FC868680

Overview
NameFC868680
Unique NameFC868680
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868680 vs. ExPASy Swiss-Prot
Match: DAPB_SYNP6 (Dihydrodipicolinate reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dapB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.349e-27
Identity = 67/157 (42.68%), Postives = 98/157 (62.42%), Query Frame = 2
Query:  104 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI--DSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE 568
            I V++NGA  ++GR  + A+  A  + + GAI   +   G+DIG +  +  PLE+PV +DL  +L   SQ +   VV+DFT    +YDNV++A A+G+R VV    +  E +  L+ F +KAS+GCL+ P  SIG +LL QAAI AS  Y +VEI+E
Sbjct:    5 IPVVVNGATGKMGRETIKAIAAADDVTLVGAIARSADVQGQDIGEIVGLG-PLEVPVTNDLEGMLCLASQEREVPVVVDFTHPDCIYDNVRKAIAYGVRPVVGTTGLNNEQLQELAEFAEKASVGCLVIPNFSIGMVLLMQAAIQASRFYDHVEILE 160          
BLAST of FC868680 vs. ExPASy Swiss-Prot
Match: DAPB_SYNE7 (Dihydrodipicolinate reductase OS=Synechococcus elongatus (strain PCC 7942) GN=dapB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.349e-27
Identity = 67/157 (42.68%), Postives = 98/157 (62.42%), Query Frame = 2
Query:  104 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI--DSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE 568
            I V++NGA  ++GR  + A+  A  + + GAI   +   G+DIG +  +  PLE+PV +DL  +L   SQ +   VV+DFT    +YDNV++A A+G+R VV    +  E +  L+ F +KAS+GCL+ P  SIG +LL QAAI AS  Y +VEI+E
Sbjct:    5 IPVVVNGATGKMGRETIKAIAAADDVTLVGAIARSADVQGQDIGEIVGLG-PLEVPVTNDLEGMLCLASQEREVPVVVDFTHPDCIYDNVRKAIAYGVRPVVGTTGLNNEQLQELAEFAEKASVGCLVIPNFSIGMVLLMQAAIQASRFYDHVEILE 160          
BLAST of FC868680 vs. ExPASy Swiss-Prot
Match: DAPB_THEEB (Dihydrodipicolinate reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=dapB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.914e-26
Identity = 69/170 (40.59%), Postives = 98/170 (57.65%), Query Frame = 2
Query:   77 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR 586
            C + P    I VI+ GA+ ++GR  V AV +A    +  A+D   VGEDIG    +   LEIP+   L  V  + +Q K   V++DFT    VY+NV+ A A+G+  VV    +  E +  L+ F DKA MG +IAP  SIG +LLQ+AAI AS ++ +VEI+E   N +
Sbjct:    5 CMSTP----ISVIVVGALGKMGREVVKAVHQAPDTALYAAVDRKQVGEDIGEALGLGT-LEIPISGSLQEVCVAAAQEKQPVVMVDFTHPQAVYENVRMAIAYGVYPVVGTTGLSPEQIEELAEFADKADMGAVIAPNFSIGMVLLQEAAIRASQYFDHVEIIELHHNQK 169          
BLAST of FC868680 vs. ExPASy Swiss-Prot
Match: DAPB_SYNP2 (Dihydrodipicolinate reductase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dapB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.007e-25
Identity = 67/174 (38.51%), Postives = 103/174 (59.20%), Query Frame = 2
Query:   98 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLI 613
            + I V+INGA  ++GR  V AV  A  ME+  A+D +   +G+D G +      +E+P+++DL   L   +QSK + V++DFT  S VY N + A A+G+R VV    +  E ++ L  F +KAS G LI P  SIG +LLQQA++ A+ ++ +VEI+E   N +    + T I
Sbjct:    5 NKIPVVINGAGGKMGREVVKAVAGAADMEIIAAVDKNPALLGQDAGEIAGCGA-VEVPIVNDLEASLVMATQSKIQGVMVDFTHPSGVYANTRAAIAYGVRPVVGTTGLSEEQINDLKEFAEKASTGALIIPNFSIGVVLLQQASLQAAKYFDHVEIIELHHNQKADAPSGTAI 177          
BLAST of FC868680 vs. ExPASy Swiss-Prot
Match: DAPB_GLOVI (Dihydrodipicolinate reductase OS=Gloeobacter violaceus GN=dapB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.700e-25
Identity = 60/161 (37.27%), Postives = 95/161 (59.01%), Query Frame = 2
