FC868685

Overview
NameFC868685
Unique NameFC868685
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_ACICJ (Glycogen synthase OS=Acidiphilium cryptum (strain JF-5) GN=glgA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.438e-43
Identity = 95/233 (40.77%), Postives = 137/233 (58.80%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG---------FTGFQMGSFS 684
            I ++KAG+  +D + TVSP YA E+ + +D G+ LD ++RK G  + GI+NG+D   WNP TD+++  +YD + +  A+ + K A+QA +GL  D    + G + RL  QKG D++  A+P       Q+ VLGTG+  +E  L +     P +   +  F   L+H+I  GAD IL+PSRFEPCGL QL A RYG +P+V+  GGLVDTV +           TG Q G  S
Sbjct:  197 IGFLKAGLQFADAITTVSPRYATEIAT-QDGGMGLDGLLRKRGSAVHGILNGLDTATWNPATDEHLAARYDVANLA-ARAVNKRAVQARMGLAPDPRALLFGVVSRLAGQKGIDLIIEALPVLDALGAQLAVLGTGETGIEASLREAVAARPGRVAAIIGFEESLSHLIQGGADAILVPSRFEPCGLTQLAAQRYGAIPVVSLVGGLVDTVIDANPVAISAGVATGIQFGPVS 427          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_STRP4 (Glycogen synthase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=glgA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.439e-42
Identity = 96/230 (41.74%), Postives = 133/230 (57.83%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFS 684
            +NWMKAGIL ++ V TVSP YA E+++ +  G  LD I++     + GIVNG+D   +NP TD  +   ++    +  K   K  LQ  VGLPV    P++G + RL  QKG D++  ++ H ++E+VQI++LGTG    E        +YP+K      F++ LA  I A  D  L+PSRFEPCGL Q+ AMRYGT+P+V   GGL DTV      E   TGF   + S
Sbjct:  198 LNWMKAGILYANRVSTVSPSYAHEIMTSQF-GCNLDQILKMESGKVSGIVNGIDADLYNPQTDALLDYHFNQED-LSGKAKNKAKLQERVGLPVRXXXPLVGIVSRLTRQKGFDVVVESLHHILQEDVQIVLLGTGDPAFEGAFSWFAQIYPDKLSTNITFDVKLAQEIYAACDLFLMPSRFEPCGLSQMMAMRYGTLPLVHEVGGLRDTVRAFNPIEGSGTGFSFDNLS 425          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_CLOPE (Glycogen synthase OS=Clostridium perfringens GN=glgA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.439e-42
Identity = 98/223 (43.95%), Postives = 135/223 (60.54%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMG 675
            +++MK  I  SD +LTVS  YA+E+ +    G  LD ++R+ G  +KGIVNG+D  E+NP  D  I   +   T+ D K L K ALQ E+GLP++ +IP+I  + RL  QKG D++       ++ NVQ+++LGTG    E   + L+ LYP K     KF+  LAH I A +D  L+PS FEPCGL QL A+RYG +PIV  TGGL DT+     +TG   G
Sbjct:  204 MSFMKGAINYSDRILTVSETYAKEIKTPYF-GENLDGLLRERGYALKGIVNGIDYDEFNPSKDSLIAKNFSVKTIED-KVLNKLALQKELGLPINPDIPMISIVSRLTNQKGCDLIVNIANRLLQRNVQLVILGTGDYNYENHFKGLQELYPTKVSANIKFDNGLAHRIYASSDIFLMPSLFEPCGLGQLIALRYGAIPIVRETGGLKDTIHSYNKYTGIGNG 424          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_ANOFW (Glycogen synthase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=glgA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.439e-42
Identity = 96/231 (41.56%), Postives = 142/231 (61.47%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE-------EGFTGFQMGSFS 684
            +++MK  ++ + ++ TVSP Y +E+ +    G  LD ++R   + + GI+NG+D + +NP  D YI V YD +T+   K + K ALQ    LP + ++PVI  + RL +QKG D++       I E+VQ+I+LGTG+   E+  + + + YP++ R    F+  LAH I AGAD  L+PS+FEPCGL Q+ AMRYG VPIV  TGGL DTV+       EG TGF   +F+
Sbjct:  198 VSFMKGALVSAHLITTVSPTYKEEIQTPY-YGERLDGLLRARSSHLVGILNGIDDEIYNPKKDPYIAVPYDVTTIA-RKSINKRALQQHFSLPSEEDVPVIAIVSRLTKQKGLDLVKCVFHEIIAEHVQMIILGTGEWEFEQFFQDMTMTYPDRVRVYIGFSEQLAHQIYAGADMFLMPSKFEPCGLGQMIAMRYGAVPIVRETGGLNDTVQSFNELTKEG-TGFTFKNFN 425          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_AZOSE (Glycogen synthase OS=Azoarcus sp. (strain EbN1) GN=glgA PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.206e-42
