLWRHYFQNAQGLIFVVDSSDSERLSEARNELHRILTDNELEGACVLVFANKQDSRNALPVAEVANKLGLHSLSKRCWLIQGTSAISGQGLYEGLE 171          

HSP 2 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 46/72 (63.89%), Postives = 62/72 (86.11%), Query Frame = 2
Query:    2 TKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDRVSNI 217
            +++  +   K ++RILMVGLD +GKTTILYKLKLGE+VTT+PTIGFN+ETVEYK I+FTVWD+GGQ+++  +
Sbjct:    6 SRIAKRFLPKSKVRILMVGLDGSGKTTILYKLKLGEVVTTVPTIGFNLETVEYKGINFTVWDIGGQEKIRKL 77          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.164e-29
Identity = 60/97 (61.86%), Postives = 76/97 (78.35%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 707
            IRPLWRHYF  T+GLIFVVDS D +R+ EAR ELHR++++ E+RD +LLV ANKQDLP A++ A+ITD L L  L+ R W +Q TCA +G+GL EGL
Sbjct:   78 IRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGL 174          

HSP 2 Score: 113.235 bits (282), Expect = 1.376e-24
Identity = 53/69 (76.81%), Postives = 61/69 (88.41%), Query Frame = 2
Query:    2 TKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDRV 208
            +K FS+LF+ KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F VWDVGGQD++
Sbjct:   10 SKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKI 78          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.051e-28
Identity = 57/98 (58.16%), Postives = 74/98 (75.51%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            IRP WR YF NTQ +I+VVDS+D DR+  A++E H +L EDEL+ AV+L+FANKQDLP A++ A +T+ L LH ++ R W I  TCA  GEGL+EGLD
Sbjct:   74 IRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLD 171          

HSP 2 Score: 103.605 bits (257), Expect = 1.090e-21
Identity = 46/69 (66.67%), Postives = 59/69 (85.51%), Query Frame = 2
Query:    2 TKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDRV 208
            T++FS +F  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  +
Sbjct:    6 TRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 5.968e-28
Identity = 56/98 (57.14%), Postives = 74/98 (75.51%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            IRP WR YF NTQ +I+VVDS+D DR+  A++E H +L E+EL+ AV+L+FANKQDLP A++ A +T+ L LH ++ R W I  TCA  GEGL+EGLD
Sbjct:   74 IRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLD 171          

HSP 2 Score: 103.605 bits (257), Expect = 1.090e-21
Identity = 46/69 (66.67%), Postives = 59/69 (85.51%), Query Frame = 2
Query:    2 TKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDRV 208
            T++FS +F  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  +
Sbjct:    6 TRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 59/99 (59.60%), Postives = 74/99 (74.75%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLD 710
            +RPLW+HY+ NTQ ++FVVDS+ RDR+ EA  EL ++L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLD
Sbjct:  441 LRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLD 539          

HSP 2 Score: 85.1149 bits (209), Expect = 4.012e-16
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 2
Query:   29 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDRV 208
            K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVG + ++
Sbjct:  382 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGEKHKL 441          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 59/99 (59.60%), Postives = 74/99 (74.75%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLD 710
            +RPLW+HY+ NTQ ++FVVDS+ RDR+ EA  EL ++L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLD
Sbjct:  461 LRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLD 559          

HSP 2 Score: 88.1965 bits (217), Expect = 4.740e-17
Identity = 39/60 (65.00%), Postives = 50/60 (83.33%), Query Frame = 2
Query:   29 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDRV 208
            K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVGG+ ++
Sbjct:  402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKL 461          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 59/99 (59.60%), Postives = 74/99 (74.75%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLD 710
            +RPLW+HY+ NTQ ++FVVDS+ RDR+ EA  EL ++L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLD
Sbjct:  461 LRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLD 559          

HSP 2 Score: 88.1965 bits (217), Expect = 4.740e-17
Identity = 39/60 (65.00%), Postives = 50/60 (83.33%), Query Frame = 2
Query:   29 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDRV 208
            K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVGG+ ++
Sbjct:  402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKL 461          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARF11_CAEEL (ADP-ribosylation factor 1-like 1 OS=Caenorhabditis elegans GN=arf-1.1 PE=3 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 2.123e-25
Identity = 57/97 (58.76%), Postives = 73/97 (75.26%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 707
            IR LW++YF NT  L+FVVDS+D +R+ EA++EL  +L E EL D+ LLVFANKQD+PNA + AE+T  L L SL+ R W+I  T A SG+GLYEGL
Sbjct:   74 IRALWKYYFPNTTTLVFVVDSSDIERIPEAKEELFSLLAEPELADSHLLVFANKQDMPNARSPAELTQLLDLGSLKNREWFICGTNAHSGQGLYEGL 170          

