FC868685

Overview
NameFC868685
Unique NameFC868685
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_DESDG (Glycogen synthase OS=Desulfovibrio desulfuricans (strain G20) GN=glgA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.105e-34
Identity = 85/211 (40.28%), Postives = 121/211 (57.35%), Query Frame = 1
Query:   22 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKT--GIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVD-RNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            N +K GI  +D V TVSP YA+E+ + E  G  L+ I+R+    + GI+NG D   W P  D+++   Y    +   K   K AL  E+GL       PV+GFIGRL +QKG D+L   I   ++  V +++LG G    E Q+  L   Y  +     ++   LAH I AGAD  L+PSR+EPCGL Q++A+R+GT P+ +S GGL DT+
Sbjct:  205 NLLKGGIAYADKVTTVSPSYAREITTPEF-GCGLEGILRRRTHALHGILNGADYDIWKPEDDRFLPCTYSPDRLA-GKQRCKRALLDELGLDSSLMERPVLGFIGRLRDQKGIDLLIDNIAQLMERQVGVVILGEGSLEYEAQVLHLMEEYKGRLCARVEYTEDLAHRIQAGADIFLMPSRYEPCGLTQIYALRFGTPPVASSLGGLRDTI 413          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_BURTA (Glycogen synthase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=glgA PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.105e-34
Identity = 84/213 (39.44%), Postives = 125/213 (58.69%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGE-DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKEN--VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            +++++KAG   +D + TVSP YA E+ + E   G+E     R+  + GI+NG+D + WNP TD+++   Y     M  K   K ALQ E+GL  D   P++  + RL  QK SDI+   +P  + ++  +Q  + G G + +E+  + L   YP +      ++  LAH I AGAD +L  +RFEPCGL QL+AMRYGT+PIV   GGL D+V
Sbjct:  197 QLSFLKAGARYADRLTTVSPTYAGEIQTAEFGCGLEGLYAARRDQLSGIMNGIDTELWNPATDRWLPQPYSIDD-MGGKAGCKAALQQELGLCADARAPLVASVCRLTSQKMSDIVLERLPEQLAQHPRMQFALHGRGDRALEQGFDALAAQYPRRVAVRIGYDETLAHRIHAGADILLHGARFEPCGLTQLYAMRYGTIPIVRRVGGLADSV 408          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_XANOR (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae GN=glgA PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.443e-34
Identity = 83/229 (36.24%), Postives = 132/229 (57.64%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR----KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 690
            ++++++ GI+ +D V TVS  YA++ ++G  +G  LD ++     K  + GIVNG+D   W+P TD+Y+   +  +     +    +  +A  GL      P+   + RL  QKG D++    P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+
Sbjct:  227 QMSFLRGGIVNADHVNTVSVSYAKQ-ITGPAQGCGLDRLLAGRAAKGALTGIVNGIDAS-WDPRTDEYLDSHFSVNQWQGRQDNAAQVRKA-FGLRESTG-PLFAVVSRLVHQKGLDLICEVAPQIVAAGGQIAVIGGGEPDIERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE 451          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_XANOM (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=glgA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.443e-34
Identity = 83/229 (36.24%), Postives = 132/229 (57.64%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR----KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 690
            ++++++ GI+ +D V TVS  YA++ ++G  +G  LD ++     K  + GIVNG+D   W+P TD+Y+   +  +     +    +  +A  GL      P+   + RL  QKG D++    P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+
Sbjct:  227 QMSFLRGGIVNADHVNTVSVSYAKQ-ITGPAQGCGLDRLLAGRAAKGALTGIVNGIDAS-WDPRTDEYLDSHFSVNQWQGRQDNAAQVRKA-FGLRESTG-PLFAVVSRLVHQKGLDLICEVAPQIVAAGGQIAVIGGGEPDIERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE 451          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_XANCP (Glycogen synthase OS=Xanthomonas campestris pv. campestris GN=glgA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.443e-34
Identity = 82/221 (37.10%), Postives = 129/221 (58.37%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR----KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGF 666
            ++++++ GI+ +D V TVS  YAQ+ ++G  +G  LD ++     K  + GIVNG+D   W+P TD+Y+   +  +     +    +  +A  GL      P+   + RL  QKG D++    P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF
Sbjct:  192 QMSFLRGGIVHADHVNTVSVSYAQQ-ITGPAQGCGLDRLLAGRAAKGALSGIVNGIDAS-WDPRTDEYLDSHFSVNHWQGRQANAAQVRKA-FGLRESTG-PLFAVVSRLVHQKGLDLICEVAPQIVAAGGQIAVIGGGEPEIEQQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGF 408          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_XANC8 (Glycogen synthase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=glgA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.443e-34
Identity = 82/221 (37.10%), Postives = 129/221 (58.37%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR----KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGF 666
            ++++++ GI+ +D V TVS  YAQ+ ++G  +G  LD ++     K  + GIVNG+D   W+P TD+Y+   +  +     +    +  +A  GL      P+   + RL  QKG D++    P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF
Sbjct:  192 QMSFLRGGIVHADHVNTVSVSYAQQ-ITGPAQGCGLDRLLAGRAAKGALSGIVNGIDAS-WDPRTDEYLDSHFSVNHWQGRQANAAQVRKA-FGLRESTG-PLFAVVSRLVHQKGLDLICEVAPQIVAAGGQIAVIGGGEPEIEQQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGF 408          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_XANC5 (Glycogen synthase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=glgA PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.443e-34
