FC868683

Overview
NameFC868683
Unique NameFC868683
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:1..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868683 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 9.185e-72
Identity = 123/216 (56.94%), Postives = 164/216 (75.93%), Query Frame = 3
Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVLISGFEGDNMIERSTNLDWYKGPTL 731
            M   K H+N+VVIGHVD GKST  GH++Y+LG +D++ I+  E+EA +  K SFK+AW+LDKLK ERERG+TI +   KFET +Y  T+IDAPGHRDF+KNMITG SQAD A+L++ +  G FEAG+S +GQTREHA+LA T+G+ Q+I   NKMDAT P +S+ RY++I   +  +LK +GY+  KVPF+ +S + GDN+IERS N+ WY GPTL
Sbjct:    1 MSSGKPHLNLVVIGHVDHGKSTLVGHILYRLGLVDQKTIQMLEEEAKKRGKESFKFAWLLDKLKEERERGVTIALTYMKFETRRYIFTIIDAPGHRDFVKNMITGASQADAALLVVSARKGEFEAGMSPEGQTREHAILAKTMGINQLIVAVNKMDATEPPWSQKRYEQIKTILGKFLKSLGYDISKVPFIPVSAWTGDNLIERSPNMPWYNGPTL 216          
BLAST of FC868683 vs. ExPASy Swiss-Prot
Match: EF1A_AERPE (Elongation factor 1-alpha OS=Aeropyrum pernix GN=tuf PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.953e-71
Identity = 120/213 (56.34%), Postives = 162/213 (76.06%), Query Frame = 3
Query:   93 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVLISGFEGDNMIERSTNLDWYKGPTL 731
            EK H+N+VVIGHVD GKST  GHL+Y+LG I+++ ++  E++A    K SFK+AW+LDK+K ERERGITID+   KFET KY  T+IDAPGHRDF+KNMITG SQAD A+L++ +  G FEAG+S +GQTREH LLA T+G++Q+I   NKMDA    Y + RY+ +V  +  ++K +GY  +K+PF+ +S ++GDN+IERS N+ WY GPTL
Sbjct:    3 EKPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKIPFIPVSAWKGDNLIERSPNMPWYNGPTL 215          
BLAST of FC868683 vs. ExPASy Swiss-Prot
Match: EF1A_GIALA (Elongation factor 1-alpha (Fragment) OS=Giardia lamblia GN=TEF1 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.501e-69
Identity = 129/197 (65.48%), Postives = 152/197 (77.16%), Query Frame = 3
Query:  144 STTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY-NPEKVPFVLISGFEGDNMIERSTNLDWYKGPTL 731
            ST TGHLIYK GGID+R I+ +EK A EM K SFKYAWVLD+LK ERERGITI+IALWKFET KY  T+IDAPGHRDFIKNMITGTSQAD A+L++ +  G FEAGISKDGQTREHA LA TLG+K MI C NKMD    KYSK RYDEI  E+   LK +G+   E+  ++  SG+ GDN++E+S  + WY+GP L
Sbjct:    1 STLTGHLIYKCGGIDQRTIDEYEKRATEMGKGSFKYAWVLDQLKDERERGITINIALWKFETKKYIVTIIDAPGHRDFIKNMITGTSQADVAILVVAAGQGEFEAGISKDGQTREHATLANTLGIKTMIICVNKMDDGQVKYSKERYDEIKGEMMKQLKNIGWKKAEEFDYIPTSGWTGDNIMEKSDKMPWYEGPCL 197          
BLAST of FC868683 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.241e-68
Identity = 126/161 (78.26%), Postives = 141/161 (87.58%), Query Frame = 3
Query:  240 SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVLISGFEGDNMIERSTNLDWYKG 722
            SFKYAWVLDKLKAERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P +S+ RY+EI KEVSSY+KK+GYNP  V FV ISG+ GDNM+E S+N+ W KG
Sbjct:    2 SFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPFSENRYEEIKKEVSSYIKKIGYNPVAVAFVPISGWHGDNMLEPSSNMRWLKG 162          
BLAST of FC868683 vs. ExPASy Swiss-Prot
Match: EF1A_THEPD (Elongation factor 1-alpha OS=Thermofilum pendens (strain Hrk 5) GN=tuf PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.678e-65
