FC868694

Overview
NameFC868694
Unique NameFC868694
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3414 contig Ccv1_Contig3414:812..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_RHIME (30S ribosomal protein S1 OS=Rhizobium meliloti GN=rpsA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 31/111 (27.93%), Postives = 62/111 (55.86%), Query Frame = 2
Query:  110 VVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDP 442
            ++  D++   ++VS R    E   E++  ++  L  G +V+  +K IT +G FV++ G+  L+H T+++W     P+    IGQ V+ ++ +++    RI L +K++  DP
Sbjct:  162 ILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQLESDP 272          
BLAST of FC868694 vs. ExPASy Swiss-Prot
Match: RS1_BUCAP (30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpsA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 34/132 (25.76%), Postives = 67/132 (50.76%), Query Frame = 2
Query:   47 IYDQEKLKFLLSFLGQKINVNVVMADRKFRKLIVSVRPKEREELVEKKRSLMAKLRIGDIVKCCIKKITYFGVFVEVEGVPALIHQTEVSWDATLDPASYFKIGQVVEAKVHQLDFALERIFLSLKEITPDP 442
            + D   ++  +   G+++   V+  D+K   ++VS R     E   ++  L+  L+ G  +K  +K +T +G FV++ GV  L+H T+++W     P+    +G  +  K+ + D    R+ L LK++  DP
Sbjct:  135 LVDVRPVRDTIHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLESLQEGIEIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKILKFDKERTRVSLGLKQLGEDP 266          
The following BLAST results are available for this feature:
BLAST of FC868694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RS1_RHIME6.762e-1127.9330S ribosomal protein S1 OS=Rhizobium meliloti GN=... [more]
RS1_BUCAP6.762e-1125.7630S ribosomal protein S1 OS=Buchnera aphidicola su... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31003F03EF AbioticL1 Citrus clementina cDNA clone C31003F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868694 ID=FC868694; Name=FC868694; organism=Citrus clementina; type=EST; length=721bp
AGAGAGAGAAATTTCCCCAGAATTCAAATTGGATGATCTTCTTAGAATAT
ACGATCAAGAGAAACTGAAATTCTTGTTATCATTCCTTGGCCAGAAAATC
AATGTGAATGTTGTAATGGCTGACCGGAAATTCAGAAAACTTATTGTTTC
TGTGAGACCAAAAGAAAGGGAAGAATTGGTCGAGAAAAAGAGAAGTCTCA
TGGCCAAACTTCGCATTGGAGATATAGTGAAGTGCTGCATTAAGAAGATA
ACTTATTTTGGTGTTTTTGTTGAGGTTGAAGGTGTGCCTGCTTTAATTCA
CCAGACCGAAGTGTCATGGGATGCCACTTTGGACCCGGCATCATACTTCA
AAATTGGGCAGGTTGTGGAGGCAAAAGTTCATCAACTAGATTTTGCACTT
GAGCGCATTTTTCTGTCATTGAAGGAGATTACGCCGGATCCACTGACTGA
TGCCTTGGAGTCTGTGGTTGGTGGTCGTGATCCCTTGGATGGGAGATTGG
AAGCTGCTCAAGCCGATACTGAGTGGGCTGATGTGGAATCTCTTATAAGA
GAACTGCAAAAGGTGGATGGGATTGAGTCTGTATCAAAAGGCCGTTTCTT
TGTAAGCCCTGGTTTAGCTCCGACATTTCAGGTTTATATGTCAACAATGT
TCGAGAATCAGTACAAGTTACTTGCTCGATCAGGGAAAACAAGTGCAGAA
GTAATAGTGCAAGCATCCTTG
back to top