Identity = 83/229 (36.24%), Postives = 132/229 (57.64%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR----KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 690
            ++++++ GI+ +D V TVS  YA++ ++G  +G  LD ++     K  + GIVNG+D   W+P TD+Y+   +  +     +    +  +A  GL      P+   + RL  QKG D++    P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+
Sbjct:  227 QMSFLRGGIVNADHVNTVSVSYAKQ-ITGPAQGCGLDRLLAGRAAKGALTGIVNGIDAS-WDPRTDEYLDSHFSVNQWQGRQANAAQVRKA-FGLRESTG-PLFAVVSRLVHQKGLDLICEVAPQIVAAGGQIAVIGGGEPEIERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE 451          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_THET8 (Glycogen synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=glgA PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.443e-34
Identity = 81/218 (37.16%), Postives = 129/218 (59.17%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTG 663
            ++N MK GI+ +  V TVSP YA+E+ + E  G+ LD ++R+    ++GI+NG+D + ++P  D Y+   Y        K   KEA +   GL      PV+ ++GRL+ QKG D++  A+P  ++   ++ V G G   +++   + E   PE  R +  ++  +A +  AGA+ +L+PSRFEPCGL+Q+ A RYGT P+  + GGL DTVE+G  G
Sbjct:  173 RVNLMKGGIVFARRVTTVSPSYAEEIQTPEF-GMGLDGVLRRHAGKLRGILNGLDTEVFDPGKDPYLPAPYTREDP-SGKARAKEAFRERTGL----RPPVLAYVGRLDYQKGLDLVLKALPRLLEMGFRLYVQGVGDGGLQEAFLRAEEENPEGVRFLPAYDEAMARLAYAGAEAVLVPSRFEPCGLVQMIASRYGTPPVARAVGGLKDTVEDGRGG 384          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_SHIB3 (Glycogen synthase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=glgA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.443e-34
Identity = 78/215 (36.28%), Postives = 126/215 (58.60%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDK-GVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 651
            +I+++KAG+  +D +  VSP Y +E+   +   G+E  L    R+  + G++NG+D + W+P TD  +  +Y   T+ D K   K  LQ  +GL VD  +P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        YP +      ++   +H I+ GAD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +
Sbjct:  194 QISFLKAGLYYADHITAVSPTYTREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLED-KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_ACIAC (Glycogen synthase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.443e-34
Identity = 80/214 (37.38%), Postives = 123/214 (57.48%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 651
            +++ +KAG+  +D + TVSP YA+E+ + E  G  LD ++R     ++GI+NG+D   WNP  D  I   + A   ++ K   K AL+  +GL  D +  + G +GR+ EQKG D +       +++  Q+ +LG+G   +E  L  L   +P        F+  LAH I AG+D  L+PSRFEPCGL Q+++  YGT P+V  TGGL D+V +
Sbjct:  205 QLSMLKAGLQYADAITTVSPTYAREIQTPE-LGFGLDGVLRARAGRLQGILNGIDTALWNPSQDTLIPAPFSADR-LEGKAACKAALRRTLGLAQDGDRMLFGLVGRMTEQKGIDWVIGGAERLLRQGGQLAILGSGDPALESALRALAKRHPRHMHVTVGFDESLAHGIEAGSDSFLMPSRFEPCGLNQMYSQAYGTPPVVTPTGGLADSVTD 416          
The following BLAST results are available for this feature:
BLAST of FC868685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_DESDG1.105e-3440.28Glycogen synthase OS=Desulfovibrio desulfuricans (... [more]
GLGA_BURTA1.105e-3439.44Glycogen synthase OS=Burkholderia thailandensis (s... [more]
GLGA_XANOR1.443e-3436.24Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_XANOM1.443e-3436.24Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_XANCP1.443e-3437.10Glycogen synthase OS=Xanthomonas campestris pv. ca... [more]
GLGA_XANC81.443e-3437.10Glycogen synthase OS=Xanthomonas campestris pv. ca... [more]
GLGA_XANC51.443e-3436.24Glycogen synthase OS=Xanthomonas campestris pv. ve... [more]
GLGA_THET81.443e-3437.16Glycogen synthase OS=Thermus thermophilus (strain ... [more]
GLGA_SHIB31.443e-3436.28Glycogen synthase OS=Shigella boydii serotype 18 (... [more]
GLGA_ACIAC1.443e-3437.38Glycogen synthase OS=Acidovorax avenae subsp. citr... [more]

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Properties
Property NameValue
Genbank descriptionC31003E03EF AbioticL1 Citrus clementina cDNA clone C31003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868685 ID=FC868685; Name=FC868685; organism=Citrus clementina; type=EST; length=704bp
ACCTGTGAGAGGTTCAAAATCAACTGGATGAAAGCTGGAATATTAGAATC
AGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTG
GTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATT
AAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGA
CAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGC
CTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGA
AATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTC
AGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGA
TAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAG
TTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATAT
TCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAA
GCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGA
ACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGA
AGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTG
TGGA
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