FC868685

Overview
NameFC868685
Unique NameFC868685
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_RHOCS (Glycogen synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=glgA PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.791e-38
Identity = 86/214 (40.19%), Postives = 129/214 (60.28%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 651
            KI  +KAG+  +D + TVSP YAQE + G   G  LD ++R     + GI+NG+D+  WNP +D  I  +YDA T+++A+   K  L+   GL    + P+   + RL  QKG D++  A+P  +    Q+ +LGTG K +E+        +P +   V  ++  L+H I AGAD +L+PSRFEPCGL Q++A+RYG +P+V+  GGL DTV +
Sbjct:  216 KIGLLKAGLYYADKLTTVSPTYAQE-IQGPAMGFGLDGLLRARARDLSGILNGVDLGLWNPASDPLIPARYDA-TLLEARQAAKAELRHAFGLGSVPDGPLFAVVSRLTHQKGIDLVLEALPRLLALGGQLAILGTGDKVLEQAAAAAMHDHPGRVGLVRAYDEALSHRIQAGADVLLVPSRFEPCGLTQMYALRYGALPLVSRVGGLADTVTD 427          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_NITEU (Glycogen synthase OS=Nitrosomonas europaea GN=glgA PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.791e-38
Identity = 92/213 (43.19%), Postives = 127/213 (59.62%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 651
            ++++KAGI  +  + TVSP YA+E +  E  G  L  ++  R   I GI+NG+D   WNP TD +I  KY +S  + AK + K ALQ E+GL  +  IP+   I RL  QKG DIL    P       Q+++LG G + +EKQL  L    P +      ++  L+H I A AD  L+PSRFEPCGL Q+++ RYGT PIV +TGGL+DTV +
Sbjct:  213 LSFLKAGIYYATRITTVSPTYARE-IQHEPLGFGLQGLLAERSNAITGIINGIDNTVWNPATDPHIVKKY-SSRNLAAKKINKLALQREMGLEENETIPLFAGISRLSYQKGYDILLQVAPMLADLPAQLVLLGKGDQSLEKQLVMLAQTNPARIAVRIDYDEALSHRINASADCFLMPSRFEPCGLNQMYSQRYGTPPIVHTTGGLIDTVTD 423          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_GLOVI (Glycogen synthase OS=Gloeobacter violaceus GN=glgA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.173e-38
Identity = 88/211 (41.71%), Postives = 130/211 (61.61%), Query Frame = 1
Query:   22 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKEN-VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            N M AGI+ SD +  VSP YA+E+ + E  G  LD ++R  G  + GI+NG++ +  +P TDK++ V YD +T +D +   K ALQ E G  V  +  ++G + RL +QKG D+LA    +++  +  Q++VLG+G    E         YP++ + V  +N+P+A  I  GAD  L+PSRFEPCG+ Q+ A+RYG VP+V  TGGL DTV
Sbjct:  177 NPMVAGIIHSDAITAVSPTYAREICTPE-YGERLDGLLRGQGNRLTGILNGINTKALDPATDKHLTVNYD-TTSLDRRVENKLALQREFGFEVSADRLLVGIVSRLVDQKGFDLLAPLWDNWMHTSGAQLVVLGSGDPFYEFLFRSAAERYPDRIKAVLSYNVPIAQRIYGGADLFLMPSRFEPCGIGQMIALRYGAVPLVRKTGGLADTV 385          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_SYNE7 (Glycogen synthase OS=Synechococcus elongatus (strain PCC 7942) GN=glgA PE=3 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 1.067e-37
Identity = 92/209 (44.02%), Postives = 130/209 (62.20%), Query Frame = 1
Query:   28 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            M A +L +D V TVSP YAQ++ +    G +L+ ++      + GI+NG+DV  +NP TD  I   YD  T +D +   K ALQ E+GL V+ +  +IGF+ RL EQKG D+L   +  F+   + Q +VLGTG++  E QL +L   YP +      ++  L+  I AG+D  L+PSRFEPCG+ Q+ A+RYG+VPIV  TGGLVDTV
Sbjct:  180 MAAALLYADRVNTVSPTYAQQIQT-PTYGEKLEGLLSFISGKLSGILNGIDVDSYNPATDTRIVANYDRDT-LDKRLNNKLALQKEMGLEVNPDRFLIGFVARLVEQKGIDLLLQILDRFLSYSDAQFVVLGTGERYYETQLWELATRYPGRMSTYLMYDEGLSRRIYAGSDAFLVPSRFEPCGITQMLALRYGSVPIVRRTGGLVDTV 386          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_PROM4 (Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=glgA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.067e-37
Identity = 89/220 (40.45%), Postives = 133/220 (60.45%), Query Frame = 1
