FC868685

Overview
NameFC868685
Unique NameFC868685
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_VARPS (Glycogen synthase OS=Variovorax paradoxus (strain S110) GN=glgA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.547e-31
Identity = 74/214 (34.58%), Postives = 118/214 (55.14%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDA--STVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            ++++MK G+  +D + TVSP YA+E+ + E +G  LD ++R  G  + GI+N +D + WNP TD  +   Y       M  K   K  LQ ++GL    + P+   + RL EQKG  ++   +   + E  Q+ +LG+G+  +E+   +     P        +N  LAH +  G D  L+PS FEPCGL Q++ ++YG++P+V   GGL DTV
Sbjct:  206 QVSFMKGGLYFADRLTTVSPTYAREIQTPE-QGFGLDGLLRLRGGVLTGILNAVDDEVWNPATDSALVQGYHTPDGRHMAGKARCKAVLQHQLGLAERPDAPLFILVSRLTEQKGLHLVLGGLDTLLAEGGQLALLGSGEAGLEQAFRERAAAAPRAVSVTIGYNETLAHQLFGGGDVTLVPSLFEPCGLTQMYGLKYGSLPLVRRVGGLADTV 418          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_AGRRK (Glycogen synthase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=glgA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.547e-31
Identity = 83/211 (39.34%), Postives = 120/211 (56.87%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            I ++K G+  +  + TVSP YA E+++ E  G+ L+ +I  R   + GIVNG+D   WNP TD  I   Y AST+ D     K+ ++   GL  D   P+   + RL  QKG D+LA+     +    ++ +LG G   +E  L      +  +    A +N  ++H++ AG D I+IPSRFEPCGL QL+ +RYG VPIVA TGGL DT+
Sbjct:  197 IGFLKGGLQTAHALTTVSPSYAGEILTPEF-GMGLEGVIASRAASLHGIVNGIDDGIWNPETDPMIARTYGASTLKDRAINRKQVVE-HFGLDDDDG-PIFCVVSRLTWQKGMDLLASISSEIVAMGGKLAILGAGDAALEGALFAAAGRHRGRVGVSAGYNEAMSHLMQAGCDAIIIPSRFEPCGLTQLYGLRYGCVPIVARTGGLNDTI 404          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_CHLAB (Glycogen synthase OS=Chlamydophila abortus GN=glgA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.326e-31
Identity = 84/223 (37.67%), Postives = 123/223 (55.16%), Query Frame = 1
Query:   28 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII-RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL------KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG-KKPMEKQLEQLE--ILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGF 666
            +K  +  SD + TVSP YAQ++++        D I+ R+    GI+NG+D   WNP TD  + V+Y    +     L       K AL  ++GL ++ + P++  I R+ EQKG + + AAI H ++ +  +++ GT   +  ++Q   L+  +      R +  +N PL  +I   AD I IPS FEPCGL QL  MRYGTVP+V STGGL DTV  G  GF
Sbjct:  196 LKGALYCSDYITTVSPSYAQDILNDYSDYEIHDAIMSRRHVFCGILNGIDENIWNPETDPALAVRYGTHLLKSPDVLFTKKEENKIALYEKLGLSLEYS-PLMCVISRIVEQKGPEFMKAAILHAMENSYALVIAGTCYDQETQRQFTNLQESLTTSPNIRIILDYNDPLVRLIYGAADMICIPSHFEPCGLTQLIGMRYGTVPLVRSTGGLADTVAAGVNGF 417          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_RHITR (Glycogen synthase OS=Rhizobium tropici GN=glgA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31
Identity = 78/211 (36.97%), Postives = 120/211 (56.87%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            + ++K G+  +  + TVSP YA+E+++ E  G+ L+ +I  +   + GIVNG+D   WNP TD  I   Y A+T+ + + + +  +    GL  D   P+   + RL  QKG DILA      +    ++ +LG G   +E  L      +  +   V + N P++H++ AG D I+IPSRFEPCGL QL+ +R G +PIVA TGGL DT+
Sbjct:  197 VGFLKGGLQTAHALTTVSPSYAEEILTPEF-GMGLEGVIASKAYNLYGIVNGIDADIWNPATDPMIAQTYSAATLKE-RAINRHRVVEHFGLEEDDG-PIFCVVSRLTWQKGMDILAEVASEVVHMGGKLAILGAGDAALEGALFAAAGRHRGRVGVVGRHNEPMSHLMQAGCDAIIIPSRFEPCGLTQLYGLRSGCLPIVARTGGLNDTI 404          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_RHIE6 (Glycogen synthase OS=Rhizobium etli (strain CIAT 652) GN=glgA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31
