FC868685

Overview
NameFC868685
Unique NameFC868685
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_PARDP (Glycogen synthase OS=Paracoccus denitrificans (strain Pd 1222) GN=glgA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.383e-29
Identity = 80/212 (37.74%), Postives = 122/212 (57.55%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            +I+ +KAGI+ +D V TVSP YA+EL++ E  G+ ++ ++  R     GI+NG+D+  W P                  K   + AL+ E GLP + + P+   + RL  QKG D+L  A+P  ++   Q+ VLG+G   +E    +    +   A  +  ++  L+  +IAG D IL+PSRFEPCGL QL+ +R+GT+P+VA TGGL DTV
Sbjct:  197 RISALKAGIVFADKVSTVSPTYAEELMTPEF-GMGMEGVLADRAGDFTGILNGIDLDAWKP-----------PYATPQGKAPHRAALRKEFGLP-ETDGPLCVVVSRLTGQKGLDLLIEALPALLENGGQLAVLGSGDPGLEAAFAKAAARHAGVALRLG-YDEALSRRMIAGGDAILVPSRFEPCGLTQLYGLRFGTLPLVALTGGLADTV 394          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_CHLTA (Glycogen synthase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=glgA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.383e-29
Identity = 85/224 (37.95%), Postives = 121/224 (54.02%), Query Frame = 1
Query:   28 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDA------STVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT--GKKPMEKQLEQLEILYPE-KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGF 666
            +K  +  SD V TVSP YA+E++  +    E+ + I  R+  ++GI+NG+D   W P TD  +   Y        S   +AK   K+AL   +GL ++ + P +  I R+ EQKG   +  AI H ++    +I++GT  G +  E+     E L      R +  ++  LA  I A AD I IPS FEPCGL Q+  MRYGTVP+V +TGGL DTV  G  GF
Sbjct:  197 LKGALYCSDFVTTVSPTYAKEILE-DYSDYEIHDAITARQHHLRGILNGIDTTIWGPETDPNLAKNYTKELFETPSIFFEAKAKNKKALYEILGLSLEHS-PCVCIISRIAEQKGPHFMKQAILHALENAYTLIIIGTCYGNQLHEEFANLQESLANSPNVRILLTYSDVLARQIFAAADMICIPSMFEPCGLTQMIGMRYGTVPLVRATGGLADTVANGINGF 418          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_CHLFF (Glycogen synthase OS=Chlamydophila felis (strain Fe/C-56) GN=glgA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.113e-29
Identity = 79/224 (35.27%), Postives = 122/224 (54.46%), Query Frame = 1
Query:   28 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII-RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL-------KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG-KKPMEKQLEQLE--ILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGF 666
            +K  +  SD + TVSP YAQ+++         D I+ R+   +GI+NG+D   WNP TD  +   Y    ++D+  +L       K AL  ++G+  + + P++  I R+ EQKG + + AAI H ++     I++G    +  +++   L+  +      R +  +N PLA ++   AD + IPS FEPCGL QL  MRYGTVP+  +TGGL DTV  G  GF
Sbjct:  196 LKGALYCSDYITTVSPTYAQDILHDYSDYEMHDAIMARRHVFRGILNGIDDNIWNPETDSSLVANY-GKNLLDSPEILFTKKEENKVALYEKLGMSPEHS-PLLCIISRIVEQKGPEFMKAAILHAMENGYAFILVGKCYDEETQRKFSNLQESLTMSPNVRIILDYNEPLARLLYGAADMLCIPSHFEPCGLTQLIGMRYGTVPLARATGGLADTVTPGINGF 417          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA2_SYNY3 (Probable glycogen synthase 2 OS=Synechocystis sp. (strain PCC 6803) GN=glgA2 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.935e-29
Identity = 78/213 (36.62%), Postives = 117/213 (54.93%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQEL-VSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQL---EQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            IN+MK GI+ S+ V TVSPH+A E   S    G+     I +    GI+NG+D + WNP  D  +   +   T  D K   K+AL+  + L  D   P++ FIGRL+ QKG  ++  +I + + +  Q ++LG+  +P   +    E+  +           F+  LAH+I   AD I++PS +EPCGL Q+  +RYG VP+V   GGLV+TV