Identity = 118/217 (54.38%), Postives = 161/217 (74.19%), Query Frame = 3
Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVLISGFEGDNMIERS-TNLDWYKGPTL 731
            M ++K H+N+VVIGH+D GKST  G L+Y++G +D R+I+++E+EA +M + ++KYAWVLDKLK ERE+GITID+  +KFET KY+ T+IDAPGHRDF+KNMITG SQAD A+L++ +  G FEAGIS  GQTREH  LA T+GV Q++   NKMD  T  YSK RY+EI  ++   L+ VGY  +++PF+  S +EG N+ +R+     WY GP L
Sbjct:    1 MSEKKPHLNLVVIGHIDHGKSTLMGRLLYEIGAVDPRLIQQYEEEAKKMGRETWKYAWVLDKLKEEREKGITIDLGFYKFETKKYFFTLIDAPGHRDFVKNMITGASQADVALLVVSAKEGEFEAGISPAGQTREHVFLAKTMGVDQLVVAINKMD--TVNYSKERYEEIKNQLIRLLRMVGYKVDEIPFIPTSAWEGVNVSKRTPEKTPWYDGPCL 215          
BLAST of FC868683 vs. ExPASy Swiss-Prot
Match: EF1A_THEAC (Elongation factor 1-alpha OS=Thermoplasma acidophilum GN=tuf PE=3 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 2.051e-63
Identity = 117/216 (54.17%), Postives = 156/216 (72.22%), Query Frame = 3
Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVLISGFEGDNMIERSTNLDWYKGPTL 731
            M  +K H+N++ IGHVD GKST  G L+Y+ G I   +IE + KEA +  K +F++AWV+D+ K ERERG+TID+A  KFET KYY T+IDAPGHRDF+KNMITGTSQAD A+L+I +  G    G+ +  QTREHA LA TLGV QM+   NKMDAT+P YS+ RY+E+  +    L+ +G+  + + FV ISG++GDN+ + S N+ WYKGPTL
Sbjct:    1 MASQKPHLNLITIGHVDHGKSTLVGRLLYEHGEIPAHIIEEYRKEAEQKGKATFEFAWVMDRFKEERERGVTIDLAHRKFETDKYYFTLIDAPGHRDFVKNMITGTSQADAAILVISAREG---EGVME--QTREHAFLARTLGVPQMVVAINKMDATSPPYSEKRYNEVKADAEKLLRSIGF--KDISFVPISGYKGDNVTKPSPNMPWYKGPTL 209          
BLAST of FC868683 vs. ExPASy Swiss-Prot
Match: EF1A_SULSO (Elongation factor 1-alpha OS=Sulfolobus solfataricus GN=tuf PE=1 SV=3)

HSP 1 Score: 241.506 bits (615), Expect = 3.498e-63
Identity = 110/213 (51.64%), Postives = 154/213 (72.30%), Query Frame = 3
Query:   93 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVLISGFEGDNMIERSTNLDWYKGPTL 731
            +K H+N++VIGH+D GKST  G L+   G ID++ ++  E+ A ++ K S K+A++LD+LK ERERG+TI++   +FET KY+ T+IDAPGHRDF+KNMITG SQAD A+L++ +  G +EAG+S +GQTREH +LA T+G+ Q+I   NKMD T P Y + RY EIV +VS +++  G+N  KV FV +    GDN+  RS N+ WY GPTL
Sbjct:    3 QKPHLNLIVIGHIDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPAGDNITHRSENMKWYNGPTL 215          
BLAST of FC868683 vs. ExPASy Swiss-Prot
Match: EF1A_CENSY (Elongation factor 1-alpha OS=Cenarchaeum symbiosum GN=tuf PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.498e-63
Identity = 116/220 (52.73%), Postives = 158/220 (71.82%), Query Frame = 3
Query:   75 LTAMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKR-SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVLISGFEGDNMIERSTNLDWYKGPTL 731
            +TA   +K H+N++V GH+D+GKSTT GH +  LG +D+R I +  +E+ +  K  +FKYAWV+D +K ERERGITID+A  KFET KY+ T+IDAPGHRDFIKNMITG S+ADCA+L++ +  G  +  I+  GQ REHA L  TLGV Q+I   NKMD +  KYS+  Y + V++    +K VGY  E VPF+ +SG++GDN+++RS N+ WYKG TL
Sbjct:    1 MTAHMADKPHLNMIVTGHIDNGKSTTMGHFLMDLGVVDERTIAQHAEESEKTGKGDTFKYAWVMDNIKDERERGITIDLAFQKFETPKYFFTLIDAPGHRDFIKNMITGASEADCAILVLSAKEGETDTAIAAGGQAREHAFLLKTLGVNQLIVAVNKMDDS--KYSEEAYKKTVEKGEGLVKSVGYKLENVPFIPVSGWKGDNLVKRSENMPWYKGKTL 218          
BLAST of FC868683 vs. ExPASy Swiss-Prot