Identity = 79/209 (37.80%), Postives = 119/209 (56.94%), Query Frame = 1
Query:   25 WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            ++K G+  +  + TVSP YA E+++ E  G+ L+ +I  R   + GIVNG+D   WNP TD  +   Y  +T+ +     +    AE     + + P+   I RL  QKG D++A      +    +++VLG+G+  +E  L      +P +      +N P++H++ AG D I+IPSRFEPCGL QL+ +RYG VPIVA TGGL DTV
Sbjct:  199 FLKGGLQTAHAITTVSPTYADEILTPEF-GMGLEGVIATRIDNLHGIVNGIDTDIWNPATDPVVHTHYGPTTLKNRDENRRSI--AEFFHLDNDDAPIFCVISRLTWQKGMDLVANVADEIVAMGGKLVVLGSGEAALEGALLASASRHPGRIGVSIGYNEPMSHLMQAGCDAIIIPSRFEPCGLTQLYGLRYGCVPIVARTGGLNDTV 404          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_CHLMU (Glycogen synthase OS=Chlamydia muridarum GN=glgA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.677e-31
Identity = 85/228 (37.28%), Postives = 125/228 (54.82%), Query Frame = 1
Query:   28 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKY------DASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT---GKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS 678
            +K  +  SD V TVSP YA+E++  +    E+ + I  R+  +KGI+NG+D    +P TD ++   Y      D     +AK   K+AL   +GL +D++ P +  I R+ EQKG + +  AI H ++    +I++GT   G+   E    Q  +      R +  ++  LA  I A AD I IPS FEPCGL Q+  MRYGTVP+V +TGGL DTV +G  GF   +
Sbjct:  197 LKGALYCSDFVTTVSPTYAKEILQ-DYSDYEIHDAITARQHHLKGILNGIDYTILDPETDPHLAKNYSKVLFEDPKAFFEAKAENKKALYETLGLSLDKS-PCMCIISRIAEQKGPEFMKQAILHALENAYTLIIIGTCYGGQIHKEFSNLQESLADSPNVRILLTYSDVLARQIFAAADMICIPSMFEPCGLTQMIGMRYGTVPVVRATGGLADTVTDGVNGFSFSN 422          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA1_ANAVT (Glycogen synthase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=glgA1 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.156e-30
Identity = 83/216 (38.43%), Postives = 122/216 (56.48%), Query Frame = 1
Query:   13 FKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGV---AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            F +N+MK GI+ S+ V TVSP++A E     D G  L + +   K    GI+NG+D   WNP  D+YI   Y+     + K   K+AL+  + L    + P+I +IGRL+ QKG  ++  AI H + +  Q ++LG+  +       + E  +      V     FN  L+H+I AGAD I++PS +EPCGL Q+  ++YGTVPIV   GGLV+TV
Sbjct:  203 FALNYMKGGIVYSNAVTTVSPNHALE-AQYTDVGCGLGHTLYQHKDKFSGILNGIDYDFWNPEIDRYIPYNYNQED-FEQKLYNKKALRERLLLQA-ADKPIIAYIGRLDNQKGVHLVHHAIYHSLNKGAQFVLLGSATEAGINAHFRHEKQFLNNNPDVHLELGFNEELSHLIYAGADMIVVPSNYEPCGLTQMIGLKYGTVPIVRGVGGLVNTV 415          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_RHOS5 (Glycogen synthase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=glgA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30
Identity = 76/208 (36.54%), Postives = 120/208 (57.69%), Query Frame = 1
Query:   28 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            +KAG++ +D + TVSP YA EL+  E  G+ L  +I  R   + GI+NG+D   W+P  ++     Y A + + AK   +  L     L V   + ++  + RL  QKG D++   +P FI     + VLGTG   +E  + +LE+ +  +      ++  L+H++ AG D +L+PSRFEPCGL Q++ +RYG +P+VA TGGL DT+
Sbjct:  205 LKAGLVTADHITTVSPTYACELMRPEF-GMGLQGVIAARAGQVSGILNGVDTDIWSPEAEER---PYTARS-LKAKAENRAVLSGAFKLDVPGPLAIL--VSRLTYQKGIDLIPEVLPDFIAAGGGLAVLGTGDAALEGAMRELEVRFSGRVGVRIGYDEGLSHLMFAGGDAVLVPSRFEPCGLTQMYGLRYGAIPVVALTGGLADTI 405          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_PSEPF (Glycogen synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=glgA PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.272e-30
Identity = 79/229 (34.50%), Postives = 128/229 (55.90%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR-KTG---IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 690