Identity = 95/227 (41.85%), Postives = 139/227 (61.23%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVD 690
            K++++KAG+  +D ++ VSP YA+E+ + E  G  +  ++  R   + GI+NG+D+  WNP TD ++   YDA T+ D  P  K ALQAE+GL  D +  ++G + RL +QKG D++  A+P  +   VQ+ +LG G    E+   Q     P++   V  F+  LAH I AGAD  ++PSRFEPCGL Q+++ RYGT PIV +TGGLVD+V         G FSVD
Sbjct:  208 KLSFLKAGLYYADRIVAVSPTYAREIRT-EAHGCGMQGLLETRANRLAGILNGIDMDAWNPRTDPHLDTNYDADTLEDKAPN-KRALQAELGLAADDDALLLGMVTRLTDQKGIDLVLDALPELLARPVQLALLGGGDARFEQAWRQRAAARPDRIAAVIGFDERLAHRIEAGADAFVMPSRFEPCGLNQMYSQRYGTPPIVRATGGLVDSV---------GDFSVD 423          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_MYCMO (Glycogen synthase OS=Mycoplasma mobile GN=glgA PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.188e-42
Identity = 91/211 (43.13%), Postives = 136/211 (64.45%), Query Frame = 1
Query:   22 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRK--TGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKEN-VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            N+MKAGI+ SD+V TVS  Y +E +    +G+ L++++ K  + ++GI+NG+D   +NP  DKYI  KYD S   +AK + K ALQ E+ L  ++ I +IG I RL  QKG D++  ++ + +K+N +Q +VLGTG    E  L+     YP   + + KF+  L+H + AG D  LIPS FEPCGL QL +++YG +PI  +TGGL+DT+
Sbjct:  199 NFMKAGIISSDIVTTVSETYKEE-IKQPMQGMGLESVLNKYNSKLRGIINGLDYDIFNPSIDKYIEAKYDVSNYKEAKLINKIALQKELNLEQNKKIFLIGMISRLANQKGIDLVLNSLWNIVKDNDIQFVVLGTGDVNYESNLKSFGNKYPRNFKFINKFSDELSHKLYAGLDAFLIPSLFEPCGLTQLISLKYGCIPIARATGGLIDTI 408          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_STRS7 (Glycogen synthase OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=glgA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.329e-42
Identity = 93/230 (40.43%), Postives = 130/230 (56.52%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFS 684
            +NWMKA +L +D V TVSP YA E+ +    G  LD ++R     + GIVNG+D   +NP  D ++   + A   +  K   K+ LQ  +GLPV  ++P+IG + RL +QKG  ++   + H ++++VQ+++LGTG    E         YPEK      F++PLA  I    D  L+PS FEPCGL Q+ AMRYG +PIV   GGL DTV      E+  TGF    FS
Sbjct:  198 LNWMKAAVLYADRVTTVSPSYAHEIQTPAF-GQGLDQVMRMEAGKLSGIVNGIDTDLFNPARDPHLPASFSAED-LSGKAATKQVLQERLGLPVRADVPLIGMVSRLTDQKGFQLVLEELSHILQQDVQLVLLGTGDPDYEAAFSWFAKAYPEKLSANITFDLPLAQQIYGACDLFLMPSAFEPCGLSQMMAMRYGAIPIVHEIGGLKDTVASYNAYEKTGTGFGFDQFS 425          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_CLONN (Glycogen synthase OS=Clostridium novyi (strain NT) GN=glgA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.329e-42
Identity = 95/211 (45.02%), Postives = 136/211 (64.45%), Query Frame = 1
Query:   19 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            I++MKAGI+ +D + TVSP YA+E+ + E  G  L+ ++  R   + GI+NG+D    NP TD ++  KYD +  ++AK   KE LQ  + LP +R+IP+IG + RLEEQKG +++   I   ++EN+Q++VLGTG +  E   +     YP+K      F+  LA  I A +D  L+PSRFEPCG+ QL A+RYG+VPIV  TGGL DTV
Sbjct:  199 ISFMKAGIVYADAITTVSPTYAEEIKT-EYYGEGLNGLLQSRSKDLYGILNGIDTDVNNPSTDMFLFDKYDVNN-LEAKARNKEKLQEMLHLPKNRDIPMIGIVARLEEQKGFELIKEVIEELLQENIQLVVLGTGDQRYEDMFKFFAWKYPDKLSANIYFDGGLAQKIYAASDMFLMPSRFEPCGIGQLIALRYGSVPIVRETGGLNDTV 407          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_RHOBA (Glycogen synthase OS=Rhodopirellula baltica GN=glgA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.078e-41
