FC868702

Overview
NameFC868702
Unique NameFC868702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868702_ssr120 microsatellite FC868702_ssr120:120..131. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13179 contig Ccv1_Contig13179:45..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868702 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.060e-70
Identity = 130/183 (71.04%), Postives = 142/183 (77.60%), Query Frame = 3
Query:  144 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPTVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDS 692
            KDY DPPPAP  D  EL  WSF+RA IAEFIA            IGYK +TDP      C  VG+LGIAW+FGGMIF+LVYCTAGISGGHINP VTFGLFL RKVSL+RAL+YM+AQC GAICG G VKAF K  YN++GGGAN +A GYNKGT  GAE+IGTFVLVYTVFSATDPKRSARDS
Sbjct:   17 KDYVDPPPAPFFDMGELKLWSFWRAAIAEFIATLLFLYITVATVIGYKKETDP------CASVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTAFGAELIGTFVLVYTVFSATDPKRSARDS 193          
BLAST of FC868702 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 7.329e-68
Identity = 130/183 (71.04%), Postives = 140/183 (76.50%), Query Frame = 3
Query:  144 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPTVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDS 692
            KDY DPPPAPL D  EL  WSFYRA+IAEFIA            IGYK Q+    + DQCGGVG LGIAWAFGGMIFILVYCTAGISGGHINP VTFGL L RKVS+IRA++Y+VAQCLG I G G VK   K  YN  GGGAN +A GY+ GT LGAEIIGTFVLVYTVFSATDPKR+ARDS
Sbjct:   15 KDYTDPPPAPLFDVGELRLWSFYRALIAEFIATLLFLYITVATVIGYKVQS----SADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANGGGANMVASGYSTGTALGAEIIGTFVLVYTVFSATDPKRNARDS 193          
BLAST of FC868702 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.435e-63
Identity = 124/183 (67.76%), Postives = 134/183 (73.22%), Query Frame = 3
Query:  144 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPTVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDS 692
            KDY +PPPAPL +  EL  WSFYRA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINP VTFGLFL RK+SL RA+ YM+ QCLGAICG G VK FQ + Y   GGGAN +A GY KG+GLGAEIIGTFVLVYTVFSATD KRSARDS
Sbjct:   30 KDYKEPPPAPLFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRA--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDS 206          
BLAST of FC868702 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 2.065e-62
Identity = 120/203 (59.11%), Postives = 140/203 (68.97%), Query Frame = 3
Query:   87 MGKDVEVAXXXXXXXXFSAK-DYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPTVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDS 692
            M    EVA         +AK  Y DPPPAPL+D  ELGKWS YRA+IAEF+A            IGYK+Q       D C GVG LG+AW+FG  IF+LVYCT G+SGGHINP VT GLF GRK+SL+R +LY+VAQCLGAI G G VK   K  Y+  GGGAN ++DGY+    LGAEI+GTF+LVYTVFSATDPKR+ARDS
Sbjct:    1 MASKEEVAVETVEGGAAAAKAPYWDPPPAPLLDTSELGKWSLYRALIAEFMATLIFLYVSIATVIGYKNQ---RATVDACTGVGYLGVAWSFGATIFVLVYCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVKGIMKRPYDALGGGANTVSDGYSAAGALGAEIVGTFILVYTVFSATDPKRTARDS 200          
BLAST of FC868702 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 238.81 bits (608), Expect = 2.065e-62
Identity = 121/183 (66.12%), Postives = 133/183 (72.68%), Query Frame = 3
Query:  144 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPTVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDS 692
            KDY +PPPAPL +  EL  WSFYRA IAEF+A            +G       N +T +C  VGI GIAW+FGGMIF LVYCTAGISGGHINP VTFGLFL RK+SL RAL YMV QCLGAICG G VK FQK  Y   GGGAN +A GY KG GLGAEI+GTF+LVYTVFSATD KR+ARDS
Sbjct:   31 KDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGV------NNSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDS 207          
BLAST of FC868702 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 3.523e-62
Identity = 123/184 (66.85%), Postives = 133/184 (72.28%), Query Frame = 3
Query:  141 AKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPTVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDS 692
            +KDY +PPPAP  +  EL  WSFYRA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINP VTFGLFL RK+SL RAL Y+V QCLGAICG G VK FQ   Y   GGGAN +A GY KG+GLGAEI+GTFVLVYTVFSATD KRSARDS
Sbjct:   29 SKDYKEPPPAPFFEPGELKSWSFYRAGIAEFIATFLFLYVTVLTVMGVKRA--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFQPGLYQTNGGGANVVAHGYTKGSGLGAEIVGTFVLVYTVFSATDAKRSARDS 206          
BLAST of FC868702 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.523e-62