            K++++KAG+  S  + TVS  YAQE+ +  D G  LD  +  KT    + GI NG+D + W+  TD ++   + A    + K +    ++   GL  D   P+   + RL  QKG D+  A   + ++   QI ++G G+   E+ + +L + +P +      FN   A  + AG+DF+L+PSR+EPCGL Q++A R+G++P+  +TGGL DT+E G TGF     + D
Sbjct:  205 KMSFLKAGMAYSSHITTVSATYAQEITT-PDFGCGLDGFLAAKTQQGLLSGIPNGID-ESWDAATDPHLFAPF-AIGDWEGKAINAAHVRELFGLK-DSEGPLFAVVSRLVYQKGLDLTEAVSEYIVQNGGQIAIIGRGEPEEEQAMRELALRFPGQIGVRIGFNETDARRMFAGSDFLLMPSRYEPCGLSQMYAQRFGSLPVARNTGGLADTIENGVTGFLFNESTAD 429          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_CHLPN (Glycogen synthase OS=Chlamydia pneumoniae GN=glgA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.192e-30
Identity = 82/223 (36.77%), Postives = 118/223 (52.91%), Query Frame = 1
Query:   28 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGI-KGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL------KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKP-MEKQLEQLE--ILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGF 666
            MK  +  SD + TVS  Y QE+++        D I+ +  +  GI+NG+D   WNP TD  + V+YDAS + +   L       +  L  ++G+  D   P+I  I R+ E+KG + +   I H ++ +   I++GT +   +  +   L+  +      R +  FN PLA +  A AD I IPS  E CGL QL AMRYGTVP+V  TGGL DTV  G  GF
Sbjct:  196 MKGALYCSDYITTVSLTYVQEIINDYSDYELHDAILARNSVFSGIINGIDEDVWNPKTDPALAVQYDASLLSEPDVLFTKKEENRAVLYEKLGISSDY-FPLICVISRIVEEKGPEFMKEIILHAMEHSYAFILIGTSQNEVLLNEFRNLQDCLASSPNIRLILDFNDPLARLTYAAADMICIPSHREACGLTQLIAMRYGTVPLVRKTGGLADTVIPGVNGF 417          
The following BLAST results are available for this feature:
BLAST of FC868685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_VARPS2.547e-3134.58Glycogen synthase OS=Variovorax paradoxus (strain ... [more]
GLGA_AGRRK2.547e-3139.34Glycogen synthase OS=Agrobacterium radiobacter (st... [more]
GLGA_CHLAB3.326e-3137.67Glycogen synthase OS=Chlamydophila abortus GN=glgA... [more]
GLGA_RHITR4.344e-3136.97Glycogen synthase OS=Rhizobium tropici GN=glgA PE=... [more]
GLGA_RHIE64.344e-3137.80Glycogen synthase OS=Rhizobium etli (strain CIAT 6... [more]
GLGA_CHLMU9.677e-3137.28Glycogen synthase OS=Chlamydia muridarum GN=glgA P... [more]
GLGA1_ANAVT2.156e-3038.43Glycogen synthase 1 OS=Anabaena variabilis (strain... [more]
GLGA_RHOS54.803e-3036.54Glycogen synthase OS=Rhodobacter sphaeroides (stra... [more]
GLGA_PSEPF6.272e-3034.50Glycogen synthase OS=Pseudomonas fluorescens (stra... [more]
GLGA_CHLPN8.192e-3036.77Glycogen synthase OS=Chlamydia pneumoniae GN=glgA ... [more]

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Properties
Property NameValue
Genbank descriptionC31003E03EF AbioticL1 Citrus clementina cDNA clone C31003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868685 ID=FC868685; Name=FC868685; organism=Citrus clementina; type=EST; length=704bp
ACCTGTGAGAGGTTCAAAATCAACTGGATGAAAGCTGGAATATTAGAATC
AGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTG
GTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATT
AAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGA
CAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGC
CTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGA
AATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTC
AGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGA
TAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAG
TTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATAT
TCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAA
GCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGA
ACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGA
AGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTG
TGGA
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