Identity = 92/214 (42.99%), Postives = 135/214 (63.08%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKEN--VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 645
            ++N++K G++ SD+V TVSP YA E+ + E  G  LD+I++     + GI+NG+D   WNP TD ++   Y      DAK   K ALQAEVGLP D ++P++G IGRL +QKG D++   +   + E    Q +VLG+G   +E+QL +L   +PE+      F+  LAH I A +D  ++PS +EPCGL QL+++RYGT  +V  TGGL DT+
Sbjct:  212 QLNFLKTGVVTSDVVSTVSPTYALEIQTPE-YGCGLDSILQGIPQPVAGIINGIDTNIWNPETDPHLKRNYSVVDWADAKIDNKLALQAEVGLPQDPDVPLLGLIGRLADQKGWDLILPVLKQHLAEARPTQWVVLGSGDPKIEEQLRELTEQHPEQLAAYIGFSDALAHRIEASSDMFIMPSHYEPCGLNQLYSLRYGTPCVVTKTGGLADTI 424          
BLAST of FC868685 vs. ExPASy Swiss-Prot
Match: GLGA_MOOTA (Glycogen synthase OS=Moorella thermoacetica (strain ATCC 39073) GN=glgA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.078e-41
Identity = 92/214 (42.99%), Postives = 144/214 (67.29%), Query Frame = 1
Query:   16 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 651
            ++++MKAGIL +D+V TVS  YA E+ + E  G  LD ++RK    ++GI+NG+D +E++P TD+ + V YDA   ++ K   K ALQ E+ LPV R++PV+G I RL  QKG D+LAA +   +++++Q ++LG+G+   ++   + ++ Y +K      F+  LA  I AG D  L+PSRFEPCGL Q+ ++RYG VP+V +TGGL DT+++
Sbjct:  198 QVSYMKAGILYADLVNTVSKKYALEIQTPE-YGERLDGLLRKRAADLRGILNGIDYEEFDPATDRRLAVNYDADH-LEKKGENKAALQREMELPV-RDVPVLGLISRLVSQKGLDLLAAILDPLMQQDLQFVLLGSGEDYYQQLFSRYKVKYRDKMAVKIGFDPVLAQHIYAGCDIFLMPSRFEPCGLGQMISLRYGAVPVVRATGGLEDTIKD 408          
The following BLAST results are available for this feature:
BLAST of FC868685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_ACICJ8.438e-4340.77Glycogen synthase OS=Acidiphilium cryptum (strain ... [more]
GLGA_STRP41.439e-4241.74Glycogen synthase OS=Streptococcus pneumoniae sero... [more]
GLGA_CLOPE1.439e-4243.95Glycogen synthase OS=Clostridium perfringens GN=gl... [more]
GLGA_ANOFW1.439e-4241.56Glycogen synthase OS=Anoxybacillus flavithermus (s... [more]
GLGA_AZOSE3.206e-4241.85Glycogen synthase OS=Azoarcus sp. (strain EbN1) GN... [more]
GLGA_MYCMO4.188e-4243.13Glycogen synthase OS=Mycoplasma mobile GN=glgA PE=... [more]
GLGA_STRS79.329e-4240.43Glycogen synthase OS=Streptococcus equi subsp. zoo... [more]
GLGA_CLONN9.329e-4245.02Glycogen synthase OS=Clostridium novyi (strain NT)... [more]
GLGA_RHOBA2.078e-4142.99Glycogen synthase OS=Rhodopirellula baltica GN=glg... [more]
GLGA_MOOTA2.078e-4142.99Glycogen synthase OS=Moorella thermoacetica (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31003E03EF AbioticL1 Citrus clementina cDNA clone C31003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868685 ID=FC868685; Name=FC868685; organism=Citrus clementina; type=EST; length=704bp
ACCTGTGAGAGGTTCAAAATCAACTGGATGAAAGCTGGAATATTAGAATC
AGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTG
GTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATT
AAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGA
CAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGC
CTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGA
AATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTC
AGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGA
TAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAG
TTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATAT
TCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAA
GCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGA
ACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGA
AGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTG
TGGA
back to top