FC868703

Overview
NameFC868703
Unique NameFC868703
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868703 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.762e-42
Identity = 82/178 (46.07%), Postives = 117/178 (65.73%), Query Frame = 3
Query:  195 VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTLWHTIXLK 725
            ++I YTK  IN ++ D+ SGK FPV +P T E I  + EGD  D+D+AV  AR+AF  G PW  M   ER R++ + ADLIE++   LA +E+ N GK +  +   ++   ++ L Y AGWADKI G T+P DG++   T HEP+GV GQI+PWNFPL++  WK+ PAL+  +T+ +K
Sbjct:   11 LKIQYTKIFINNEWHDSVSGKKFPVLNPATEEQICLIEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESLNAGKLFPNAYLMDLGGCIKTLRYCAGWADKIQGRTMPMDGDFFCYTRHEPVGVCGQIIPWNFPLVMLIWKIGPALSCGNTVIVK 188          
BLAST of FC868703 vs. ExPASy Swiss-Prot
Match: ALDH_ENCBU (Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN=ALDH PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.284e-41
Identity = 88/190 (46.32%), Postives = 119/190 (62.63%), Query Frame = 3
Query:  159 TAAVVEEPIIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFD-EGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTLWHTIXLK 725
            +A  + EP+   +++ +TK  IN +FVD+ SGKTF   +P T E +A V EGD  DID+AVA AR AF  +  + K    +R R++ + ADLIE +  +L  LET +NGKP+  S   +  M  ++L YYAG+ADKI G T+P DGN    T HEP+GV G I PWNFPL L   K+APA+    T+ LK
Sbjct:    2 SAPKIPEPV-KDLKVEFTKIFINNEFVDSVSGKTFATINPSTGEKLAEVQEGDKADIDKAVAAARAAFKRDAEYRKHDASDRGRLLFKLADLIEAHRVQLRTLETLDNGKPFAMSYLGDTLMAQKVLRYYAGFADKIVGQTIPADGNVFCYTRHEPVGVVGAITPWNFPLHLAASKIAPAIAAGCTLVLK 190          
BLAST of FC868703 vs. ExPASy Swiss-Prot
Match: AL1A3_HUMAN (Aldehyde dehydrogenase family 1 member A3 OS=Homo sapiens GN=ALDH1A3 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.735e-41
Identity = 81/178 (45.51%), Postives = 114/178 (64.04%), Query Frame = 3
Query:  195 VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTLWHTIXLK 725
            +++ +TK  IN ++ ++ SGK F   +P T E I  V EGD  D+D+AV  A+ AF  G PW ++    R R++ + ADL+E++   LAALET + GKP++ +   ++   +R L Y+AGWADKI G T+P D N    T HEPIGV G I PWNFPLL+  WK+APAL   +T+ LK
Sbjct:   27 LEVKFTKIFINNEWHESKSGKKFATCNPSTREQICEVEEGDKPDVDKAVEAAQVAFQRGSPWRRLDALSRGRLLHQLADLVERDRATLAALETMDTGKPFLHAFFIDLEGCIRTLRYFAGWADKIQGKTIPTDDNVVCFTRHEPIGVCGAITPWNFPLLMLVWKLAPALCCGNTMVLK 204          
BLAST of FC868703 vs. ExPASy Swiss-Prot
Match: ALDH1_MACPR (Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelides proboscideus GN=ALDH1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.370e-41
Identity = 82/178 (46.07%), Postives = 115/178 (64.61%), Query Frame = 3
Query:  195 VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTLWHTIXLK 725
            ++I +TK  IN ++ D+ SGKTFPV++P T E I  V E D ED+D+AV  AR+AF  G PW  M   ER +++ + ADLIE++   LA LE+ N GK +  +   ++   +++L Y AGWADKI G T+P DG +   T HEPIGV GQI PWN P++L   K+ PAL   +T+ +K
Sbjct:   16 IKIQHTKLFINNEWHDSVSGKTFPVFNPATEEKICEVEEADKEDVDKAVKAAREAFQMGSPWRTMDASERGQLIYKLADLIERDRLLLATLESINAGKIFASAYLMDLDYCIKVLRYCAGWADKIQGRTIPVDGEFFSYTRHEPIGVCGQIFPWNAPMILLACKIGPALCCGNTVIVK 193          
BLAST of FC868703 vs. ExPASy Swiss-Prot
Match: AL1A7_RAT (Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norvegicus GN=Aldh1a7 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 8.320e-41