Sbjct:  205 INFMKGGIVYSNYVNTVSPHHAWEARFSDISCGLGHTLEIHQQKFGGILNGLDYEVWNPEIDPLLASNFSVKTFGD-KAKNKQALRERLLLETDDKKPMLCFIGRLDGQKGVHLVHHSIYYALSQGAQFVLLGSATEPNLSKWFWHEKQHLNDNPNVHLELGFDEELAHLIYGAADIIVVPSNYEPCGLTQMIGLRYGAVPVVRGVGGLVNTV 416          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_PSEU2 (Glycogen synthase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=glgA PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.545e-28
Identity = 73/228 (32.02%), Postives = 127/228 (55.70%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 690
            +++++KAG+  +  + TVS  YA+E+ + E   G+E  L +   K  + GI NG+D + W+  TD+++ + + A      K +  + ++    L      P+   + RL  QKG D+      H +    QI ++G G+   E+ + +L   +P +      FN   A  + AG+DF+L+PSR+EPCGL Q++A R+G++P+  +TGGL DT+E+G TGF     +V+
Sbjct:  203 QLSFIKAGMAFASHITTVSATYAREITTPEFGCGLEGFLQSKANKGQLSGIPNGID-ESWDAATDEHL-ICHFAPNEWTRKEINADYVRELFELDASTG-PLFAVVSRLVYQKGLDLTIGVAEHIVNNGGQIAIIGRGEPEEEEAMRELAARFPGRVGVRIGFNETDARRMFAGSDFLLMPSRYEPCGLSQMYAQRFGSLPVARNTGGLADTIEDGVTGFLFNESTVE 427          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_PSESM (Glycogen synthase OS=Pseudomonas syringae pv. tomato GN=glgA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.018e-28
Identity = 73/229 (31.88%), Postives = 127/229 (55.46%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR----KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 690
            K++++KAG+  ++ + TVS  YA+E+ + E  G  L+  ++    K  + GI NG+D + W+  TD+++ + + A      K +  + ++    L      P+   + RL  QKG D+      H +    QI ++G G+   E  + +L   +P +      FN   A  + AG+DF+L+PSR+EPCGL Q++A R+G++P+  +TGGL DT+E+G TGF     +V+
Sbjct:  203 KLSFIKAGMAFANHITTVSATYAREITTPEF-GCGLEGFLQSKADKGQLSGIPNGID-ESWDAATDEHL-ICHFAPNEWTRKEINADYVRELFELDASSG-PLYAVVSRLVYQKGLDLTIGVAEHIVNNGGQIAIIGRGEPEEEDAMRELAARFPGRIGVRIGFNETDARRMFAGSDFLLMPSRYEPCGLSQMYAQRFGSLPVARNTGGLADTIEDGVTGFLFNESTVE 427          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_PSE14 (Glycogen synthase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=glgA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28
Identity = 73/220 (33.18%), Postives = 123/220 (55.91%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGF 666
            K++++KAG+  +  + TVS  YA+E+ + E   G+E  L +   K  + GI NG+D + W+  TD+++ + + A      K +  + ++    L      P+   + RL  QKG D+      H +    QI ++G G+   E  + +L   +P +      FN   A  + AG+DF+L+PSR+EPCGL Q++A R+G++P+  +TGGL DT+E+G TGF
Sbjct:  203 KLSFIKAGMAFASHITTVSATYAREITTPEFGCGLEGFLQSKANKGQLSGIPNGID-ESWDAATDEHL-ICHFAPNEWTRKEINADYVRELFELDASTG-PLYAVVSRLVYQKGLDLTIGVAEHIVNNGGQIAIIGRGEPEEEDAMRELAARFPGRIGVRIGFNETDARRMFAGSDFLLMPSRYEPCGLSQMYAQRFGSLPVARNTGGLADTIEDGVTGF 419          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_PSEF5 (Glycogen synthase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=glgA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.708e-27
Identity = 73/221 (33.03%), Postives = 117/221 (52.94%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG----IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGF 666
            K++++KAG+  +  + TVS  YAQE+ +    G  LD  +        + GI NG+D + W+  TD ++   +      D K      ++   GL      P+   + RL  QKG D+  A     ++   QI ++G G+   E+ +  L   +P +      FN   A  + AG+DF+L+PSR+EPCGL Q++A R+G++P+  +TGGL DT+E G TGF
Sbjct:  208 KLSFLKAGMAYASHITTVSATYAQEITTPAF-GCGLDGFLASKTQQGLLSGIPNGID-ESWDAATDAHLLTPFSIGD-WDGKAANAAHVRQMFGLDASSG-PLFAVVSRLVYQKGLDLTEAVAEFIVQSGGQIAIIGRGEPEEEQSMRALARRFPGRIGVHIGFNETDARRMFAGSDFLLMPSRYEPCGLSQMYAQRFGSLPVARNTGGLADTIENGVTGF 424          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_PSEAE (Glycogen synthase OS=Pseudomonas aeruginosa GN=glgA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.446e-26
