FC868683

Overview
NameFC868683
Unique NameFC868683
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868683 vs. ExPASy Swiss-Prot
Match: EFTU_CYAP4 (Elongation factor Tu OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=tuf PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.313e-21
Identity = 59/193 (30.57%), Postives = 98/193 (50.78%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVLISG 668
            + K H+NI  IGHVD GK+T T  +   L  + +    ++++               +D    E+ RGITI+ A  ++ETT+ +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D       +   + +  E+   L    ++ + +P +  SG
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTAAITMTLAALGQAAARKYDE---------------IDAAPEEKARGITINTAHVEYETTQRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGAMP-------QTKEHILLAKQVGVPSIVVFLNKVDQLD---DEELLELVELELRELLTSYDFDGDNIPIIRGSG 175          
BLAST of FC868683 vs. ExPASy Swiss-Prot
Match: EFTU_CYAME (Elongation factor Tu, chloroplastic OS=Cyanidioschyzon merolae GN=tufA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.313e-21
Identity = 65/194 (33.51%), Postives = 96/194 (49.48%), Query Frame = 3
Query:   78 TAMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRV-IERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 656
            T   + K H+NI  IGHVD GK+T T  +   L   D  V +++FE+               +D    ER RGITI+ +  +++T K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  EV   L K  +  + +PFV
Sbjct:    4 TKFERTKPHVNIGTIGHVDHGKTTLTAAISAVLASKDNTVQLKKFEE---------------IDSAPEERARGITINTSHVEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPSIVVFLNKADMVD---DPELLELVELEVRELLSKYDFPGDTIPFV 172          
BLAST of FC868683 vs. ExPASy Swiss-Prot
Match: EFTU_CYACA (Elongation factor Tu, chloroplastic OS=Cyanidium caldarium GN=tufA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.313e-21
Identity = 65/190 (34.21%), Postives = 97/190 (51.05%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRV-IERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 656
            + K HINI  IGHVD GK+T T  +   L  ID  V +++F++               +D    E+ RGITI+ +  +++T   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L K  +  E+VPFV
Sbjct:    8 RSKPHINIGTIGHVDHGKTTLTAAISAVLASIDNTVKLKKFDE---------------IDAAPEEKARGITINTSHVEYQTPLRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPSIVVFLNKADMID---DEELLELVELEVRELLSKYDFPGEEVPFV 172          
BLAST of FC868683 vs. ExPASy Swiss-Prot
Match: EFTU_CHLCH (Elongation factor Tu OS=Chlorobium chlorochromatii (strain CaD3) GN=tuf PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.313e-21
Identity = 67/200 (33.50%), Postives = 99/200 (49.50%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---LISGFEGD 680
            ++K H+NI  IGHVD GK+T T  +   L             +     +R F     +DK   ERERGITI  A  +++T K +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  ++   NK+D   P+      + +  E+   L +  +  + +P +    +   EGD
Sbjct:    8 RDKPHVNIGTIGHVDHGKTTLTAAITLVLS------------KQGLAQERDFGS---IDKAPEERERGITISTAHVEYQTDKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVNVPSLVVFLNKVDIADPEL----IELVELELRELLSQYDFPGDDIPIIKGSALKAMEGD 181          
BLAST of FC868683 vs. ExPASy Swiss-Prot
Match: EFTU_ANASP (Elongation factor Tu OS=Anabaena sp. (strain PCC 7120) GN=tuf PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.313e-21
Identity = 64/196 (32.65%), Postives = 101/196 (51.53%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVLISGFE 674
            + K H+NI  IGHVD GK+T T  +   L  + + V + +++               +D    E+ RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV +++   NK D        A   E+V+ E+   L +  ++ + +P V  SG +
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITMTLAALGQAVAKGYDQ---------------IDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLAKQVGVPKLVVFLNKED----MMEDAELLELVELELRELLTEYEFDGDDIPIVRGSGLQ 177          
BLAST of FC868683 vs. ExPASy Swiss-Prot
Match: EFTU2_THET8 (Elongation factor Tu-B OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tufB PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.313e-21
Identity = 66/189 (34.92%), Postives = 94/189 (49.74%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 656
            + K H+N+  IGHVD GK+T T  L +                AAE      K    +DK   ER RGITI+ A  ++ET K + + +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D           D +  EV   L +  +  ++VP +
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAALTFVT--------------AAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFMNKVDMVD---DPELLDLVEMEVRDLLNQYEFPGDEVPVI 172          
BLAST of FC868683 vs. ExPASy Swiss-Prot