HSP 2 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 2
Query:    2 TKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDRV 208
            +K+ S +F   E R LM+GLD AGKTTILYKLKL E V TIPTIGFNVETV ++ I+ TVWDVGGQ ++
Sbjct:    6 SKISSFMFPNIECRTLMLGLDGAGKTTILYKLKLNETVNTIPTIGFNVETVTFQKITLTVWDVGGQKKI 74          
BLAST of FC868672 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.621e-25
Identity = 50/98 (51.02%), Postives = 71/98 (72.45%), Query Frame = 3
Query:  417 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 710
            IRPLW+HY+  +  +IFVVDS DR+R+ E ++E+  +L +DEL+   +LVFANKQD+ NAMN AEI + L L+S++ R WY+Q   A   +G+YEG D
Sbjct:   82 IRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDRKWYVQPCSAIRSDGIYEGFD 179          

HSP 2 Score: 107.457 bits (267), Expect = 7.549e-23
Identity = 48/69 (69.57%), Postives = 60/69 (86.96%), Query Frame = 2
Query:    2 TKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDRV 208
            + +FS    KKE RILM+GLD AGK+T+LYKLKLG++V+TIPTIGFNVET+EYKN+S TVWDVGGQ ++
Sbjct:   14 SNIFSLFEGKKETRILMIGLDGAGKSTLLYKLKLGDVVSTIPTIGFNVETIEYKNLSMTVWDVGGQHKI 82          
The following BLAST results are available for this feature:
BLAST of FC868672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
ARF_GIALA6.161e-3364.00ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF4_ARATH2.589e-3166.33Probable ADP-ribosylation factor At2g15310 OS=Arab... [more]
ARF2_SCHPO3.164e-2961.86Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARF3_ARATH2.051e-2858.16ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF1_BRARP5.968e-2857.14ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARD1_RAT5.052e-2759.60GTP-binding protein ARD-1 (Fragment) OS=Rattus nor... [more]
ARD1_MOUSE5.052e-2759.60GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2... [more]
ARD1_HUMAN5.052e-2759.60GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]
ARF11_CAEEL2.123e-2558.76ADP-ribosylation factor 1-like 1 OS=Caenorhabditis... [more]
ARFJ_DICDI3.621e-2551.02ADP-ribosylation factor J OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC31003C12EF AbioticL1 Citrus clementina cDNA clone C31003C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868672 ID=FC868672; Name=FC868672; organism=Citrus clementina; type=EST; length=711bp
CACCAAGCTTTTCAGTAAGTTATTTGCAAAGAAGGAGATGCGAATTCTTA
TGGTTGGTCTTGATGCAGCTGGTAAAACCACAATTTTATATAAGCTTAAG
TTAGGGGAGATCGTTACCACCATCCCCACCATTGGTTTCAATGTGGAGAC
TGTGGAATACAAGAATATTAGCTTCACTGTCTGGGATGTTGGAGGTCAAG
ACAGGGTAAGCAACATATAGAACACTAAGATTTCCCCTCCAAAATCTTTC
TTTAATTTTATTGAACTATCAACATATTACGTAATTTTAATACATTCAAT
AAGTTTTTGCCTTTTAAAATCTCATTTTAATTCTTTTGGACATTTGTTTT
CCTTATGGTTTCAGTTTTGTTTTCAAAAGTTGTGTGCTAAACTGTCATGT
TGACCTCTTATTTTAGATTCGACCTTTGTGGAGACACTATTTTCAAAATA
CACAAGGTCTTATCTTTGTGGTTGACAGCAATGATCGTGACCGTGTTGTT
GAGGCTAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAGTTGAGGGA
TGCTGTGTTGCTTGTGTTTGCAAACAAACAAGATCTTCCAAATGCAATGA
ATGCTGCCGAGATCACTGACAAGCTTGGCCTTCATTCTCTCCGACAACGT
CACTGGTATATCCAGAGCACTTGTGCCACTTCTGGAGAAGGGCTCTACGA
GGGACTAGACT
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