Query:  104 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR 586
            I V++ G   ++GR  V AV  A  M V GA+D   + ED G +  +  P+++ V  +L +    ++Q +A  V++DFT    +YD V+ A A+G+R VV    +  E +  L+ F DKAS GC++AP  +IG ILLQQA + A+ ++ +VEI+E   N +
Sbjct:    3 IPVVVVGCAGKMGREVVKAVHAAPDMAVVGAVDRSHIDEDAGELAGIG-PIDVLVTDNLEITCAMVAQERAPGVMVDFTHPRGIYDRVRSAIAYGVRPVVGTTGLPPEHIEELAEFADKASTGCIVAPNFAIGMILLQQACLRAAEYFDHVEIIELHHNRK 162          
BLAST of FC868680 vs. ExPASy Swiss-Prot
Match: DAPB_ACAM1 (Dihydrodipicolinate reductase OS=Acaryochloris marina (strain MBIC 11017) GN=dapB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.801e-23
Identity = 61/165 (36.97%), Postives = 97/165 (58.79%), Query Frame = 2
Query:  110 VIINGAVKEIGRAAVIAVTKARGMEVAGAID------SHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR 586
            VI+ GA  ++GR  + AV +A  + +  A+D      S   GE +G+       L I + ++L  VL + +Q K   V++DFT  S+VY N++ A A+G+  V+    +  E ++ L+ F +KASMGCL+ P  SIG +LLQQAA+ AS ++ +VEI+E   N +
Sbjct:    9 VIVTGAAGKMGREVIKAVVQADDLRLYAAVDRNPDVFSLDAGELVGL-----DTLNIELTNELEPVLAAAAQEKQPCVMVDFTHPSSVYSNIRSAIAYGVFPVIGTTGLSDEQMNDLTEFTEKASMGCLVIPNFSIGMVLLQQAAVQASQYFDHVEIIELHHNQK 168          
BLAST of FC868680 vs. ExPASy Swiss-Prot
Match: DAPB_PROMP (Dihydrodipicolinate reductase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dapB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.308e-20
Identity = 64/202 (31.68%), Postives = 107/202 (52.97%), Query Frame = 2
Query:  110 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS----KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLISMQVCLRHIYLYPKFQNKHSFHTKRKLK 697
            V+++GA+  +G   V +V  +   E+  AID++    GE+I  + ++++  ++ V +DL   L SISQ     K + V++DFT   +VY+N + A A+G+  VV    +    ++ L+ F  KA++GC I P  S+G +LLQQAA  A+  Y N+E++E   N +    + T I     +     YPK  N+        LK
Sbjct:   11 VLVSGALGRMGSEVVNSVLNSSDCELVAAIDTNKKNNGENISQLLNLKKS-DVLVSNDLEGSLCSISQDYRNEKIKPVLVDFTHPDSVYENTRSAIAYGISPVVGTTGLTPSQINDLAIFAQKANIGCAIIPNFSVGMVLLQQAASVAAKFYDNIELIEMHHNQKADSPSGTCIKTAEMIEE---YPKKYNQSLVEESESLK 208          
BLAST of FC868680 vs. ExPASy Swiss-Prot
Match: DAPB_PROMM (Dihydrodipicolinate reductase OS=Prochlorococcus marinus (strain MIT 9313) GN=dapB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.888e-19
Identity = 63/189 (33.33%), Postives = 100/189 (52.91%), Query Frame = 2
Query:   83 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH------SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR------AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLI 613
            T+ P   I V++ GA+  +G   + AV  A   E+ GA+D+        +GE++G+       L++ + SD+   L S+SQS  R      AV++DFT  S VY++ + A A+G+  V+    +  + +  LS F  KASMG  + P  S+G +LLQQAA +A+  Y N E+ E   N +    + T I
Sbjct:    2 TSVPPELIPVVVVGALGRMGAEVIKAVHLASDCELVGAVDTTPGKEGVEIGEELGIGV-----LDVALTSDIEACLCSVSQSFHRTGPGQGAVLVDFTHPSVVYEHTRAAFAYGVHPVIGTTGLSHQQLVDLSEFAAKASMGGAVIPNFSVGMVLLQQAAAAAARFYDNAELTELHHNRKADAPSGTCI 185          
BLAST of FC868680 vs. ExPASy Swiss-Prot
Match: DAPB_SYNR3 (Dihydrodipicolinate reductase OS=Synechococcus sp. (strain RCC307) GN=dapB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.221e-19
Identity = 58/172 (33.72%), Postives = 93/172 (54.07%), Query Frame = 2
Query:  104 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLI 613
