FC868685

Overview
NameFC868685
Unique NameFC868685
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPA (Glycogen synthase OS=Rhodopseudomonas palustris GN=glgA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.140e-39
Identity = 90/211 (42.65%), Postives = 124/211 (58.77%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            I ++KAG+  +D + TVSP YA E + G + G+ LD ++R     + GI+NG+D   WNP +D  I   YD  ++  A+   K+ LQA  GL  +    + G I RL  QKG D+L  A+P  I    Q+ +LG+G   +E+        YP +   V  ++  LAH I AGAD +L+PSRFEPCGL QL A+RYG VP+VA  GGL DTV
Sbjct:  200 IGYLKAGLQLADRITTVSPTYAAE-IQGSEAGMGLDGLLRLRADRLSGILNGIDTDVWNPASDALISATYDVESIA-ARARNKKVLQARFGLKPEPGALLYGVISRLSWQKGLDLLLEALPQLIGGGAQLALLGSGDAELEQGYAAAARKYPGQVGAVIGYDEALAHQIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTV 408          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_HAEPS (Glycogen synthase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=glgA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.140e-39
Identity = 89/215 (41.40%), Postives = 128/215 (59.53%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQEL---VSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 651
            +I+++KAG+  +D V  VSP YA+E+   ++G      L   + +  ++GI+NG+D   WNP TD  I   Y  +  M  K   K  LQ   GLP D++  +   + RL EQKG+D L A I   ++ NVQ++VLG+G   +E  L   +  YP K      ++  L+H IIAG D IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +
Sbjct:  194 EISYLKAGLFYADRVTAVSPTYAREITEQIAGAGMHGLLQQRLAEGALRGILNGVDDTVWNPETDTNIVANYRPN-YMQGKGKNKSELQRYFGLPEDKDALLFVMVTRLTEQKGADFLLARIDQIMQHNVQLVVLGSGSPDLEWALRDAQSRYPHKIGLKIGYDEALSHQIIAGGDVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVND 407          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_GEOTN (Glycogen synthase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=glgA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.140e-39
Identity = 87/212 (41.04%), Postives = 129/212 (60.85%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE 648
            +++MK  ++ SD++ TVSP Y +E+ +    G  LD ++R  +  + GI+NG+D + +NP  D ++   Y   T  + K L K ALQ + GLP   ++P+I  + R+  QKG D++       + E++Q++VLGTG    E+   Q+   YP K      F+ PLAH I AGAD  L+PS FEPCGL Q+ A+RYGT+PIV  TGGL DTV+
Sbjct:  198 VSFMKGALVASDLITTVSPTYKEEIQTAY-YGERLDGLLRARRDDLLGILNGIDDEFYNPEADPFLTATYSVHT-RERKQLNKRALQRQFGLPEWDDVPLIAMVTRMTAQKGLDLVTCVFHEMMSEDMQLVVLGTGDWRFEQFFSQMAAAYPGKVGVYIGFHEPLAHQIYAGADLFLMPSLFEPCGLSQMIALRYGTIPIVRETGGLNDTVQ 407          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_LACLA (Glycogen synthase OS=Lactococcus lactis subsp. lactis GN=glgA PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.945e-39
Identity = 90/211 (42.65%), Postives = 128/211 (60.66%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            +N +K GIL +D V TVSP YA+E+ + E  G  L++I++     + GI+NG+D   +NP  D  I   +     +  K  +K  LQ   GLP++ N+P+IG + RL  QKG D++ + +   ++ENVQI++LGTG   +E+        YP+K      F+I  A  I AG+DF L+PS FEPCGL Q+ AMRYGT+PIV   GGL DTV
Sbjct:  201 LNMLKTGILYADRVNTVSPTYAKEIQTSEF-GCGLESILQYVDGKVSGILNGIDYDIYNPENDILIPYHFSEEE-LSGKGQMKAELQKRTGLPLNPNVPLIGMVSRLTNQKGFDLVLSQLEKVLEENVQIVLLGTGFPEIEEGFRYFSQKYPDKLSANIAFDIQFAQEIYAGSDFFLMPSAFEPCGLSQMIAMRYGTLPIVHEIGGLKDTV 409          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_GEOSF (Glycogen synthase OS=Geobacter sp. (strain FRC-32) GN=glgA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.945e-39
