FC868685

Overview
NameFC868685
Unique NameFC868685
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA1_SYNJA (Glycogen synthase 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.303e-32
Identity = 83/215 (38.60%), Postives = 127/215 (59.07%), Query Frame = 1
Query:   13 FKINWMKAGILESDMVLTVSPHYAQELVSGE-DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGV---AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            F +N+MK GI+ S+ V TVSP +A E   G  + G+     + +   +G++NG+D   WNP  D++I   Y A T ++ K   K+AL+ ++ L  D + P++ +IGRL+EQKG  ++  AI   + +N Q ++LG+  +P        E  Y      V     FN  L+H+I AGAD +++PS +EPCGL Q+  ++YGTVP+V   GGLVDTV
Sbjct:  203 FALNFMKGGIVFSNFVTTVSPTHALEARFGNYNYGLGHTLYLHQHKFRGVLNGIDYDIWNPEIDRFIPFHYTAQT-LENKAKNKKALRDQLWLQ-DVDKPIVAYIGRLDEQKGVHLVHHAIYRSLFKNAQFVLLGSATEPGIGAWFAHEKRYLNDNPDVHIELGFNEELSHLIYAGADILVVPSHYEPCGLTQMIGLKYGTVPVVRGVGGLVDTV 415          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_THEEB (Glycogen synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.008e-32
Identity = 81/211 (38.39%), Postives = 127/211 (60.19%), Query Frame = 1
Query:   22 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            N M A +  +D V TVSP YA+++ + E  G +L+ ++      + GI+NG+D + ++P +D+ +   Y A T ++ +   K ALQ E+GL V+    ++G + RL EQKG D+L   +  F+   + Q ++LGTG +  E Q+ Q+   +P +      ++  L+  I  GAD  ++PSRFEPCG+ Q+ A+RYG VPIV  TGGLVDTV
Sbjct:  178 NTMAAALQYADRVNTVSPTYAEQIKTPE-YGEKLEGLLSFISGKLSGILNGIDTELFDPSSDRALAQNYTADT-LERRRANKIALQEELGLEVNSGAFLVGMVSRLVEQKGLDLLIQILDRFLAYTDSQFVLLGTGDRYYETQMWQIASRFPGRCSVQLLYSDVLSRRIYGGADAFIMPSRFEPCGISQMIALRYGCVPIVRRTGGLVDTV 386          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_BORPA (Glycogen synthase OS=Bordetella parapertussis GN=glgA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.131e-32
Identity = 82/216 (37.96%), Postives = 128/216 (59.26%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIG-VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 651
            +N++KAGI  +  V TVS  YA+E+++    G  L  ++R  G  +  + NG+D   WNP  D ++G +++DA  + + K   K ALQAE+GL    +  V+    RL  QK +D+  AA+P  ++  E++Q  ++G G+  +E  L  L   YP +      ++ PLAH + AGAD +L  SRFEP GL  L+AMRYGT+P+ +  GG+VDT+ +
Sbjct:  205 VNFLKAGIRYATRVTTVSRAYAREILTPAF-GCGLHGLLRARGADLSPVPNGIDTALWNPAADPHLGGLRFDALDMRN-KACCKAALQAELGLQPRADATVLAMGSRLTGQKMADVAIAALPALLEAHEHLQFALIGRGEPALETALRALAARYPGRCAVHIGYDEPLAHRLHAGADLLLHGSRFEPFGLTPLYAMRYGTLPVASRVGGMVDTIRD 418          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_PROMP (Glycogen synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=glgA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.701e-32
Identity = 80/209 (38.28%), Postives = 125/209 (59.81%), Query Frame = 1
Query:   28 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            M A +L +D V  VSP YA E+ + E  G  L+ ++      ++GI+NG+D+ EW+P  DK +  +++    ++++   K  LQ E+GL V+    ++G + RL +QKG D++       +   + QI +LGTG + +E  L QL + YP +      ++  L+ +I  G+D  L+PSRFEPCG+ QL AMRYG++PIV   GGLVDTV
Sbjct:  180 MAAAMLYADRVNAVSPTYADEIKTHE-YGESLEGLLNYISGKLRGILNGIDLNEWDPDKDKVLPAQFNIKN-LESRLENKIILQKEMGLEVNSKKYLLGMVSRLVDQKGVDLVLQVSRRLLAYTDSQIAILGTGDRSLESGLWQLALDYPGRFSVFLTYDDSLSRLIYGGSDAFLMPSRFEPCGISQLLAMRYGSIPIVRRVGGLVDTV 386          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA2_METCA (Glycogen synthase 2 OS=Methylococcus capsulatus GN=glgA2 PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.701e-32