Identity = 74/221 (33.48%), Postives = 120/221 (54.30%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR----KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGF 666
            +++++KAGI  +  + TVS  YAQE+ + E  G  L  I++    K  + GIVNG+D   W P  D ++   + A      K      ++   GL   +  P+   + RL +QKG D+        ++   +++ +G G+  +EK + +L   +P +      F+   A  I AG+DF+L+PSR+EPCGL QL+A  +G++PI   TGGL DT+ +G TGF
Sbjct:  229 RLSFLKAGIAHAHHITTVSETYAQEITTPE-YGCGLHGILKYKVEKRQLSGIVNGID-DSWQPHCDPHLVACFSARQ-WAGKRANTRYVEERFGLEPGKG-PLFAVVSRLVQQKGIDLTLEISDALLQAGGRLVSIGRGEPNLEKAMLELARRHPGQVGVHIGFDETEARRIYAGSDFLLMPSRYEPCGLSQLYAQCFGSLPIARCTGGLADTIVDGVTGF 445          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_PSEA7 (Glycogen synthase OS=Pseudomonas aeruginosa (strain PA7) GN=glgA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.446e-26
Identity = 74/221 (33.48%), Postives = 119/221 (53.85%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR----KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGF 666
            +++++KAGI  +  + TVS  YAQE+ + E  G  L  I++    K  + GIVNG+D   W P  D ++   + A      K      ++   GL   +  P+   + RL +QKG D+        ++   +++ +G G+  +EK +  L   +P +      F+   A  I AG+DF+L+PSR+EPCGL QL+A  +G++PI   TGGL DT+ +G TGF
Sbjct:  229 RLSFLKAGIAHAHHITTVSETYAQEITTPE-YGCGLHGILKCKVEKRQLSGIVNGID-DSWQPHCDPHLVAGFSARQ-WAGKRANTRYVEERFGLEPGKG-PLFAVVSRLVQQKGIDLTLEISDALLQAGGRLVSIGRGEPSLEKAMLDLSRRHPGQVGVHIGFDETDARRIYAGSDFLLMPSRYEPCGLSQLYAQCFGSLPIARCTGGLADTIVDGVTGF 445          
The following BLAST results are available for this feature:
BLAST of FC868685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_PARDP2.383e-2937.74Glycogen synthase OS=Paracoccus denitrificans (str... [more]
GLGA_CHLTA2.383e-2937.95Glycogen synthase OS=Chlamydia trachomatis (strain... [more]
GLGA_CHLFF3.113e-2935.27Glycogen synthase OS=Chlamydophila felis (strain F... [more]
GLGA2_SYNY36.935e-2936.62Probable glycogen synthase 2 OS=Synechocystis sp. ... [more]
GLGA_PSEU21.545e-2832.02Glycogen synthase OS=Pseudomonas syringae pv. syri... [more]
GLGA_PSESM2.018e-2831.88Glycogen synthase OS=Pseudomonas syringae pv. toma... [more]
GLGA_PSE143.442e-2833.18Glycogen synthase OS=Pseudomonas syringae pv. phas... [more]
GLGA_PSEF51.708e-2733.03Glycogen synthase OS=Pseudomonas fluorescens (stra... [more]
GLGA_PSEAE1.446e-2633.48Glycogen synthase OS=Pseudomonas aeruginosa GN=glg... [more]
GLGA_PSEA71.446e-2633.48Glycogen synthase OS=Pseudomonas aeruginosa (strai... [more]

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Properties
Property NameValue
Genbank descriptionC31003E03EF AbioticL1 Citrus clementina cDNA clone C31003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868685 ID=FC868685; Name=FC868685; organism=Citrus clementina; type=EST; length=704bp
ACCTGTGAGAGGTTCAAAATCAACTGGATGAAAGCTGGAATATTAGAATC
AGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTG
GTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATT
AAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGA
CAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGC
CTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGA
AATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTC
AGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGA
TAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAG
TTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATAT
TCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAA
GCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGA
ACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGA
AGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTG
TGGA
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