FC868685

Overview
NameFC868685
Unique NameFC868685
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1007..1710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_METJA (Probable glycogen synthase OS=Methanocaldococcus jannaschii GN=glgA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22
Identity = 73/252 (28.97%), Postives = 124/252 (49.21%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPL-----------------TDKYIGVKYDASTVMDAKPLLK-----------------------EALQAEVGLPVDRNI--PVIGFIGRLEEQKGSDILAAAIPHFI-KENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            + +++ GI  +D V TVSP +A+E+ +       +   +      GI+NG+D+ E++P+                    YI   Y A    + KP +K                        A   EV   VD +I  P+IGF+GR   QKG + +  AIP  + K +++ + L  G + +E++L+ L   +  +   +  +++PL+ ++ AG+D+I++PS +EPCGL+Q+ AM Y T  I   TGGL DT+
Sbjct:  165 MTFLELGIKYADAVNTVSPSHAEEIKNYP----YIKKYLNNKPFCGILNGIDIDEYDPMKIIERMCNLSNNKLDPRNYAYIS-PYSAEDSHNIKPKIKYSWFYRGGVYEYVEDWNKIDKGISATDVEVHGGVDGDIETPLIGFVGRATHQKGFNTMFEAIPELLEKHDIRFVFLTKGDRDIEERLKNLANEHDGRILALIGYSLPLSSLVFAGSDWIIMPSYWEPCGLVQMEAMAYCTPVIATETGGLKDTI 411          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: MOK12_SCHPO (Cell wall alpha-1,3-glucan synthase mok12 OS=Schizosaccharomyces pombe GN=mok12 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 59/161 (36.65%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  172 DVQEWNPLTDKYIGVKYDASTVMDAK-PLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE-NVQIIVLGT-----GKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGL 633
            D++  N LTD  + V +    V++AK  LLK+  Q    L VD +  ++ F+GR   QKG D++A   P  + E NVQ+I +G      G+   EK LEQ+   +P +      F   +   + AG DF LIPSR EP GL+ +   R G + I + TGGL
Sbjct: 1423 DLKLLNHLTDDPVDVDF----VLEAKRKLLKKQTQEWANLDVDPSAQLLVFVGRWSHQKGIDLIADLAPKLLTEHNVQLITIGPVIDLHGQFAAEK-LEQIAKRFPTRVLCKPVFTA-VPPFLFAGTDFALIPSRDEPFGLVAVEFGRKGVLCIGSRTGGL 1577          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: MOK14_SCHPO (Cell wall alpha-1,3-glucan synthase mok14 OS=Schizosaccharomyces pombe GN=mok14 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 54/157 (34.39%), Postives = 77/157 (49.04%), Query Frame = 1
Query:  259 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE-NVQIIVLGT-----GKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVD------TVEEGFTGFQMGSFSVDC 693
            K   Q   GL +D    ++ F+GR   QKG DILA   P  +++ N+Q+IV+G      GK   EK +  +E  YP +     +F + L   I  GADF LIPSR EP GL+ +   R G + I +  GGL +      +VE   T + +      C
Sbjct:  532 KRKAQEWAGLTIDDEADLLVFVGRWSVQKGIDILADLAPTLLEKFNIQLIVVGPLIDLYGKFAAEKFMYIME-RYPGRVFSKPEF-VHLPPFIFEGADFALIPSRDEPFGLVAVEFGRRGAICIGSRVGGLGEMPGWWYSVESSSTAYLLKQLEKSC 686          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: AGS1_SCHPO (Cell wall alpha-1,3-glucan synthase ags1 OS=Schizosaccharomyces pombe GN=ags1 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 62/184 (33.70%), Postives = 86/184 (46.74%), Query Frame = 1
Query:  196 TDKYIGVKYDASTVMD-----AKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE-NVQIIVLGT-----GKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVD------TVEEGFTGFQMGSFSVDCE 696
            TD+ +  K  A T +D     +K   K   Q   GL V+    ++ F+GR   QKG D++A   P  ++   VQ+I +G      GK   EK L+ L+  YP +     KF   L   I +GADF LIPSR EP GL+ +   R G + I A  GGL        +VE   T   +  F   C+
Sbjct: 1396 TDEIVDDKAVAITDIDPDMEKSKVEHKRLAQEWAGLEVNEKYDLLVFVGRWSSQKGIDLIADIAPSLLESYKVQLICVGPIIDLYGKFAAEK-LDVLQKKYPTRVFSQPKFT-QLPPYIFSGADFALIPSRDEPFGLVAVEFGRKGALGIGARVGGLGQMPGWWYSVESSATPHLLKQFEQACQ 1577          
The following BLAST results are available for this feature:
BLAST of FC868685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_METJA3.686e-2228.97Probable glycogen synthase OS=Methanocaldococcus j... [more]
MOK12_SCHPO2.395e-1336.65Cell wall alpha-1,3-glucan synthase mok12 OS=Schiz... [more]
MOK14_SCHPO5.898e-1234.39Cell wall alpha-1,3-glucan synthase mok14 OS=Schiz... [more]
AGS1_SCHPO7.703e-1233.70Cell wall alpha-1,3-glucan synthase ags1 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionC31003E03EF AbioticL1 Citrus clementina cDNA clone C31003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868685 ID=FC868685; Name=FC868685; organism=Citrus clementina; type=EST; length=704bp
ACCTGTGAGAGGTTCAAAATCAACTGGATGAAAGCTGGAATATTAGAATC
AGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTG
GTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATT
AAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGA
CAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGC
CTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGA
AATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTC
AGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGA
TAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAG
TTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATAT
TCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAA
GCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGA
ACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGA
AGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTG
TGGA
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