Identity = 85/223 (38.12%), Postives = 126/223 (56.50%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVS-GEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKP--------MEKQLEQ-----LEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            IN MK GI+ ++ V TVSP YA E    G+  G+E    I      G+VNG+D   WNP  D +I V ++  T+ + K   K+AL+  + L  D   P++ F+GRL+ QKG +++  A+ + + +  Q ++LG+            +++Q        LEI Y E+          LAH++ AG+D +++PSRFEPCGL QL AMRYGT+P+V   GGL DTV
Sbjct:  202 INLMKGGIVYANFVTTVSPRYAMEAKDQGQGFGLEPTLHIHHMKYGGVVNGIDYDVWNPEIDPHIPVHFNVDTI-EGKYADKKALRDRL-LLADNEKPIVSFVGRLDPQKGIELIRHALFYTLGQGGQFVLLGSSPDGAINGYFWGLKRQFNDNPDCHLEIGYNEE----------LAHLVYAGSDVMVVPSRFEPCGLTQLIAMRYGTIPVVREIGGLADTV 412          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_RALSO (Glycogen synthase OS=Ralstonia solanacearum GN=glgA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.752e-32
Identity = 81/230 (35.22%), Postives = 130/230 (56.52%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKEN--VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE---------GFTGF 666
            + +++KAG++ +D + TVS  YA+E+++ +  G  + +++R  +  +  I+NG+D   WNP  D Y+   + A   +  K   K  LQ  + LP D + P++    RL  QK +D+   A+P  ++ +  +Q+ VLG G++  E  +  L   +P +   V  +    AHM+ AGAD +L  SRFEPCGL  L+AMRYGTVP+ +  GGLVDT+ +         G TGF
Sbjct:  197 QFSFLKAGLMWADRITTVSRTYAREILT-DAFGYGMQDVLRARRHDLVAILNGIDNAVWNPSKDAYLSRPFFAGN-LSGKHAAKLQLQTLLRLPKDAHAPLLALGSRLTHQKMADVALQALPQMLEAHPDLQVAVLGCGERRYESAMAALAERHPRRMAAVIGYTERNAHMLHAGADLLLHGSRFEPCGLTPLYAMRYGTVPVASRVGGLVDTIADRGSPEAALRGATGF 424          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_DEIRA (Glycogen synthase OS=Deinococcus radiodurans GN=glgA PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.752e-32
Identity = 92/218 (42.20%), Postives = 125/218 (57.34%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV--EEGF 657
            +N MKAG+  +  V TVSP YAQE+ + +  +G+E  L  +  +  + GI+NG+D   WNP TD  I    D +     K    +AL+ E GL    + P++  + RL +QKG D+L  A+P  +++   ++VLG G   +E  L      +P  A   +  N PLAH I AGA    +PSRFEPCGL QL AMRYGT+PIV  TGGL DTV  E GF
Sbjct:  182 LNLMKAGLNFAGHVTTVSPTYAQEITTPQYGEGLEGLLVRLTHEGRLSGILNGLDQDRWNPRTDPDIAAYSDPA----GKAGAVKALRQEFGLD---DAPILATVSRLADQKGMDLLITALPELVRD-WNVVVLGGGDPLLEAALTGWAN-HPRVAFA-SGMNEPLAHRIYAGAHAFAMPSRFEPCGLSQLIAMRYGTLPIVRETGGLADTVPPEVGF 389          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA2_SYNJB (Glycogen synthase 2 OS=Synechococcus sp. GN=glgA2 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.752e-32
Identity = 84/212 (39.62%), Postives = 126/212 (59.43%), Query Frame = 1
Query:   22 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLG-TGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            N M AGIL +D V TVSP YA E+ +    G  L +++   G  ++GI+NG+D+  ++P TD  +   +     +  +   K  LQA++GL V+ +  ++G + RL EQKG D+L  A+  F+   + Q ++LG +G+   E ++ ++   +P K      +   LA +I  GAD  L+PSRFEPCG+ Q+ AMRYG VPIV  TGGLVDTV
Sbjct:  190 NTMAAGILYADQVNTVSPTYAMEIRTPLH-GEGLQDLLAWKGERLRGILNGIDIDRFDPRTDPDLEANFSIDD-LSGRAANKATLQAKLGLTVNPDTFLMGMVARLVEQKGIDLLIQALDRFLDYSDAQFVLLGGSGEAYYEGRIREMAERHPGKMAYQKGYQPKLAQLIYGGADAFLMPSRFEPCGISQMIAMRYGCVPIVRRTGGLVDTV 399          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_RHILW (Glycogen synthase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=glgA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.493e-31
