FC868675

Overview
NameFC868675
Unique NameFC868675
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868675 vs. ExPASy Swiss-Prot
Match: GNAT3_HUMAN (Guanine nucleotide-binding protein G(t) subunit alpha-3 OS=Homo sapiens GN=GNAT3 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 47/153 (30.72%), Postives = 72/153 (47.06%), Query Frame = 3
Query:    3 FLERLVDISRTDYEPSDLDILYAEAVTSSNGLACVDFSFPHSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLFEEKIENVPLNQC 461
            +L  L  I+ + Y P++ D+L++   T+  G+    FSF                  L +++  V  +   E  KW+  FE +  +IFC ALS YD   V+     +N+M  S   F SI  H  F     +L LNK D+F+EK+  V L+ C
Sbjct:  155 YLNDLDRITASGYVPNEQDVLHSRVKTT--GIIETQFSFKD----------------LHFRMFDVGGQR-SERKKWIHCFEGVTCIIFCAALSAYDMVLVEDEE--VNRMHESLHLFNSICNHKYFSTTSIVLFLNKKDIFQEKVTKVHLSIC 286          
BLAST of FC868675 vs. ExPASy Swiss-Prot
Match: GNAQ_GEOCY (Guanine nucleotide-binding protein G(q) subunit alpha OS=Geodia cydonium PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 48/159 (30.19%), Postives = 80/159 (50.31%), Query Frame = 3
Query:    3 FLERLVDISRTDYEPSDLDILYAEAVTSSNGLACVDFSFPHSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLFEEKIENVPLNQCDWFDDF 479
            +L+ L  IS  DY P+  D+L     T+  G+    F+  +      VD   Q                  E  KW+  F+ +  V+F VA+S+YDQ  V+ + S +N+M+ S   F +I+++P F++   +L LNK DL EEK+ +  L   D+F+++
Sbjct:  154 YLDDLPRISSNDYVPTTQDVLRVRVPTT--GINEYPFTI-NKIIFKMVDVGGQRS----------------ERRKWIHCFDHVTSVMFLVAISEYDQILVEAD-SRVNRMVESLHLFNTIISYPWFNKSSIILFLNKKDLLEEKVMHSHL--IDYFEEY 290          
BLAST of FC868675 vs. ExPASy Swiss-Prot
Match: GPA4_CAEEL (Guanine nucleotide-binding protein alpha-4 subunit OS=Caenorhabditis elegans GN=gpa-4 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 3
Query:  216 ENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLFEEKIENVPLNQC 461
            E  KW+  F+ +  VIFCVALS+YD    +     MN+M  S + F+SIV +  F +   +L LNK D+FEE+I   PL  C
Sbjct:  210 ERKKWIHCFDSVTAVIFCVALSEYDLRLAEDQ--TMNRMHESMQLFDSIVNNCWFTETSIILFLNKMDIFEERIRYTPLTVC 289          
BLAST of FC868675 vs. ExPASy Swiss-Prot
Match: GPA11_CAEEL (Guanine nucleotide-binding protein alpha-11 subunit OS=Caenorhabditis elegans GN=gpa-11 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 47/161 (29.19%), Postives = 76/161 (47.20%), Query Frame = 3
Query:    3 FLERLVDISRTDYEPSDLDILYAEAVTSSNGLACVDFSFPHSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVD-------GNGSLMNKMMLSRKFFESIVTHPTFDQME-FLLILNKYDLFEEKIENVPLNQC 461
            FL+ +  IS  +Y+P+++D+L A   T+  G+  ++F F   AS   VD   Q                  E  KW+  F+++  V+F  A+S Y+ +  D       G  +  N++  S + F+ I  H  F +    +L LNK D+F+EKI   PL  C
Sbjct:  152 FLDDIDRISAHEYKPTEMDVLRARVPTT--GITEIEFPFKQ-ASLRMVDVGGQRS----------------EQRKWIHCFDNVNGVLFIAAISGYNLYDEDEENRKDDGTPTKTNRLRYSMELFKRIANHQCFSKKTAMILFLNKIDIFKEKIGKYPLTTC 293          
BLAST of FC868675 vs. ExPASy Swiss-Prot
