FC868699

Overview
NameFC868699
Unique NameFC868699
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868699 vs. ExPASy Swiss-Prot
Match: ARL2_DICDI (ADP-ribosylation factor-like protein 2 OS=Dictyostelium discoideum GN=arl2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 49/179 (27.37%), Postives = 67/179 (37.43%), Query Frame = 2
Query:  173 VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGDGFKWL 709
            VL  L   +KE +IL LGLDNAGKTT+L     E +    PT     + L   + K   +D+GG +  R  W                    R  + K                FLV  NK D+  A + EE+  +L L               N    E+  CS V  +G  +G  W+
Sbjct:    6 VLKKLKQKEKELRILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIQTLMYKEYKLNIWDIGGQKTLRSYWRNYYEENDAVIWVIDSSDIRRIDDCKFELKKLLEEEKFAGASFLVFANKQDLDGAMTSEEISKYLDLEQL------------NTHHWEIMSCSAVTGLGLEEGIDWV 172          
BLAST of FC868699 vs. ExPASy Swiss-Prot
Match: ARL1_YEAST (ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae GN=ARL1 PE=1 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 52/180 (28.89%), Postives = 70/180 (38.89%), Query Frame = 2
Query:  191 LW--QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 724
            LW   KE +IL LGLD AGKTT+L+ L+   +V  +PT     E LS   +K   +DLGG    R  W                   +R + + K            +   LV  NK D P A S  E+   L            NL +   R   +   S ++  G  +G  WL   IK
Sbjct:   12 LWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKEL------------NLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179          
BLAST of FC868699 vs. ExPASy Swiss-Prot
Match: ARL1_DROME (ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=1 SV=5)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 51/191 (26.70%), Postives = 77/191 (40.31%), Query Frame = 2
Query:  152 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 724
            +L +F G+L S     +E +IL LGLD AGKTT+L+ L+   +V   PT     E+++   +KF+ +DLGG    R  W                   +R   SK                 +VL NK D+    +  E+ + LGL N               R  ++F  S  +  G      WLS  ++
Sbjct:    4 VLSYFRGLLGS-----REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGCMTVAEVHHALGLENLKN------------RTFQIFKTSATKGEGLDQAMDWLSNTLQ 177          
The following BLAST results are available for this feature:
BLAST of FC868699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
ARL2_DICDI8.902e-1127.37ADP-ribosylation factor-like protein 2 OS=Dictyost... [more]
ARL1_YEAST8.902e-1128.89ADP-ribosylation factor-like protein 1 OS=Saccharo... [more]
ARL1_DROME8.902e-1126.70ADP-ribosylation factor-like protein 1 OS=Drosophi... [more]

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Properties
Property NameValue
Genbank descriptionC31003F08EF AbioticL1 Citrus clementina cDNA clone C31003F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868699 ID=FC868699; Name=FC868699; organism=Citrus clementina; type=EST; length=725bp
GGAGCACTGAACTTGCTCATCTTCGGGTCAGTATCAAATCGAAACAGAGG
CCTTGAATTGGACGATCTGATTCGTTCTCAGCCTTAGATCGTCGTAAATT
CAAGCTCGATCCGTTTTCGTTTCTAATTTGTCTACCGATAAAGCCATGTT
TCTCCTCGACTGGTTCTACGGCGTGCTGGCCTCCCTCGGTCTTTGGCAGA
AAGAGGCCAAGATCTTGTTTTTAGGGCTTGATAATGCTGGAAAAACAACG
TTGCTTCACATGTTGAAAGATGAGAGATTGGTTCAACATCAGCCAACACA
GTATCCCACATCGGAAGAGCTTAGTATTGGGAAAATTAAGTTCAAGGCGT
TTGATTTGGGAGGCCATCAGATTGCTAGGAGAGTCTGGAAGGATTACTAT
GCGAAGGTTGATGCTGTGGTATACCTAGTGGATGCCTATGACAAAGAGAG
GTTTGCAGAATCAAAGAAAGAACTGGATGCACTCCTTTCTGATGAGGCAT
TGGCCAATGTTCCTTTTCTTGTGTTAGGAAACAAGATTGACATCCCTTAT
GCTGCTTCTGAGGAAGAGTTGCGTTACCACCTTGGCCTATCAAATTTCAC
CACTGGGAAGGGGAAGGTTAATCTAACGGACTCAAATGTCCGTCCACTGG
AGGTGTTTATGTGTAGCATAGTTCGCAAAATGGGATATGGTGATGGTTTC
AAATGGCTCTCTCAATACATTAAGT
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