FC868685

Overview
NameFC868685
Unique NameFC868685
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_PROM0 (Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9301) GN=glgA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.553e-33
Identity = 83/209 (39.71%), Postives = 124/209 (59.33%), Query Frame = 1
Query:   28 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            M A +L +D V  VSP YA E+ + E  G  L+ ++      ++GI+NG+D+ EWNP  D  +  K+  +  ++ +   K+ LQ E+GL V+    ++G + RL +QKG D+L       +   + QI VLGTG + +E  L QL + YP +      ++  L+ +I  G+D  L+PSRFEPCG+ QL AMRYG++PIV   GGLVDTV
Sbjct:  180 MAAAMLYADRVNAVSPTYADEIKTHE-YGESLEGLLNYISGKLRGILNGIDLDEWNPAKDSVLPAKFSINN-LENRQENKKILQREMGLEVNPKKYLLGMVSRLVDQKGVDLLLQVSRRLLAYTDSQIAVLGTGDRYLESGLWQLALDYPGRFSVFLTYDDSLSRLIYGGSDAFLMPSRFEPCGISQLLAMRYGSIPIVRRVGGLVDTV 386          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_PELPB (Glycogen synthase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.553e-33
Identity = 73/218 (33.49%), Postives = 123/218 (56.42%), Query Frame = 1
Query:    4 CERFKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 651
            C   ++N +  G+  +D++ T S  YA+E+V    +   L  ++ +   K  GI+NG+D ++WN   DK I  +Y     MD K   K+AL  E GLP     PV+G I   +E +G+++L  ++      ++Q+I+ G+G K  EK  +   + +PE+     +++    H+ IAG D +L+P   E CG+IQ+ AM YGT+P+  + GG+V+T+EE
Sbjct:  206 CSNDEVNMLYTGVEHADLLTTTSKVYAEEIVHDGLQTYGLGRVLEEHQAKFYGILNGIDSRQWNSAADKLIKKRYSLEH-MDGKLDNKKALLEEAGLPYTEGTPVVGVILNFDEFQGAELLQQSLEQLAALDIQLIISGSGDKKYEKVFQDFALEHPEQVSVHGEYSDSFFHLAIAGLDILLMPGMIESCGMIQMFAMNYGTIPVAYAGGGIVETIEE 422          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_DEIGD (Glycogen synthase OS=Deinococcus geothermalis (strain DSM 11300) GN=glgA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.553e-33
Identity = 92/230 (40.00%), Postives = 129/230 (56.09%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEA 699
            +N MKAG++ ++ V TVSP YA+E+ + +  +G+E  L  +  +  + GI+NG+D   WNP TD  I    D +     K      L+AE GL    + P++G + RL  QKG D+L  A+P  + E   ++VLG G   +   L      Y  +   V+  N  LAH I AGAD   +PSRFEPCGL Q+ A+RYGT+PIV  TGGLVDTV  G  GF+    + +  A
Sbjct:  181 LNLMKAGLVFAEQVTTVSPTYAREITTPQYGEGLEGVLIRLALEGRLSGILNGLDQDRWNPRTDPDIRPYADPA----GKAANGSVLRAEFGLD---DAPILGVVSRLANQKGIDLLIEALPELV-ERWNVVVLGGGDPLLTAALHGWA--YHPRVAFVSGLNEALAHRIYAGADAFAMPSRFEPCGLSQMIALRYGTLPIVRETGGLVDTV-PGDVGFRFADATTEALA 399          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA2_RHIME (Glycogen synthase 2 OS=Rhizobium meliloti GN=glgA2 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.553e-33
Identity = 82/211 (38.86%), Postives = 123/211 (58.29%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            I ++K G+  +D +  VSP YA+E++S    G+ L+ ++  R   + GIVNG+D++ W+P +D  I   Y A   +   P  ++ L    GLP D   P+   + RL  QKG D+LAA     +K    +I+ G G++ +E     L   +P+       ++  LAH I AGAD +L+PSRFEPCGL QL+A+RYG VP+VA TGGL +T+
Sbjct:  197 IGFLKGGLQAADAITVVSPTYAREIMSPAF-GMGLEGVMNERHADVVGIVNGIDLEVWDPSSDPCIEHHYSARVPLRRLPN-RQVLLRHFGLP-DTCGPIFASVNRLTWQKGMDLLAATAGEIVKNGGTLIIHGQGEEKLEAAFMDLMRRFPQNISVSIGYDEHLAHRIHAGADAMLVPSRFEPCGLTQLYALRYGCVPVVARTGGLSETI 404          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA1_SYNJB (Glycogen synthase 1 OS=Synechococcus sp. GN=glgA1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.553e-33
