FC868696
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2B_PONAB (Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.037e-16 Identity = 54/197 (27.41%), Postives = 95/197 (48.22%), Query Frame = 1 Query: 61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAV 651 K ++++ R+LR R I R ++++EK ++ IK AK + + K LA++LV RK R + +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE K + EE +ND +D D V++VL I E + ++ +A R SA TS+A ++ + Sbjct: 7 KKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISDEEI 203
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2B_HUMAN (Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.037e-16 Identity = 54/197 (27.41%), Postives = 95/197 (48.22%), Query Frame = 1 Query: 61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAV 651 K ++++ R+LR R I R ++++EK ++ IK AK + + K LA++LV RK R + +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE K + EE +ND +D D V++VL I E + ++ +A R SA TS+A ++ + Sbjct: 7 KKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISDEEI 203
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2B_MOUSE (Charged multivesicular body protein 2b OS=Mus musculus GN=Chmp2b PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.568e-15 Identity = 53/197 (26.90%), Postives = 95/197 (48.22%), Query Frame = 1 Query: 61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAV 651 K ++++ R+LR R I R ++++EK ++ IK AK + + + LA++LV RK R + +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE K + EE +ND +D D V++VL I E + ++ +A R SA TS+A ++ + Sbjct: 7 KKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISDEEI 203
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2B_XENTR (Charged multivesicular body protein 2b OS=Xenopus tropicalis GN=chmp2b PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.674e-15 Identity = 54/205 (26.34%), Postives = 98/205 (47.80%), Query Frame = 1 Query: 61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEK 675 K ++R+ ++LR R I R ++++EK ++ IK AK + + + LA++LV+ RK R Y +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE K + EE +ND +D D+ V++VL I E + ++ +A + S S+++ GI DE+ Sbjct: 7 KKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKAGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSTSASKSS--------GISDEE 203
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2B_DANRE (Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.492e-15 Identity = 55/210 (26.19%), Postives = 97/210 (46.19%), Query Frame = 1 Query: 43 MNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDE 672 M + K ++++ ++LR R I R ++++EK ++ IK AK + + K LA++LV+ RK R Y +++ S+S + + G + + + M+ VN M + T+Q F KE K + EE +ND +D + V++VL I E + ++ A R SA T++ A+GI DE Sbjct: 1 MTSLFKKKTVDDVIKEQNKELRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACKVLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAMATTTKTMQAVNKKMDPKKTMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSGDEEESQDIVNQVLDEIGIEISGKMAHAPSAARKTPSAATAK--------ADGISDE 202
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2B_BOVIN (Charged multivesicular body protein 2b OS=Bos taurus GN=CHMP2B PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.492e-15 Identity = 52/197 (26.40%), Postives = 95/197 (48.22%), Query Frame = 1 Query: 61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAV 651 K ++++ R+LR R I R ++++EK ++ IK AK + + + LA++LV RK R + +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE K + EE +ND +D D V++VL I E + ++ +A R SA TS++ ++ + Sbjct: 7 KKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKSTISDEEI 203
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2A_XENLA (Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.561e-15 Identity = 50/209 (23.92%), Postives = 102/209 (48.80%), Query Frame = 1 Query: 61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEE 687 + P++LLR QR L + R ++R+ + ++++EK + IK AK+ + + K +A++LVR+R+ V + +A + ++S+ + + + + M +N +K P++ M EF K+ + EE +NDA+D A+ D V++ + E L + + + + A++ +A A D + +LEE Sbjct: 8 RKTPEELLRQNQRALNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEES----DAVVSQVLDELGLTLTDELSNLPSTGGSLSVAGAKKGEATAALADADADLEE 212
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CH2BB_XENLA (Charged multivesicular body protein 2b-B OS=Xenopus laevis GN=chmp2b-B PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.016e-14 Identity = 52/197 (26.40%), Postives = 95/197 (48.22%), Query Frame = 1 Query: 61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEA--VRKERVKQSAQTSRAAQEED 645 K ++R+ ++LR R I R ++++EK ++ IK AK + + + LA++LV+ RK R Y +++ S+S + + G ++ +A+ M+ VN M + TMQ F KE K + +E +ND +D D+ V++VL I E + ++ +A K SA S+ +E+ Sbjct: 7 KKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTDEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSTSAAKSKGISDEE 203
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHM2A_CHICK (Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.733e-14 Identity = 56/218 (25.69%), Postives = 106/218 (48.62%), Query Frame = 1 Query: 61 KPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHL-----GESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRAR 699 + P++LLR QR L + R ++R+ + ++ +EK + IK AK+ + + K +A++LVR+R+ V + +A + ++S+ + S+A+A + + M +N +K P++ M EF K+ + EE +NDA+D A+ V +VL + +L + +A RAA+ A+A+ D +E +N R Sbjct: 8 RKTPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALA-----MKGVTKAMATMNRQLKLPQIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVLDELGLNLTDEL-ATLPPPGGSLAAGEGRAAEAAAALADADADLEERLKNLRR 219
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: DID4_YEAST (DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae GN=DID4 PE=1 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 6.586e-14 Identity = 46/170 (27.06%), Postives = 90/170 (52.94%), Query Frame = 1 Query: 70 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTAL-DSXXXXXXXXXXVDKVLTAIAGETAAQL 576 PQ+ L+ QR L + R +ER+ R ++ ++K + IK +AK +++AK A++LVR+R + + KAQ+ +IS+ + + + ++++ ++ +N M P++ EF K+ G +EF+++A+D + D V+KVL I + +QL Sbjct: 14 PQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAKVQAKDLVRTRNYIQKFDNMKAQLQAISLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLPQLQRISMEFEKQSDLMGQRQEFMDEAIDNVMGDEVDEDEEADEIVNKVLDEIGVDLNSQL 183 The following BLAST results are available for this feature:
BLAST of FC868696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC868696 ID=FC868696; Name=FC868696; organism=Citrus clementina; type=EST; length=725bpback to top |