FC868685

Overview
NameFC868685
Unique NameFC868685
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA1_AGRT5 (Glycogen synthase 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.221e-33
Identity = 82/211 (38.86%), Postives = 126/211 (59.72%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            ++++K G+  +  + TVSP YA+E+++ E  G+ L+ +I  R   + GIVNG+D   WNP TD  I   Y A+ + + + L K+A+     +  D + P+   I RL  QKG D++A A+   +    +++VLG G   +E  L      +  +      +N PL+H++ AG D I+IPSRFEPCGL QL+A+RYG +P+VA TGGL DTV
Sbjct:  197 VSFLKGGLQTATALSTVSPSYAEEILTAEF-GMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKN-RALNKKAVAEHFRIDDDGS-PLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTV 404          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_DESHD (Glycogen synthase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=glgA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.595e-33
Identity = 85/211 (40.28%), Postives = 120/211 (56.87%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            +N+MKAGI+ SD V TVSP YA+E +     G  L  +I  RK  + GI+NG+  + W              S  +  K   +  LQ ++    +  IP++  I RL EQKG D+L   +   +  +++++VLGTG    E++L++    YP K R +  +   LAH I AGAD  L+PSRFEPCG+ Q+ AM YGT+PIV  TGGL DTV
Sbjct:  199 VNFMKAGIMHSDQVTTVSPTYARE-IQHPYFGEGLHGVIQGRKDSLLGILNGVP-RPW-------------PSPTLADKRANRMKLQEQLNFTNNEEIPILSMISRLVEQKGLDLLLHVLDEILALDIRLVVLGTGDAHYEERLQRFAEGYPGKLRVILGYQEELAHRIYAGADIFLMPSRFEPCGIAQMIAMSYGTIPIVRETGGLKDTV 394          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_SYNS3 (Glycogen synthase OS=Synechococcus sp. (strain CC9311) GN=glgA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.083e-33
Identity = 84/227 (37.00%), Postives = 130/227 (57.27%), Query Frame = 1
Query:   28 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSF 681
            M A +L +D V  VSP Y++E+ + E    +LD ++      ++GI+NG+D++ WNP TD+ +   + A   +  +   K+ LQ  +GL V  +  ++G + RL +QKG D+L       +   + QI+VLGTG + +E  L Q+   +P +      ++  L+ +I AG+D  L+PSRFEPCG+ QL AMRYG VP+V   GGLVDTV      ++  TGF    F
Sbjct:  180 MAAALLYADGVNAVSPTYSREIRTSE-YSEKLDGLLNYISGKLRGILNGIDLEAWNPATDRALPATFSADD-LSGRARNKQVLQERMGLEVRPDAYLLGMVSRLVDQKGVDLLLQVADRLLAYTDTQIVVLGTGDRGLESGLWQMASRHPGRVSVFLTYDDDLSRLIYAGSDAFLMPSRFEPCGISQLLAMRYGCVPVVRKVGGLVDTVPPHDPAQQSGTGFCFDRF 404          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_PELCD (Glycogen synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=glgA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.083e-33
Identity = 76/212 (35.85%), Postives = 125/212 (58.96%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            +++++K+G++ +DM+ TVS  Y  E+ + +  G   D I+  R   + G++NG+D + WNP  D  +   Y     ++ K   K  LQ ++GL  D ++P++  + RL  QKG D++  A    ++  VQ+++LG+G +    +  QL   +P +      F+  LA +I AG+D  L+PS +EPCGL QL A+RYG+VP+V  TGGL DTV
Sbjct:  201 QVSFLKSGLVYADMITTVSETYCAEIQTPQ-MGHGFDGILHARAARLFGVLNGIDDKLWNPQCDPALTAPYSVDD-LEGKAANKRQLQKQLGLSCDADVPLLTMVTRLASQKGLDLVEQAWEQLLQRGVQLVILGSGDQDFMDRFAQLGAQHPTQTAVRLGFDDRLARLIYAGSDMFLMPSHYEPCGLGQLIALRYGSVPVVRKTGGLADTV 410          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_ESCF3 (Glycogen synthase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=glgA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.083e-33
Identity = 76/215 (35.35%), Postives = 126/215 (58.60%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDK-GVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 651
            +I+++K+G+  +D +  VSP YA+E+   +   G+E  L    R+  + G++NG+D + W+P TD  +  +Y   T ++ K   K  LQ  +GL VD   P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        +P +      ++   +H I+ GAD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +
Sbjct:  194 QISFLKSGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDT-LEEKAENKRQLQIAMGLKVDDKAPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_DEIDV (Glycogen synthase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=glgA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.721e-33
Identity = 86/212 (40.57%), Postives = 119/212 (56.13%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVS---GEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            +N MKAG++ ++ V TVSP YA+E+ +   GE     L  +  +  + GI+NG+D + WNP TD  +    D +     K    +AL+ E GL      PV+G + RL +QKG D+L  A+P  +  N  ++VLG G   +   LE        +       N  LAH I AG+D   +PSRFEPCGL Q+ AMRYGT+P+V  TGGLVDTV
Sbjct:  181 LNLMKAGLIAANHVTTVSPQYAREITTQQYGEGLQGVLLRLTLEGRLSGIINGLDQERWNPRTDPDVPAYSDLA----GKAAATQALRTEFGLD---KAPVLGVVSRLADQKGMDLLIEALPRLV-HNWNVVVLGGGDPLLTAALEGWA--QHPRVSFAQGMNEALAHQIYAGSDAFAMPSRFEPCGLSQMIAMRYGTLPVVRETGGLVDTV 382          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA1_RHIME (Glycogen synthase 1 OS=Rhizobium meliloti GN=glgA1 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.721e-33