Identity = 86/216 (39.81%), Postives = 130/216 (60.19%), Query Frame = 1
Query:   13 FKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGV---AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            F +N+MK GI+ S+ V TVSP++A E+  G D G  L + +   +   +G++NG+D   WNP  D++I V+Y A T ++ K   K+AL+  + L  D + P++ +IGRL+EQKG  ++  AI   + +N Q ++LG+  +         E  Y      V     FN  L+H+I AGAD I++PS +EPCGL Q+  ++YGTVP+V   GGLVDTV
Sbjct:  203 FSLNFMKGGIVFSNFVTTVSPNHALEVQFG-DYGYGLGHTLYLHRHKFRGVLNGIDYDIWNPEIDRFIPVRYTAQT-LENKAKNKKALRDRLLLQ-DVDKPIVAYIGRLDEQKGVHLVHHAIYRSLFKNAQFVLLGSATERGIGAWFAHEKSYLNNNPDVHIELGFNEELSHLIYAGADIIVVPSHYEPCGLTQMIGLKYGTVPVVRGVGGLVDTV 415          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_PROM9 (Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9312) GN=glgA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.641e-33
Identity = 84/209 (40.19%), Postives = 124/209 (59.33%), Query Frame = 1
Query:   28 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            M A +L +D V  VSP YA E+ + E  G  L+ ++      ++GI+NG+D+ EWNP  D  +  K+  + + + +   K+ LQ E+GL V+    ++G + RL +QKG D+L       +   + QI VLGTG + +E  L QL + YP +      ++  L+ +I  G+D  L+PSRFEPCG+ QL AMRYG+VPIV   GGLVDTV
Sbjct:  180 MAAAMLYADRVNAVSPTYADEIKTHE-YGESLEGLLNYISGKLRGILNGIDLDEWNPAKDPVLPAKFSINNLKN-RTENKKILQREMGLEVNPKKYLLGMVSRLVDQKGVDLLLQVSRRLLAYTDSQIAVLGTGDRYLESGLWQLALDYPGRFSVFLTYDDSLSRLIYGGSDAFLMPSRFEPCGISQLLAMRYGSVPIVRRVGGLVDTV 386          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_JANSC (Glycogen synthase OS=Jannaschia sp. (strain CCS1) GN=glgA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.641e-33
Identity = 86/212 (40.57%), Postives = 127/212 (59.91%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            +I+ +KAG++ +  + TVS  YA+EL++ +  G+ +D ++R  +  + GIVNG+D+  WNP TD  I       T    K   K ALQAE GL      P+   + RL +QKG D+L  A+   ++   Q+ VLG+G   +E  L +     P  A  +  ++  L+H ++AG D IL+PSRFEPCGL QL+ +RYGT+P+VA TGGL DTV
Sbjct:  194 QISALKAGLMGAAQITTVSQTYAEELMTPQF-GMGMDGVLRHRRDALTGIVNGIDLDVWNPETDPQI----TPYTTFKGKAANKAALQAEFGLSKAPG-PLCVLVSRLTDQKGIDLLLDAMHVVLERGGQVAVLGSGAPDLEVCLLERADAEPNLAVKIG-YDEALSHRMMAGGDCILVPSRFEPCGLTQLYGLRYGTLPLVALTGGLADTV 398          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_RHOS4 (Glycogen synthase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=glgA PE=3 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 6.061e-33
Identity = 79/208 (37.98%), Postives = 123/208 (59.13%), Query Frame = 1
Query:   28 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            +KAG++ +D + TVSP YA EL+  E  G+ L  +I  R   + GI+NG+D   W+P  ++     YDA + + AK   +  L     L V   + ++  + RL  QKG D++   +P FI     + VLGTG  P+E  + +LE+ +P +      ++  L+H++ AG D +L+PSRFEPCGL Q++ +RYG +P+VA TGGL DT+
Sbjct:  205 LKAGLVSADHITTVSPTYACELMRPEF-GMGLQGVIAQRAGQVTGILNGVDTDIWSPEVEER---PYDAES-LKAKAENRAVLSGAFKLSVPGPLAIL--VSRLTYQKGIDLIPEVLPDFIAAGGGLAVLGTGDAPLEAAMRELEVRFPGRVGVRIGYDEGLSHLMFAGGDAVLVPSRFEPCGLTQMYGLRYGAIPVVALTGGLADTI 405          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_RHIL3 (Glycogen synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=glgA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.061e-33