Query:   28 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS 678
            M   +L +D V  VSP YA+E+ + E  G +LD ++      ++GI+NG+D+ +WNP TDK +   + AS ++  +   K ALQ+++GL V  N  ++G +GRL +QKG D+L       +   + QI+VLGTG+  +E  L QL   YP +      ++  L+ +I AG D  L+PSRFEPCG+ QL AMRYG++P+V + GGLVDTV       Q G+
Sbjct:  180 MAVAMLYADRVNAVSPTYAKEICTSE-YGEKLDGLLNYISGKLRGILNGIDLDDWNPETDKALPANFSASNILGRRKN-KAALQSQMGLDVKPNSYLLGMVGRLVDQKGVDLLLQVARRLLAYTDSQIVVLGTGESALESALWQLATEYPGRFAVFLTYDDYLSRLIYAGTDAFLMPSRFEPCGISQLLAMRYGSIPVVRNVGGLVDTVSPHDPSKQTGT 397          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_GRABC (Glycogen synthase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=glgA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.067e-37
Identity = 84/217 (38.71%), Postives = 134/217 (61.75%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFT 660
            +I  +KAG+  +D + TVSP YA+E+ + +  G+ L  ++R     + G++NG+D+ EWNP  D ++   +D  + ++ + + +EAL+   GL      P+ G + RL  QKG D++  A+P  I +  Q++VLG+G K +E+ L Q    +P +    + ++  L+  I +GAD +LIPSRFEPCGL QL+AMRYG VPIV+  GGL DT+ +  T
Sbjct:  197 QIGLLKAGLHYADALTTVSPSYAREIQT-DTGGMGLGGLLRDRAAVLNGLLNGIDMTEWNPAHDPHVKAHFDRHS-LEHRTINREALRTRFGLDSSAG-PLFGIVSRLTGQKGIDLVLNALPFLISQQAQLVVLGSGDKGLEQGLLQAAQTHPRQIAVFSGYDEALSRQIFSGADAMLIPSRFEPCGLTQLYAMRYGAVPIVSRVGGLADTIIDANT 410          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA2_AGRT5 (Glycogen synthase 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glgA2 PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.067e-37
Identity = 89/211 (42.18%), Postives = 130/211 (61.61%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            ++++K G+  +  V TVSP YA+E+++ E  G+ +  ++  R+  ++GIVNG+D   WNP TD YI   + A+T    + L K AL   +GL   +  PV G + RL  QKG D+L   +P  I+   ++IV G G   +E  L+ L   YPE       ++  LAHMI AG+DFI+ PSRFEPCGL QL+A+RYG +PIV+ TGGL +T+
Sbjct:  194 MSFLKGGLTTASAVTTVSPTYAREILTPE-MGMGMHGVLARRRGDLRGIVNGVDHDVWNPATDPYILANFTAATAT-RRSLNKYALLQALGLAPTQG-PVFGVVSRLTWQKGIDLLPHVVPLIIERKGRLIVHGEGDTALEDSLQALAKRYPELVCAHIGYDERLAHMIQAGSDFIIQPSRFEPCGLTQLYALRYGALPIVSRTGGLAETI 401          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_DESVV (Glycogen synthase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=glgA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.394e-37
Identity = 92/225 (40.89%), Postives = 130/225 (57.78%), Query Frame = 1
Query:   22 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGL-PVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----EEGFTGFQMG 675
            N +KAGI  +D V TVSP YA+E++ G   G  LD I+RK    + GI+NG D   W+P  D+++  +Y   T +  K   K AL  E+GL P     P++GFIGRL  QKG D+L   +P  ++ +V +I+LG G    E +  +L   Y  +   +  +   LAH I AG+D  L+PSR+EPCGL Q++A+RYGT P+  + GGL DT+        TGF  G
Sbjct:  205 NLLKAGIAYADKVTTVSPSYAREIL-GPAYGSGLDGILRKRAHALHGILNGADYDIWSPGNDRFLPCRY-TPTDLAGKAQCKRALIEELGLDPHLARRPILGFIGRLRGQKGIDLLLDILPRLMESDVGVIILGEGNLTHEARALELMEAYRGRVCTIVSYTEDLAHRIQAGSDIFLMPSRYEPCGLTQMYALRYGTPPVATAVGGLRDTIVPWPSPESTGFTFG 427          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_DESVH (Glycogen synthase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=glgA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.394e-37
Identity = 92/225 (40.89%), Postives = 130/225 (57.78%), Query Frame = 1
Query:   22 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGL-PVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----EEGFTGFQMG 675