Identity = 83/211 (39.34%), Postives = 123/211 (58.29%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            + ++K G+  +  + TVSP YAQE+++ E  G+ LD ++  R   + GIVNG+D + W+P TD +I   Y   T +  +   ++AL+   GL      P+   I RL  QKG D++A A    +    +++VLG+G   +E  L             V  ++ PL+H++ AGAD ILIPSRFEPCGL QL+ +RYG VP+VA TGGL DT+
Sbjct:  198 VGFLKGGLQTASAITTVSPSYAQEILTPEF-GMGLDGLLSSRVADLTGIVNGIDGETWDPQTDPHIPAHYGPGT-LKRRAGNRKALEERFGLEKGPG-PIFCVISRLTWQKGMDLVAEAADDIVALGGKLVVLGSGDPALESALMAAASRNRGHIGMVTGYDEPLSHLMQAGADAILIPSRFEPCGLTQLYGLRYGCVPVVARTGGLTDTI 405          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_SALTY (Glycogen synthase OS=Salmonella typhimurium GN=glgA PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.553e-33
Identity = 73/216 (33.80%), Postives = 128/216 (59.26%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG----IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 651
            +++++KAG+  +D +  VSP YA+E+   +     ++ ++R+  ++G    I+NG+D + WNP +D  +  +Y   T ++ K   K  LQ  +GL V+  +P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        +P +      ++   +H I+ GAD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +
Sbjct:  194 QLSFLKAGLYYADHITAVSPTYAREITEPQF-AYGMEGLLRQRHLEGRLSGILNGVDEKIWNPESDLLLASRYTRDT-LEEKAENKRQLQIAMGLKVNDKVPLFAVVSRLTNQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_SALSV (Glycogen synthase OS=Salmonella schwarzengrund (strain CVM19633) GN=glgA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.553e-33
Identity = 73/216 (33.80%), Postives = 128/216 (59.26%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG----IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 651
            +++++KAG+  +D +  VSP YA+E+   +     ++ ++R+  ++G    I+NG+D + WNP +D  +  +Y   T ++ K   K  LQ  +GL V+  +P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        +P +      ++   +H I+ GAD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +
Sbjct:  194 QLSFLKAGLYYADHITAVSPTYAREITEPQF-AYGMEGLLRQRHLEGRLSGILNGVDEKIWNPESDLLLASRYTRDT-LEEKAENKRQLQIAMGLKVNDKVPLFAVVSRLTNQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_SALPK (Glycogen synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=glgA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.553e-33
Identity = 73/216 (33.80%), Postives = 128/216 (59.26%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG----IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 651
            +++++KAG+  +D +  VSP YA+E+   +     ++ ++R+  ++G    I+NG+D + WNP +D  +  +Y   T ++ K   K  LQ  +GL V+  +P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        +P +      ++   +H I+ GAD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +
Sbjct:  194 QLSFLKAGLYYADHITAVSPTYAREITEPQF-AYGMEGLLRQRHLEGRLSGILNGVDEKIWNPESDLLLASRYTRDT-LEEKAENKRQLQIAMGLKVNDKVPLFAVVSRLTNQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
The following BLAST results are available for this feature:
BLAST of FC868685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA1_AGRT51.221e-3338.86Glycogen synthase 1 OS=Agrobacterium tumefaciens (... [more]
GLGA_DESHD1.595e-3340.28Glycogen synthase OS=Desulfitobacterium hafniense ... [more]
GLGA_SYNS32.083e-3337.00Glycogen synthase OS=Synechococcus sp. (strain CC9... [more]
GLGA_PELCD2.083e-3335.85Glycogen synthase OS=Pelobacter carbinolicus (stra... [more]
GLGA_ESCF32.083e-3335.35Glycogen synthase OS=Escherichia fergusonii (strai... [more]
GLGA_DEIDV2.721e-3340.57Glycogen synthase OS=Deinococcus deserti (strain V... [more]
GLGA1_RHIME2.721e-3339.34Glycogen synthase 1 OS=Rhizobium meliloti GN=glgA1... [more]
GLGA_SALTY3.553e-3333.80Glycogen synthase OS=Salmonella typhimurium GN=glg... [more]
GLGA_SALSV3.553e-3333.80Glycogen synthase OS=Salmonella schwarzengrund (st... [more]
GLGA_SALPK3.553e-3333.80Glycogen synthase OS=Salmonella paratyphi A (strai... [more]

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Properties
Property NameValue
Genbank descriptionC31003E03EF AbioticL1 Citrus clementina cDNA clone C31003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868685 ID=FC868685; Name=FC868685; organism=Citrus clementina; type=EST; length=704bp
ACCTGTGAGAGGTTCAAAATCAACTGGATGAAAGCTGGAATATTAGAATC
AGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTG
GTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATT
AAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGA
CAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGC
CTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGA
AATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTC
AGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGA
TAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAG
TTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATAT
TCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAA
GCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGA
ACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGA
AGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTG
TGGA
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