Match: GNAT3_BOVIN (Guanine nucleotide-binding protein G(t) subunit alpha-3 OS=Bos taurus GN=GNAT3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 48/153 (31.37%), Postives = 71/153 (46.41%), Query Frame = 3
Query:    3 FLERLVDISRTDYEPSDLDILYAEAVTSSNGLACVDFSFPHSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLFEEKIENVPLNQC 461
            +L  L  I+   Y P++ D+L++   T+  G+    FSF                  L +++  V  +   E  KW+  FE +  +IFC ALS YD   V+     +N+M  S   F SI  H  F     +L LNK DLF+EK+  V L+ C
Sbjct:  155 YLNDLDRIAAPGYVPNEQDVLHSRVKTT--GIIETQFSFKD----------------LHFRMFDVGGQR-SERKKWIHCFEGVTCIIFCAALSAYDMVLVEDEE--VNRMHESLHLFNSICNHKYFATTSIVLFLNKKDLFQEKVTKVHLSIC 286          
BLAST of FC868675 vs. ExPASy Swiss-Prot
Match: GNAQ_PATYE (Guanine nucleotide-binding protein G(q) subunit alpha OS=Patinopecten yessoensis GN=SCGQA PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 3
Query:  216 ENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLFEEKIENVPLNQCDWFDDF 479
            E  KW+  FE++  ++F VALS+YDQ  V+ +    N+M  S+  F +I+T+P F     +L LNK DL EEKI +  L   D+F +F
Sbjct:  206 ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNE--NRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMHSHL--VDYFPEF 289          
BLAST of FC868675 vs. ExPASy Swiss-Prot
Match: GNAQ_LOLFO (Guanine nucleotide-binding protein G(q) subunit alpha OS=Loligo forbesi PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 3
Query:  216 ENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLFEEKIENVPLNQCDWFDDF 479
            E  KW+  FE++  ++F VALS+YDQ  V+ +    N+M  S+  F +I+T+P F     +L LNK DL EEKI    L   D+F D+
Sbjct:  206 ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNE-ENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMTSHL--ADYFPDY 290          
BLAST of FC868675 vs. ExPASy Swiss-Prot
Match: GNAT3_RAT (Guanine nucleotide-binding protein G(t) subunit alpha-3 OS=Rattus norvegicus GN=Gnat3 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 47/153 (30.72%), Postives = 71/153 (46.41%), Query Frame = 3
Query:    3 FLERLVDISRTDYEPSDLDILYAEAVTSSNGLACVDFSFPHSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLFEEKIENVPLNQC 461
            +L  L  ++   Y P++ D+L++   T+  G+    FSF                  L +++  V  +   E  KW+  FE +  +IFC ALS YD   V+     +N+M  S   F SI  H  F     +L LNK DLF+EK+  V L+ C
Sbjct:  155 YLNDLDRLTAPGYVPNEQDVLHSRVKTT--GIIETQFSFKD----------------LNFRMFDVGGQR-SERKKWIHCFEGVTCIIFCAALSAYDMVLVEDEE--VNRMHESLHLFNSICNHKYFATTSIVLFLNKKDLFQEKVTKVHLSIC 286          
BLAST of FC868675 vs. ExPASy Swiss-Prot
Match: GNAT3_MOUSE (Guanine nucleotide-binding protein G(t) subunit alpha-3 OS=Mus musculus GN=Gnat3 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 47/153 (30.72%), Postives = 71/153 (46.41%), Query Frame = 3
Query:    3 FLERLVDISRTDYEPSDLDILYAEAVTSSNGLACVDFSFPHSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLFEEKIENVPLNQC 461
            +L  L  ++   Y P++ D+L++   T+  G+    FSF                  L +++  V  +   E  KW+  FE +  +IFC ALS YD   V+     +N+M  S   F SI  H  F     +L LNK DLF+EK+  V L+ C