            N +KAGI  +D V TVSP YA+E++ G   G  LD I+RK    + GI+NG D   W+P  D+++  +Y   T +  K   K AL  E+GL P     P++GFIGRL  QKG D+L   +P  ++ +V +I+LG G    E +  +L   Y  +   +  +   LAH I AG+D  L+PSR+EPCGL Q++A+RYGT P+  + GGL DT+        TGF  G
Sbjct:  205 NLLKAGIAYADKVTTVSPSYAREIL-GPAYGSGLDGILRKRAHALHGILNGADYDIWSPGNDRFLPCRY-TPTDLAGKAQCKRALIEELGLDPHLARRPILGFIGRLRGQKGIDLLLDILPRLMESDVGVIILGEGNLTHEARALELMEAYRGRVCTIVSYTEDLAHRIQAGSDIFLMPSRYEPCGLTQMYALRYGTPPVATAVGGLRDTIVPWPSPESTGFTFG 427          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_GEOUR (Glycogen synthase OS=Geobacter uraniireducens (strain Rf4) GN=glgA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.378e-37
Identity = 87/218 (39.91%), Postives = 128/218 (58.72%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNI--IRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI------PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            K+N MK  IL +D++ TVS  Y +E+ + E  G  LD +  +R   + G++NG+D   W+P TD+ +   Y   T    K + K+ LQ  +GL    ++PVIG + RL  QKG D+LA  +P F++  +Q+++LGTG +   K L+ +      KARG    ++       LA  I AG+D  L+PS +EPCGL Q+ A+RYG VP+V  TGGL DTV
Sbjct:  201 KVNLMKGAILSADLITTVSETYCREIQTPES-GNGLDGVLGVRNADLHGVLNGLDYDLWDPATDRGLYKNYSV-TAPAGKAVNKKGLQKLLGLEPAADVPVIGIVSRLTAQKGFDLLAELMPKFVRSRLQLVILGTGDEKYLKLLQDI------KARGAGNISVNIGFHPELAPKIYAGSDIFLMPSHYEPCGLGQMIALRYGAVPLVRKTGGLADTV 410          
The following BLAST results are available for this feature:
BLAST of FC868685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_RHOCS4.791e-3840.19Glycogen synthase OS=Rhodospirillum centenum (stra... [more]
GLGA_NITEU4.791e-3843.19Glycogen synthase OS=Nitrosomonas europaea GN=glgA... [more]
GLGA_GLOVI8.173e-3841.71Glycogen synthase OS=Gloeobacter violaceus GN=glgA... [more]
GLGA_SYNE71.067e-3744.02Glycogen synthase OS=Synechococcus elongatus (stra... [more]
GLGA_PROM41.067e-3740.45Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_GRABC1.067e-3738.71Glycogen synthase OS=Granulibacter bethesdensis (s... [more]
GLGA2_AGRT51.067e-3742.18Glycogen synthase 2 OS=Agrobacterium tumefaciens (... [more]
GLGA_DESVV1.394e-3740.89Glycogen synthase OS=Desulfovibrio vulgaris subsp.... [more]
GLGA_DESVH1.394e-3740.89Glycogen synthase OS=Desulfovibrio vulgaris (strai... [more]
GLGA_GEOUR2.378e-3739.91Glycogen synthase OS=Geobacter uraniireducens (str... [more]

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Properties
Property NameValue
Genbank descriptionC31003E03EF AbioticL1 Citrus clementina cDNA clone C31003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868685 ID=FC868685; Name=FC868685; organism=Citrus clementina; type=EST; length=704bp
ACCTGTGAGAGGTTCAAAATCAACTGGATGAAAGCTGGAATATTAGAATC
AGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTG
GTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATT
AAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGA
CAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGC
CTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGA
AATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTC
AGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGA
TAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAG
TTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATAT
TCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAA
GCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGA
ACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGA
AGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTG
TGGA
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