Match: EF1A_METTP (Elongation factor 1-alpha OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=tuf PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.967e-63
Identity = 112/216 (51.85%), Postives = 150/216 (69.44%), Query Frame = 3
Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVLISGFEGDNMIERSTNLDWYKGPTL 731
            M   K H+N+  IGHVD GKST  G ++Y++G ID+ +IE++ KEAA   K +F++AWV+D LK ERERG+TIDIA  +F+T KYY TV+D PGHRDF+KNMITG SQAD AVL++ +  G          QT+EH  LA TLGV Q+I   NKMDAT P Y + RY+E+ +EV   L+ VGY  ++VPF+ +S + GDN+++ S    WY GPT+
Sbjct:    1 MADTKPHLNLAFIGHVDHGKSTLVGRMMYEMGAIDEHIIEQYRKEAAAKGKATFEFAWVMDSLKEERERGVTIDIAHQRFDTDKYYFTVVDCPGHRDFVKNMITGASQADAAVLVVAAPDGVM-------AQTKEHVFLARTLGVNQLIVAINKMDATEPPYDEKRYNEVKEEVGKLLRMVGYKIDEVPFIPVSAYNGDNVVKHSDRTKWYTGPTV 209          
BLAST of FC868683 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.794e-63
Identity = 115/216 (53.24%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVLISGFEGDNMIERSTNLDWYKGPTL 731
            M  EK H+N+V+IGHVD GKST  G L+++ G I + +I+ ++KEA E  K +F++AWV+D+ K ERERG+TID+   KFET KYY T+IDAPGHRDF+KNMITGTSQAD AVL++ +  G    G+    QT+EHA LA TLGV Q+I   NKMDAT P YS+ R++E+  E++  L  +G+  + VP + +SG++GDN+++ S NL W+KGPTL
Sbjct:    1 MASEKPHMNLVIIGHVDHGKSTLVGRLLFEHGEIPQHIIDEYKKEAEEKGKATFEFAWVMDRFKEERERGVTIDLTHRKFETDKYYFTIIDAPGHRDFVKNMITGTSQADAAVLVVSAREG---EGVM--AQTKEHAFLARTLGVPQLIAVVNKMDATQPPYSEKRFNEVKDEITKLLTPIGF--KNVPIIPLSGYKGDNIMKPSPNLSWWKGPTL 209          
The following BLAST results are available for this feature:
BLAST of FC868683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_STAMF9.185e-7256.94Elongation factor 1-alpha OS=Staphylothermus marin... [more]
EF1A_AERPE5.953e-7156.34Elongation factor 1-alpha OS=Aeropyrum pernix GN=t... [more]
EF1A_GIALA2.501e-6965.48Elongation factor 1-alpha (Fragment) OS=Giardia la... [more]
EF1A_RHYAM1.241e-6878.26Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]
EF1A_THEPD1.678e-6554.38Elongation factor 1-alpha OS=Thermofilum pendens (... [more]
EF1A_THEAC2.051e-6354.17Elongation factor 1-alpha OS=Thermoplasma acidophi... [more]
EF1A_SULSO3.498e-6351.64Elongation factor 1-alpha OS=Sulfolobus solfataric... [more]
EF1A_CENSY3.498e-6352.73Elongation factor 1-alpha OS=Cenarchaeum symbiosum... [more]
EF1A_METTP5.967e-6351.85Elongation factor 1-alpha OS=Methanosaeta thermoph... [more]
EF1A_PICTO7.794e-6353.24Elongation factor 1-alpha OS=Picrophilus torridus ... [more]

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Properties
Property NameValue
Genbank descriptionC31003D12EF AbioticL1 Citrus clementina cDNA clone C31003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868683 ID=FC868683; Name=FC868683; organism=Citrus clementina; type=EST; length=732bp
GACTCTTTGCCCTCCCTCTTTTCTCGCTTGCTCTGCGGCTAGGTTTCAAT
TGTCTCTTCGAAGTTTCAGTTAATTTAACAGCCATGGGTAAGGAGAAGAC
TCACATCAACATTGTGGTGATTGGCCATGTCGACTCTGGAAAGTCGACCA
CCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATC
GAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCA
TTCGTGCTCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTAC
CAACCTTGACTGGTACAAGGGTCCAACCCTGC
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