Identity = 82/188 (43.62%), Postives = 121/188 (64.36%), Query Frame = 3
Query:  177 EPIIPP----VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTLWHTIXLK 725
            +P +P     ++I +TK  IN ++ ++ +GK FPV +P T EVI +V EGD  D+D+AV  AR+AF  G PW  M   ER  ++ + ADL+E++   LA +E+ N GK +  +   +  + ++ L Y+AGWADKIHG T+P DG+    T  EPIGV GQI+PWN PL+LF WK+  AL+  +T+ +K
Sbjct:    6 QPAVPAPLANLKIQHTKIFINNEWHNSLNGKKFPVINPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGCLLNKLADLMERDRVLLATMESMNAGKIFTHAYLLDTEVSIKALKYFAGWADKIHGQTIPSDGDVFTYTRREPIGVCGQIIPWNGPLILFIWKIGAALSCGNTVIVK 193          
BLAST of FC868703 vs. ExPASy Swiss-Prot
Match: CROM_ENTDO (Omega-crystallin OS=Enteroctopus dofleini PE=1 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.419e-40
Identity = 79/177 (44.63%), Postives = 116/177 (65.54%), Query Frame = 3
Query:  198 QISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTLWHTIXLK 725
            +I +TK  IN QFVD+ +GK + V +P T + I +V EG   DID+AV   + AF  G PW +M    R  ++ R ADL E+++  L++LET N GKPY +S   ++   +++L YYAGWADK  G  +P DG++   T HEP+G+ G I+PWN+P+L+ TWK+APAL+  + I +K
Sbjct:   12 EIKFTKIFINNQFVDSVNGKAYSVINPCTTKKICDVQEGSKADIDKAVQACKLAFKRGTPWRRMDASRRGHLLYRLADLFERDIAYLSSLETLNTGKPY-KSAYQDIVHCIQVLRYYAGWADKNMGQNIPVDGDFFSFTKHEPVGICGLIIPWNYPMLMMTWKMAPALSCGNCIVVK 187          
BLAST of FC868703 vs. ExPASy Swiss-Prot
Match: AL1A3_RAT (Aldehyde dehydrogenase family 1 member A3 OS=Rattus norvegicus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.393e-40
Identity = 78/178 (43.82%), Postives = 111/178 (62.36%), Query Frame = 3
Query:  195 VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTLWHTIXLK 725
            +++ +TK  IN  + +  SG+ F  Y+P T E I  V EGD  D+D+AV  A+ AF  G PW ++    R +++ + ADLIE++   LA LET + GKP++ +   ++   ++   Y+AGWADKI G T+P D N    T HEPIGV G I PWNFPLL+  WK+APAL   +T+ LK
Sbjct:   27 LEVKFTKIFINNDWHEPKSGRKFATYNPSTLEKICEVEEGDKPDVDKAVEAAQAAFQRGSPWRRLDALSRGQLLHQLADLIERDRAILATLETMDTGKPFLHAFFVDLEGCIKTFRYFAGWADKIQGRTIPTDDNVMCFTRHEPIGVCGAITPWNFPLLMLAWKLAPALCCGNTVVLK 204          
BLAST of FC868703 vs. ExPASy Swiss-Prot
Match: AL1A3_MOUSE (Aldehyde dehydrogenase family 1 member A3 OS=Mus musculus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.393e-40
Identity = 77/178 (43.26%), Postives = 112/178 (62.92%), Query Frame = 3
Query:  195 VQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTLWHTIXLK 725
            +++ +TK  IN  + ++ SG+ F  Y+P T E I  V EGD  D+D+AV  A+ AF  G PW ++    R +++ + ADL+E++   LA LET + GKP++ +   ++   ++   Y+AGWADKI G T+P D N    T HEPIGV G I PWNFPLL+  WK+APAL   +T+ LK
Sbjct:   27 LEVKFTKIFINNDWHESKSGRKFATYNPSTLEKICEVEEGDKPDVDKAVEAAQAAFQRGSPWRRLDALSRGQLLHQLADLVERDRAILATLETMDTGKPFLHAFFVDLEGCIKTFRYFAGWADKIQGRTIPTDDNVVCFTRHEPIGVCGAITPWNFPLLMLAWKLAPALCCGNTVVLK 204          
BLAST of FC868703 vs. ExPASy Swiss-Prot
Match: ALDH_EMENI (Aldehyde dehydrogenase OS=Emericella nidulans GN=aldA PE=3 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 9.199e-40
Identity = 79/169 (46.75%), Postives = 115/169 (68.05%), Query Frame = 3
Query:  222 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTLWHTIXLKS 728
            IN +FV    GKTF V +P   +VI +V E   +D+D AVA AR AF EGPW ++TP ER  ++ + ADL+E++++ LAA+E+ +NGK +  + K ++   +  L YYAGWADKIHG T+  +      T HEP+GV GQI+PWNFPLL+++WK+ PA+   +T+ LK+
