FC868702

Overview
NameFC868702
Unique NameFC868702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868702_ssr120 microsatellite FC868702_ssr120:120..131. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13179 contig Ccv1_Contig13179:45..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC868702 vs. ExPASy Swiss-Prot
Match: AQPZ2_RHIME (Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 38/119 (31.93%), Postives = 61/119 (51.26%), Query Frame = 3 
Query:  327 GVGILGIAWAFGGMIFILVYCTAGISGGHINPTVTFGLFLGRKVSLIRALLYMVAQCLGAICGCG--FVKAFQKSYYNRYGGGANELAD----GYNKGTGLGAEIIGTFVLVYTVFSAT 665
            G+G+LG+++AFG  +  + Y   GISGGH NP V+ GL +  +V     + Y++AQ  GAI      +V A  K+ +      AN   +    GY+    L  E++ TF  +  +  +T
Sbjct:   33 GIGLLGVSFAFGLTVLTMAYTVGGISGGHFNPAVSLGLAVAGRVPAASLVSYVIAQVAGAIIAAAVLYVIATGKADFQLGSFAANGYGEHSPGGYSLTAALVTEVVMTFFFLIIILGST 151
The following BLAST results are available for this feature:
BLAST of FC868702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
AQPZ2_RHIME8.235e-1131.93Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31003F11EF AbioticL1 Citrus clementina cDNA clone C31003F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868702 ID=FC868702; Name=FC868702; organism=Citrus clementina; type=EST; length=692bp
ATCATTAAACTCTGTAGTCACACAACAGTCGTAGCTCTTGTTTCTCCCTC
TCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAAATGGGGAAGGATGT
TGAAGTTGCTGAGCAGCAAGGCGGCGGCGGCGAGTTCTCAGCCAAGGACT
ACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCGAGGAGCTGGGCAAG
TGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATCGCTACGCTTTTGTT
TCTTTATGTTACCGTCTTGACTGTGATTGGATACAAGAGCCAGACTGATC
CCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCATTCTTGGCATCGCT
TGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTACTGCACAGCCGGTAT
TTCTGGTGGACATATCAACCCGACTGTGACATTCGGACTGTTCTTGGGGC
GCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGGTAGCACAGTGCTTG
GGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTCCAAAAATCATACTA
CAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGATGGATACAACAAGG
GCACCGGACTGGGTGCTGAGATCATCGGTACTTTCGTTCTTGTCTACACT
GTTTTCTCTGCCACTGATCCTAAGAGGAGCGCAAGAGACTCC
back to top