Identity = 79/211 (37.44%), Postives = 120/211 (56.87%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRK--TGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            + ++K G+  +  + TVSP YA E+++ E  G+ L+ +I      + GIVNG+D   WNP TD  +   Y  +T+ + +   +    AE     + + P+   I RL  QKG DI+A      +    +++VLG+G+  +E  L      +P +      +N P++H++ AG D I+IPSRFEPCGL QL+ +RYG VPIVA TGGL DTV
Sbjct:  197 VGYLKGGLQTAHAITTVSPTYADEILTPEF-GMGLEGVIASHIDNLHGIVNGIDTDIWNPATDPVVHTHYGPTTLKNREENRRSI--AEFFHLDNDDAPIFCVISRLTWQKGMDIVANIADEIVAMGGKLVVLGSGEAALEGALLASASRHPGRIGVSIGYNEPMSHLMQAGCDAIIIPSRFEPCGLTQLYGLRYGCVPIVARTGGLNDTV 404          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_RHIEC (Glycogen synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=glgA PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.493e-31
Identity = 81/209 (38.76%), Postives = 120/209 (57.42%), Query Frame = 1
Query:   25 WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            ++K G+  +  + TVSP YA E+++ E  G+ L+ +I  R   + GIVNG+D   WNP TD  +   Y  +T+ + +   +    AE     + + P+   I RL  QKG DI+A      +    +++VLG+G+  +E  L       P +      +N P++H++ AG D I+IPSRFEPCGL QL+A+RYG VPIVA TGGL DTV
Sbjct:  199 FLKGGLQTAHAITTVSPTYADEILTPEF-GMGLEGVIATRIDDLHGIVNGIDTDVWNPATDPVVHTHYGPTTLKNREENRRSI--AEFFHLDNDDAPIFCVISRLTWQKGMDIVANVADRIVAMGGKLVVLGSGEAALEGALLASASRNPGRIGVSIGYNEPMSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCVPIVARTGGLNDTV 404          
The following BLAST results are available for this feature:
BLAST of FC868685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA1_SYNJA2.303e-3238.60Glycogen synthase 1 OS=Synechococcus sp. (strain J... [more]
GLGA_THEEB3.008e-3238.39Glycogen synthase OS=Thermosynechococcus elongatus... [more]
GLGA_BORPA5.131e-3237.96Glycogen synthase OS=Bordetella parapertussis GN=g... [more]
GLGA_PROMP6.701e-3238.28Glycogen synthase OS=Prochlorococcus marinus subsp... [more]
GLGA2_METCA6.701e-3238.12Glycogen synthase 2 OS=Methylococcus capsulatus GN... [more]
GLGA_RALSO8.752e-3235.22Glycogen synthase OS=Ralstonia solanacearum GN=glg... [more]
GLGA_DEIRA8.752e-3242.20Glycogen synthase OS=Deinococcus radiodurans GN=gl... [more]
GLGA2_SYNJB8.752e-3239.62Glycogen synthase 2 OS=Synechococcus sp. GN=glgA2 ... [more]
GLGA_RHILW1.493e-3137.44Glycogen synthase OS=Rhizobium leguminosarum bv. t... [more]
GLGA_RHIEC1.493e-3138.76Glycogen synthase OS=Rhizobium etli (strain CFN 42... [more]

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Properties
Property NameValue
Genbank descriptionC31003E03EF AbioticL1 Citrus clementina cDNA clone C31003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868685 ID=FC868685; Name=FC868685; organism=Citrus clementina; type=EST; length=704bp
ACCTGTGAGAGGTTCAAAATCAACTGGATGAAAGCTGGAATATTAGAATC
AGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTG
GTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATT
AAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGA
CAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGC
CTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGA
AATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTC
AGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGA
TAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAG
TTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATAT
TCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAA
GCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGA
ACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGA
AGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTG
TGGA
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