Identity = 123/183 (67.21%), Postives = 133/183 (72.68%), Query Frame = 3
Query:  144 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPTVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDS 692
            KDY +PPPAP  +  EL  WSFYRA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINP VTFGLFL RK+SL RA+ Y+V QCLGAICG G VK FQ + Y   GGGAN +A GY KG+GLGAEIIGTFVLVYTVFSATD KRSARDS
Sbjct:   29 KDYKEPPPAPFFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRA--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDS 205          
BLAST of FC868702 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.523e-62
Identity = 123/185 (66.49%), Postives = 134/185 (72.43%), Query Frame = 3
Query:  138 SAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPTVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDS 692
            S KDY +PPPAPL +  EL  WSF+RA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINP VTFGLFL RK+SL RA+ Y+V QCLGAICG G VK FQ   Y   GGGAN +A GY KG+GLGAEIIGTFVLVYTVFSATD KR+ARDS
Sbjct:   27 SDKDYKEPPPAPLFEPGELASWSFWRAGIAEFIATFLFLYITVLTVMGVKRS--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTIAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDS 205          
BLAST of FC868702 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.009e-62
Identity = 120/183 (65.57%), Postives = 132/183 (72.13%), Query Frame = 3
Query:  144 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPTVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDS 692
            KDY +PPPAPL + EEL  WSFYRA IAEF+A            +G         ++ +C  VGI GIAW+FGGMIF LVYCTAGISGGHINP VTFGLFL RK+SL RAL YMV QCLGAICG G VK FQ+  Y   GGGAN +  GY KG GLGAEI+GTFVLVYTVFSATD KRSARDS
Sbjct:   31 KDYKEPPPAPLFEAEELTSWSFYRAGIAEFVATFLFLYISILTVMGVSK------SSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDS 207          
BLAST of FC868702 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.009e-62
Identity = 123/185 (66.49%), Postives = 133/185 (71.89%), Query Frame = 3
Query:  138 SAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPTVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDS 692
            S KDY +PPPAP  +  EL  WSF+RA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINP VTFGLFL RK+SL RAL Y+V QCLGAICG G VK FQ   Y   GGGAN +A GY KG+GLGAEIIGTFVLVYTVFSATD KR+ARDS
Sbjct:   27 SDKDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRS--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDS 205          
The following BLAST results are available for this feature:
BLAST of FC868702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PIP1_ATRCA2.060e-7071.04Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP26_ORYSJ7.329e-6871.04Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP14_ARATH5.435e-6367.76Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP27_ORYSJ2.065e-6259.11Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP12_ORYSJ2.065e-6266.12Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP15_ARATH3.523e-6266.85Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH3.523e-6267.21Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP12_ARATH3.523e-6266.49Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP15_MAIZE6.009e-6265.57Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP11_VICFA6.009e-6266.49Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31003F11EF AbioticL1 Citrus clementina cDNA clone C31003F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868702 ID=FC868702; Name=FC868702; organism=Citrus clementina; type=EST; length=692bp
ATCATTAAACTCTGTAGTCACACAACAGTCGTAGCTCTTGTTTCTCCCTC
TCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAAATGGGGAAGGATGT
TGAAGTTGCTGAGCAGCAAGGCGGCGGCGGCGAGTTCTCAGCCAAGGACT
ACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCGAGGAGCTGGGCAAG
TGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATCGCTACGCTTTTGTT
TCTTTATGTTACCGTCTTGACTGTGATTGGATACAAGAGCCAGACTGATC
CCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCATTCTTGGCATCGCT
TGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTACTGCACAGCCGGTAT
TTCTGGTGGACATATCAACCCGACTGTGACATTCGGACTGTTCTTGGGGC
GCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGGTAGCACAGTGCTTG
GGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTCCAAAAATCATACTA
CAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGATGGATACAACAAGG
GCACCGGACTGGGTGCTGAGATCATCGGTACTTTCGTTCTTGTCTACACT
GTTTTCTCTGCCACTGATCCTAAGAGGAGCGCAAGAGACTCC
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