            I V++ GA+  +G   + AV  A   ++ GAID+     GED+G+   + + LE+ +  D    L   SQ    AV++DFT    VY++ + A A+G+  V+    +  E +  L++F  KASMG  + P  S+G +LLQQAA +A+  Y + E+VE   N +    + T I
Sbjct:    5 IPVVVAGALGRMGAEVIKAVHTAGDCQLVGAIDTCPGREGEDVGLALGLGE-LEVALTQDFEGALCLASQQHPGAVLVDFTHPKVVYEHTRAAIAYGVTPVIGTTGLAPEQLQELASFAAKASMGGAVIPNFSVGMVLLQQAAAAAARFYDHAELVELHHNRKADAPSGTCI 175          
BLAST of FC868680 vs. ExPASy Swiss-Prot
Match: DAPB_PROMA (Dihydrodipicolinate reductase OS=Prochlorococcus marinus GN=dapB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19
Identity = 59/185 (31.89%), Postives = 98/185 (52.97%), Query Frame = 2
Query:  104 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPVMSDLTMVL----GSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARVRYMTRTLISMQVCLRHI 640
            I V++ GA+ ++G   + A+ K+   E+  AID+ +   G DIG    M+Q +++ V +DL   L     S+  S   AV+IDFT  + VY++ + + A+G+  V+    + +  +  L  F +KAS+G  I P  S+G +LLQQAA +A+  Y   E+ ES  N +    + T I     +  I
Sbjct:    4 IPVLVAGALGKMGSEVIKAIYKSNDCELVAAIDNANEMEGVDIGTALGMDQ-MDVAVTADLEGSLCVASQSVRNSSGNAVLIDFTHPNVVYEHSRASIAYGVHPVIGTTGLSIVQLEELREFANKASIGAAIIPNFSVGMVLLQQAAAAAASFYDYAELTESHHNQKADAPSGTCIKTAEIIEEI 187          
The following BLAST results are available for this feature:
BLAST of FC868680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
DAPB_SYNP69.349e-2742.68Dihydrodipicolinate reductase OS=Synechococcus sp.... [more]
DAPB_SYNE79.349e-2742.68Dihydrodipicolinate reductase OS=Synechococcus elo... [more]
DAPB_THEEB7.914e-2640.59Dihydrodipicolinate reductase OS=Thermosynechococc... [more]
DAPB_SYNP23.007e-2538.51Dihydrodipicolinate reductase OS=Synechococcus sp.... [more]
DAPB_GLOVI6.700e-2537.27Dihydrodipicolinate reductase OS=Gloeobacter viola... [more]
DAPB_ACAM14.801e-2336.97Dihydrodipicolinate reductase OS=Acaryochloris mar... [more]
DAPB_PROMP1.308e-2031.68Dihydrodipicolinate reductase OS=Prochlorococcus m... [more]
DAPB_PROMM1.888e-1933.33Dihydrodipicolinate reductase OS=Prochlorococcus m... [more]
DAPB_SYNR33.221e-1933.72Dihydrodipicolinate reductase OS=Synechococcus sp.... [more]
DAPB_PROMA9.371e-1931.89Dihydrodipicolinate reductase OS=Prochlorococcus m... [more]

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Properties
Property NameValue
Genbank descriptionC31003D09EF AbioticL1 Citrus clementina cDNA clone C31003D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868680 ID=FC868680; Name=FC868680; organism=Citrus clementina; type=EST; length=745bp
GGCAACTTTGGGCTGCCAATTTCCCTGCAGAATGCATCACATTTCTCAAA
ATGTTAAAGCCAAGCGTTTCATTTCTTGCTCAACGAATCCCCCACAAAGT
AATATTAAGGTTATTATAAATGGAGCAGTGAAAGAAATAGGACGAGCAGC
AGTAATTGCCGTCACGAAAGCCAGAGGGATGGAGGTTGCTGGCGCCATCG
ATTCCCATTCTGTAGGAGAAGATATTGGAATGGTGTGTGATATGGAGCAG
CCTCTGGAAATTCCTGTAATGAGTGACCTCACAATGGTATTAGGTTCCAT
ATCTCAGTCAAAAGCAAGAGCAGTCGTCATTGATTTCACAGATGCTTCAA
CAGTTTATGACAATGTGAAACAGGCAACAGCGTTTGGAATGAGAAGCGTG
GTTTACGTGCCACACATTCAGCTGGAGACAGTTTCAGCATTATCTGCATT
CTGTGACAAGGCCAGCATGGGATGTCTTATTGCACCAACTCTCTCAATAG
GATCTATTCTTCTCCAGCAAGCCGCCATTTCTGCCTCCTTCCACTACAAG
AATGTGGAAATTGTAGAATCAAGGCCAAATGCAAGAGTAAGATATATGAC
TAGAACTTTAATTTCCATGCAGGTCTGTCTGAGGCACATTTACTTATATC
CAAAGTTCCAAAATAAACATAGTTTCCACACTAAGAGAAAACTAAAGATT
GCCAGTAGCATTATCGGCGTGGGTGAGATATTAATTTTAAGTAAA
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