Sbjct:  155 YLNDLDRLTAPGYVPNEQDVLHSRVKTT--GIIETQFSFKD----------------LNFRMFDVGGQR-SERKKWIHCFEGVTCIIFCAALSAYDMVLVEDEE--VNRMHESLHLFNSICNHKYFATTSIVLFLNKKDLFQEKVAKVHLSIC 286          
BLAST of FC868675 vs. ExPASy Swiss-Prot
Match: GNAT2_MOUSE (Guanine nucleotide-binding protein G(t) subunit alpha-2 OS=Mus musculus GN=Gnat2 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 49/153 (32.03%), Postives = 73/153 (47.71%), Query Frame = 3
Query:    3 FLERLVDISRTDYEPSDLDILYAEAVTSSNGLACVDFSFPHSASDDSVDTADQHDSLLRYQLIRVQARGLGENCKWLEMFEDIGMVIFCVALSDYDQFSVDGNGSLMNKMMLSRKFFESIVTHPTFDQMEFLLILNKYDLFEEKIENVPLNQC 461
            +L +L  I+  +Y P++ D+L +   T+  G+    FS                   L +++  V  +   E  KW+  FE +  +IFC ALS YD   V+ +   +N+M  S   F SI  H  F     +L LNK DLFEEKI+ V L+ C
Sbjct:  155 YLNQLDRITDPNYLPNEQDVLRSRVKTT--GIIETKFSVKD----------------LNFRMFDVGGQR-SERKKWIHCFEGVTCIIFCAALSAYDMVLVEDDE--VNRMHESLHLFNSICNHKFFAATSIVLFLNKKDLFEEKIKKVHLSIC 286          
The following BLAST results are available for this feature:
BLAST of FC868675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
GNAT3_HUMAN3.035e-1130.72Guanine nucleotide-binding protein G(t) subunit al... [more]
GNAQ_GEOCY3.035e-1130.19Guanine nucleotide-binding protein G(q) subunit al... [more]
GPA4_CAEEL3.964e-1142.68Guanine nucleotide-binding protein alpha-4 subunit... [more]
GPA11_CAEEL3.964e-1129.19Guanine nucleotide-binding protein alpha-11 subuni... [more]
GNAT3_BOVIN5.178e-1131.37Guanine nucleotide-binding protein G(t) subunit al... [more]
GNAQ_PATYE6.762e-1140.91Guanine nucleotide-binding protein G(q) subunit al... [more]
GNAQ_LOLFO6.762e-1140.91Guanine nucleotide-binding protein G(q) subunit al... [more]
GNAT3_RAT8.832e-1130.72Guanine nucleotide-binding protein G(t) subunit al... [more]
GNAT3_MOUSE8.832e-1130.72Guanine nucleotide-binding protein G(t) subunit al... [more]
GNAT2_MOUSE8.832e-1132.03Guanine nucleotide-binding protein G(t) subunit al... [more]

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Properties
Property NameValue
Genbank descriptionC31003D04EF AbioticL1 Citrus clementina cDNA clone C31003D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868675 ID=FC868675; Name=FC868675; organism=Citrus clementina; type=EST; length=723bp
ATTTCCTAGAGCGTCTTGTTGATATATCGAGAACAGACTATGAGCCTTCA
GATTTGGATATTCTATATGCTGAGGCTGTCACTTCATCAAATGGGCTTGC
TTGTGTGGACTTCTCATTTCCCCACTCAGCTTCTGATGATTCTGTTGACA
CTGCTGATCAGCATGACTCTTTGCTTAGATACCAACTTATTAGAGTCCAG
GCAAGAGGTCTTGGGGAAAACTGCAAGTGGCTAGAGATGTTTGAAGACAT
TGGAATGGTCATTTTCTGTGTTGCCTTGAGTGACTATGACCAATTTTCTG
TTGACGGGAATGGGTCACTTATGAACAAGATGATGCTGAGCAGGAAATTC
TTTGAAAGCATTGTTACACATCCAACTTTTGATCAGATGGAATTTCTTTT
GATACTAAACAAATATGATCTGTTTGAGGAAAAAATAGAAAATGTACCGT
TGAACCAGTGCGACTGGTTTGATGATTTTCATCCAGTGATCAGCCGTCAT
CACCCCAATGGCAACAGAAACAGCAACAACATCAATCATAGCCCCTCACT
AGGTCAGCTGGCTTCCCACTATGTTGCTGTCAAGTTCAAGAGGCTTTATT
CATCTCTCACTGGGCGGAAATTGTATGTTTCCCCTGGTGAGGGATTGGAG
CCTAATAGTGTTGATGCTGCTCTTAAAAATGCAGGGAGGTTCTAAAGTGG
GATGAAGAGAAAACATCTTTAGC
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