Match: EFTM_ARATH (Elongation factor Tu, mitochondrial OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.313e-21
Identity = 63/204 (30.88%), Postives = 101/204 (49.51%), Query Frame = 3
Query:   72 NLTAMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVLISGFEGDN 683
            ++    + K H+N+  IGHVD GK+T T         I K + E  + +A   ++        +DK   E++RGITI  A  ++ET K +   +D PGH D++KNMITG +Q D  +L++    G          QT+EH LLA  +GV  ++C  NK+D           +  ++E+ S+ K  G +   +    +S  +G N
Sbjct:   57 SMATFTRNKPHVNVGTIGHVDHGKTTLTA-------AITKVLAEEGKAKAIAFDE--------IDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGPMP-------QTKEHILLARQVGVPSLVCFLNKVDVVDDPELLELVEMELRELLSFYKFPGDDIPIIRGSALSALQGTN 238          
BLAST of FC868683 vs. ExPASy Swiss-Prot
Match: EFTU_THEFY (Elongation factor Tu OS=Thermobifida fusca (strain YX) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.326e-21
Identity = 66/200 (33.00%), Postives = 102/200 (51.00%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVLIS---GFEGD 680
            + K H+NI  IGH+D GK+T T         I K + +++       +   F     +DK   ERERGITI I+  +++T   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D       +  +D +  EV   L +  +  ++VP + +S     EGD
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTA-------AITKVLHDKYP------DLNPFTPFEDIDKAPEERERGITISISHVEYQTESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKSDMVD---DEEIFDLVELEVRELLNEYEFPGDEVPVIRVSALKALEGD 184          
BLAST of FC868683 vs. ExPASy Swiss-Prot
Match: EFTU_SYNFM (Elongation factor Tu OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.326e-21
Identity = 65/190 (34.21%), Postives = 98/190 (51.58%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV 656
            + K H+N+  +GH+D GK+T T         I K++ +R   E    ++        +DK   ERERGITI  A  ++ET K +   +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LL+  +GV  ++   NK+D            E+V+ E+   L K G+  + VP +
Sbjct:    8 RTKPHVNVGTVGHIDHGKTTLTA-------AITKQLAKRGRAEFVPFDQ--------IDKAPEERERGITIATAHVEYETDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAADDGPMP-------QTREHILLSRQVGVPYIVVFLNKVDMV----DDPELIELVELELRELLSKYGFPGDDVPII 171          
BLAST of FC868683 vs. ExPASy Swiss-Prot
Match: EFTU_SULMW (Elongation factor Tu OS=Sulcia muelleri (strain GWSS) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.326e-21
Identity = 63/190 (33.16%), Postives = 96/190 (50.53%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV 656
            ++K H+NI  IGHVD GK+T T  +   L      V + F                 +D    E+ERGITI+ +  +++T   +   +D PGH D++KNM+TG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK+D    K       E+V+ E+   L K  Y+ E +P +
Sbjct:    8 RDKPHLNIGTIGHVDHGKTTLTASITKVLAKKGLAVAKEFSS---------------IDNAPEEKERGITINTSHVEYQTEIRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVPNLVVFMNKVDQVDDK----EILELVEIEIRELLSKYEYDGENIPII 171          
The following BLAST results are available for this feature:
BLAST of FC868683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CYAP43.313e-2130.57Elongation factor Tu OS=Cyanothece sp. (strain PCC... [more]
EFTU_CYAME3.313e-2133.51Elongation factor Tu, chloroplastic OS=Cyanidiosch... [more]
EFTU_CYACA3.313e-2134.21Elongation factor Tu, chloroplastic OS=Cyanidium c... [more]
EFTU_CHLCH3.313e-2133.50Elongation factor Tu OS=Chlorobium chlorochromatii... [more]
EFTU_ANASP3.313e-2132.65Elongation factor Tu OS=Anabaena sp. (strain PCC 7... [more]
EFTU2_THET83.313e-2134.92Elongation factor Tu-B OS=Thermus thermophilus (st... [more]
EFTM_ARATH3.313e-2130.88Elongation factor Tu, mitochondrial OS=Arabidopsis... [more]
EFTU_THEFY4.326e-2133.00Elongation factor Tu OS=Thermobifida fusca (strain... [more]
EFTU_SYNFM4.326e-2134.21Elongation factor Tu OS=Syntrophobacter fumaroxida... [more]
EFTU_SULMW4.326e-2133.16Elongation factor Tu OS=Sulcia muelleri (strain GW... [more]

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Properties
Property NameValue
Genbank descriptionC31003D12EF AbioticL1 Citrus clementina cDNA clone C31003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868683 ID=FC868683; Name=FC868683; organism=Citrus clementina; type=EST; length=732bp
GACTCTTTGCCCTCCCTCTTTTCTCGCTTGCTCTGCGGCTAGGTTTCAAT
TGTCTCTTCGAAGTTTCAGTTAATTTAACAGCCATGGGTAAGGAGAAGAC
TCACATCAACATTGTGGTGATTGGCCATGTCGACTCTGGAAAGTCGACCA
CCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATC
GAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCA
TTCGTGCTCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTAC
CAACCTTGACTGGTACAAGGGTCCAACCCTGC
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