Identity = 81/211 (38.39%), Postives = 123/211 (58.29%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            + ++K G+  +  + TVSP YA E+++ E  G+ L+ +I  R   + GIVNG+D   WNP TD  +   Y  +T+ + +   + ++    GL  D + P+   I RL  QKG DI+A      +    +++VLG+G+  +E  L      +P +      +N P++H++ AG D I+IPSRFEPCGL QL+ +RYG VPIVA TGGL DTV
Sbjct:  197 VGFLKGGLKTAHAITTVSPTYADEILTSEF-GMGLEGVIASRVDDLHGIVNGIDTDIWNPATDPVVHTHYGQTTLKNREEN-RRSIAEFFGLDND-DAPIFCVISRLTWQKGMDIVANVADEIVAMGGKLVVLGSGEAALEGALLASASRHPGRVGVSIGYNEPMSHLMQAGCDAIIIPSRFEPCGLTQLYGLRYGCVPIVARTGGLNDTV 404          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_ENTS8 (Glycogen synthase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=glgA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.061e-33
Identity = 74/216 (34.26%), Postives = 125/216 (57.87%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG----IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 651
            +I+++KAG+  +D +  VSP YA+E+   +     L+ ++++      + GI+NG+D   WNP  D  +  +Y   T ++ K   K  LQ  +GL V+  +P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        +P +      ++   +H I+ GAD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +
Sbjct:  194 EISFLKAGLYYADHITAVSPTYAREITEPQF-AYGLEGLLKQRHSEGRLSGILNGVDENIWNPAHDLLLASRYTRDT-LEEKAENKRQLQIAMGLKVNDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
The following BLAST results are available for this feature:
BLAST of FC868685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_PROM03.553e-3339.71Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_PELPB3.553e-3333.49Glycogen synthase OS=Pelodictyon phaeoclathratifor... [more]
GLGA_DEIGD3.553e-3340.00Glycogen synthase OS=Deinococcus geothermalis (str... [more]
GLGA2_RHIME3.553e-3338.86Glycogen synthase 2 OS=Rhizobium meliloti GN=glgA2... [more]
GLGA1_SYNJB3.553e-3339.81Glycogen synthase 1 OS=Synechococcus sp. GN=glgA1 ... [more]
GLGA_PROM94.641e-3340.19Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_JANSC4.641e-3340.57Glycogen synthase OS=Jannaschia sp. (strain CCS1) ... [more]
GLGA_RHOS46.061e-3337.98Glycogen synthase OS=Rhodobacter sphaeroides (stra... [more]
GLGA_RHIL36.061e-3338.39Glycogen synthase OS=Rhizobium leguminosarum bv. v... [more]
GLGA_ENTS86.061e-3334.26Glycogen synthase OS=Enterobacter sakazakii (strai... [more]

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Properties
Property NameValue
Genbank descriptionC31003E03EF AbioticL1 Citrus clementina cDNA clone C31003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868685 ID=FC868685; Name=FC868685; organism=Citrus clementina; type=EST; length=704bp
ACCTGTGAGAGGTTCAAAATCAACTGGATGAAAGCTGGAATATTAGAATC
AGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTG
GTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATT
AAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGA
CAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGC
CTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGA
AATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTC
AGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGA
TAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAG
TTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATAT
TCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAA
GCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGA
ACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGA
AGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTG
TGGA
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