Identity = 86/212 (40.57%), Postives = 129/212 (60.85%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            K+N +K  IL +D++ TVS  Y +E+++ E  G  LD ++  RK  + G++NG+D + WNP TD+ I   +        K   K+ALQ  +GL +  +IP++G + RL EQKG D+L A +P   K  +Q+++LGTG +   K L++   L  +       F+  LA  I AG+D  L+PSR+EPCGL Q+ A+RYG VP+V  TGGL DT+
Sbjct:  201 KVNLIKGAILTADVINTVSETYCREILTPES-GDGLDGVLTLRKNDLYGVLNGIDYEHWNPATDRGISKNFTPGAPA-GKAANKKALQKRLGLEIAEDIPLVGMVSRLTEQKGLDLLEALLPRIAKAKLQLVLLGTGDEKYLKLLQEFAALGTDNVSVNIGFHPELAPQIYAGSDIFLMPSRYEPCGLGQMIALRYGAVPVVRKTGGLADTI 410          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_DESAP (Glycogen synthase OS=Desulforudis audaxviator (strain MP104C) GN=glgA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.945e-39
Identity = 90/213 (42.25%), Postives = 136/213 (63.85%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 651
            +++MKAGI  +D++ TVS  YA+E+ + E  G  ++ ++R+    + GIVNG++  E++P TD  +   YD     + K   K  LQ E+ LPV R++PV+G I RL +QKG D++A  I   ++ ++Q+++LG G K  E    ++++ +P K      FN+ LA  I AG+D  L+PSRFEPCGL QL ++RYGT+PIV  TGGL DTV E
Sbjct:  211 VSFMKAGIQYADVLTTVSRTYAREIQTPE-YGQRMEGVLRQRAHELYGIVNGINYHEFDPKTDPRLHRNYDVDH-WEHKKENKFTLQREMNLPV-RDVPVLGLITRLVDQKGLDLIAEIIDELMRLDIQMVILGKGDKYYEDMFREMKVQHPGKIAAHIGFNVVLAQRIYAGSDMFLMPSRFEPCGLGQLISLRYGTIPIVRETGGLADTVNE 420          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_CLOD6 (Glycogen synthase OS=Clostridium difficile (strain 630) GN=glgA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.945e-39
Identity = 95/219 (43.38%), Postives = 134/219 (61.19%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTG 663
            IN+MKAGI  +D ++TVSP YA E+ +    G +LD ++RK    +KGI+NG+D    +P  DK I V YD  ++ + K   K  LQ  +GL  D +IP+IG + RL  QKG D++A  +P  ++E++QI+VLGTG+   +      +  + +K      FN  LA  I A +D  L+PS FEPCG+ Q+ AMRYG++PIV  TGGL DTV     FTG
Sbjct:  202 INFMKAGINFADKIITVSPTYANEIQTSF-YGEQLDGLLRKESGKLKGILNGIDYDLNDPAKDKDIFVHYDVDSI-NKKVENKLRLQDILGLKKDSSIPLIGIVSRLVSQKGFDLIAYMMPELMREDLQIVVLGTGEHQYQSMFNYYDSNFSDKVSARITFNASLAQQIYAASDMFLMPSLFEPCGIGQMLAMRYGSLPIVRETGGLRDTVTPYNKFTG 418          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_CLOBA (Glycogen synthase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=glgA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.945e-39
Identity = 93/233 (39.91%), Postives = 137/233 (58.80%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE-------EGFTGFQMGSFSVD 690
            + +MK  I  SDM+ TVS  YA+E+ + E  G  LD ++R+    ++GI+NG+D  E+NP  D  I   YD + + D K   K  LQ+E+GL V+ NIP+I  + RL  QKG D+L       ++ ++Q++++GTG K  E   + L+  Y  K     +F+  LAH + A +D  L+PS FEPCGL QL A+RYG++PIV  TGGL DT+        EG  GF   +++ D
Sbjct:  199 VGFMKGAINYSDMITTVSYSYAEEIKTPEF-GERLDWLLREKSYMLRGILNGIDYDEFNPKNDNLINKNYDVNNIND-KYENKRNLQSELGLNVNENIPIIAMVTRLTSQKGLDLLVNISERLLQNDIQLVIVGTGDKHYEDHFKWLDYKYGNKVSANIRFDNNLAHKVYAASDMFLMPSLFEPCGLGQLIALRYGSIPIVRETGGLKDTIRAYNEYTGEG-NGFSFYNYNAD 428          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_BACLD (Glycogen synthase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=glgA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.945e-39
Identity = 89/212 (41.98%), Postives = 131/212 (61.79%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPH-FIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            IN+MK GI+ +D V TVSP Y  E+++    G  L+ ++  +K  + GI+NG+D   ++PL D +I   YDA    D K   K  +Q   GLPV+ +IP+I  + RL +QKG D++   +   F +E++Q+IVLGTG+   E     +E  +P++ +    F+ PL+  I A +D  L+PS+FEPCGL QL A+RYG VP+V  TGGL DTV