Sbjct:   23 INNEFVKGVEGKTFQVINPSNEKVITSVHEATEKDVDVAVAAARAAF-EGPWRQVTPSERGILINKLADLMERDIDTLAAIESLDNGKAFTMA-KVDLANSIGCLRYYAGWADKIHGQTIDTNPETLTYTRHEPVGVCGQIIPWNFPLLMWSWKIGPAVAAGNTVVLKT 189          
BLAST of FC868703 vs. ExPASy Swiss-Prot
Match: ALDH_ALTAL (Aldehyde dehydrogenase OS=Alternaria alternata GN=ALTA10 PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 9.199e-40
Identity = 83/172 (48.26%), Postives = 110/172 (63.95%), Query Frame = 3
Query:  222 INGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL---TVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTLWHTIXLKS 728
            IN +FV A  GKTF V +P T EVI +V E   +D+D AVA ARKAF+ GPW K TP  R +++ + ADL EKN + +AA+E  +NGK +  +   +VP     L YY GWADKI G    T P   NY      EPIGV GQI+PWNFP+L+++WK+ PA+   +T+ LK+
Sbjct:   22 INNEFVKAVDGKTFDVINPSTEEVICSVQEATEKDVDIAVAAARKAFN-GPWRKETPENRGKLLNKLADLFEKNADLIAAVEALDNGKAFSMAKNVDVPAAAGCLRYYGGWADKIEGKVVDTAPDSFNY---IRKEPIGVCGQIIPWNFPILMWSWKIGPAIATGNTVVLKT 189          
The following BLAST results are available for this feature:
BLAST of FC868703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
AL1A1_RABIT5.762e-4246.07Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
ALDH_ENCBU1.284e-4146.32Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN... [more]
AL1A3_HUMAN3.735e-4145.51Aldehyde dehydrogenase family 1 member A3 OS=Homo ... [more]
ALDH1_MACPR6.370e-4146.07Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelid... [more]
AL1A7_RAT8.320e-4143.62Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norv... [more]
CROM_ENTDO1.419e-4044.63Omega-crystallin OS=Enteroctopus dofleini PE=1 SV=... [more]
AL1A3_RAT5.393e-4043.82Aldehyde dehydrogenase family 1 member A3 OS=Rattu... [more]
AL1A3_MOUSE5.393e-4043.26Aldehyde dehydrogenase family 1 member A3 OS=Mus m... [more]
ALDH_EMENI9.199e-4046.75Aldehyde dehydrogenase OS=Emericella nidulans GN=a... [more]
ALDH_ALTAL9.199e-4048.26Aldehyde dehydrogenase OS=Alternaria alternata GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31003F12EF AbioticL1 Citrus clementina cDNA clone C31003F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868703 ID=FC868703; Name=FC868703; organism=Citrus clementina; type=EST; length=729bp
GGGAGAAGAGTTGAATAGGTCGCCTCTTCGCTTTGGCTATGGCAGCTGCT
CGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTTCTGCTTCTCCTTC
TCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCAAGAGGCATCAGCA
GGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCATTCCACCTGTTCAA
ATTAGTTACACTAAGAATTTAATAAATGGCCAATTTGTAGACGCAGCATC
AGGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGTGATTGCTA
ATGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTGCTACTGCT
CGCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCTTATGAGAG
GTCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAACATGGAGG
AGCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATGTACAATCT
CTCAAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTATTATGCTGG
ATGGGCTGATAAAATCCACGGACTAACTGTCCCTGGTGATGGAAATTACC
ATATTCAAACTTTACATGAACCAATTGGCGTTGCTGGCCAGATAGTTCCC
TGGAACTTTCCTCTTCTCTTGTTTACTTGGAAAGTAGCGCCTGCACTAAC
TTTGTGGCATACTATTGNTCTAAAGTCTG
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