Sbjct:  198 INYMKGGIIAADQVTTVSPTYRDEILTPY-YGERLEGVLSDKKDALTGILNGIDDVLYDPLNDPHIDYHYDAVN-RDGKRKNKAVIQKTFGLPVNEDIPLISMVARLTKQKGFDLIKRVLHELFEEEDMQLIVLGTGEAEFENYFRYMEHAFPDRCKAYIGFHEPLSRKIYAASDLFLMPSKFEPCGLGQLIALRYGAVPVVRETGGLHDTV 407          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_RHORT (Glycogen synthase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glgA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.541e-39
Identity = 87/212 (41.04%), Postives = 124/212 (58.49%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQEL---VSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            ++ +KAGI+ +  V TVSP YA E+   V G+  G+E     R   + GI+NG+D   WNP TD Y+    D +     K + K+ L+  +GL  D + P+ G + R   QKG D++ AA+P  I    Q+ +LG G   +E  L  +   YP  A     ++  LAH+I   ADF+L+PSRFEPCGL QL+A+RYGT+P+V  TGGL D+V
Sbjct:  201 VSTLKAGIVYAQAVATVSPSYAAEIKTPVGGQ--GLEGLLQARAGDLSGILNGIDSNAWNPQTDPYLAAPIDGADPAPGKRINKDMLKRRMGLDADGDRPLFGLVSRFVAQKGIDLVVAALPGMIAGGAQVAILGAGDTGLEAALNDIVGRYPGAAAVHVGYDEHLAHLIEGAADFLLVPSRFEPCGLTQLYALRYGTIPVVRRTGGLADSV 410          
The following BLAST results are available for this feature:
BLAST of FC868685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_RHOPA1.140e-3942.65Glycogen synthase OS=Rhodopseudomonas palustris GN... [more]
GLGA_HAEPS1.140e-3941.40Glycogen synthase OS=Haemophilus parasuis serovar ... [more]
GLGA_GEOTN1.140e-3941.04Glycogen synthase OS=Geobacillus thermodenitrifica... [more]
GLGA_LACLA1.945e-3942.65Glycogen synthase OS=Lactococcus lactis subsp. lac... [more]
GLGA_GEOSF1.945e-3940.57Glycogen synthase OS=Geobacter sp. (strain FRC-32)... [more]
GLGA_DESAP1.945e-3942.25Glycogen synthase OS=Desulforudis audaxviator (str... [more]
GLGA_CLOD61.945e-3943.38Glycogen synthase OS=Clostridium difficile (strain... [more]
GLGA_CLOBA1.945e-3939.91Glycogen synthase OS=Clostridium botulinum (strain... [more]
GLGA_BACLD1.945e-3941.98Glycogen synthase OS=Bacillus licheniformis (strai... [more]
GLGA_RHORT2.541e-3941.04Glycogen synthase OS=Rhodospirillum rubrum (strain... [more]

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Properties
Property NameValue
Genbank descriptionC31003E03EF AbioticL1 Citrus clementina cDNA clone C31003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868685 ID=FC868685; Name=FC868685; organism=Citrus clementina; type=EST; length=704bp
ACCTGTGAGAGGTTCAAAATCAACTGGATGAAAGCTGGAATATTAGAATC
AGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTG
GTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATT
AAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGA
CAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGC
CTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGA
AATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTC
AGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGA
TAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAG
TTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATAT
TCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAA
GCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGA
ACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGA
AGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTG
TGGA
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