FC868706

Overview
NameFC868706
Unique NameFC868706
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868706 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.085e-30
Identity = 68/214 (31.78%), Postives = 127/214 (59.35%), Query Frame = 2
Query:   38 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPA--SSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMV 673
            ++Y+ V++GTVVLAE ++ +GN   +  + L+KL    S  +  +S D + F+ L   G  FL +A+++ GR VPF +LE +   F + YG    N                      AY ++ EF   L + M++  S+P  +  L++++ +++E++ +M++NIEK+++RG+RIELLVDKT  +Q  +  F++Q ++LRR +W++N ++ +++
Sbjct:    3 IVYAVVARGTVVLAEFSAVTGNTGAVVRRILEKLSPEISDERLCFSQDRYIFHILRSDGLTFLCMANDTFGRRVPFSYLEEIHMRFMKNYGKVAHNAP--------------------AYAMNDEFSRVLHQQMEFFSSNPS-VDTLNRVRGEVSEIRSVMVENIEKIMERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKNAKLLVLL 195          
BLAST of FC868706 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.644e-30
Identity = 73/214 (34.11%), Postives = 126/214 (58.88%), Query Frame = 2
Query:   38 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNI-EKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVG 676
            +IYS V++G+ VLAE TS +GNF TI  + L  +P + +K +Y  + + F++L+     +L +ADE  GR +PF FL+ VK+ FK  YG                       + +IAY ++ +F   L+  M +  S+   +  +S+  A+I EVK I++ +I  ++L RGE+IE+LV++T+ L  Q+  F++Q +QL+  MW +N+++ L++G
Sbjct:    3 IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMYG--------------------DKGKTAIAYGMNSDFSRTLENLMDH-YSNTTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKIEMLVERTDTLNQQSFKFKKQSKQLKCAMWWKNVKLMLVLG 195          
BLAST of FC868706 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.677e-28
Identity = 67/212 (31.60%), Postives = 118/212 (55.66%), Query Frame = 2
Query:   38 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMV 673
            ++++ V++GT +LA+H    GNF  +  Q L K+P+ ++K TYS   + F+++     V+L + D+   RS  F FL  VK  F+  YG+  Q                     ++ Y ++ EF   L   +++  S  + + K+ + +AQ+ E+KGIM+ NI+ V  RGER+ELL+DKTENL   + +F+   R L R M ++N+++ +++
Sbjct:    3 ILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQT--------------------ALPYAMNSEFSSVLAAQLKH-HSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIKLTIII 193          
BLAST of FC868706 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 9.683e-28
Identity = 67/212 (31.60%), Postives = 118/212 (55.66%), Query Frame = 2
Query:   38 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMV 673
            ++++ V++GT +LA+H    GNF  +  Q L K+P+ ++K TYS   + F+++     V+L + D+   RS  F FL  +K  F+  YG+  Q                     ++ Y ++ EF   L   +++  S  + + K+ + +AQ+ E+KGIM+ NI+ V  RGER+ELL+DKTENL   + +F+   R L R M ++NL++ +++
Sbjct:    3 ILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT--------------------ALPYAMNSEFSSVLAAQLKH-HSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIII 193          
BLAST of FC868706 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.683e-28
Identity = 67/212 (31.60%), Postives = 118/212 (55.66%), Query Frame = 2
Query:   38 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMV 673
            ++++ V++GT +LA+H    GNF  +  Q L K+P+ ++K TYS   + F+++     V+L + D+   RS  F FL  +K  F+  YG+  Q                     ++ Y ++ EF   L   +++  S  + + K+ + +AQ+ E+KGIM+ NI+ V  RGER+ELL+DKTENL   + +F+   R L R M ++NL++ +++
Sbjct:    3 ILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT--------------------ALPYAMNSEFSSVLAAQLKH-HSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIII 193          
BLAST of FC868706 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.157e-27
Identity = 65/212 (30.66%), Postives = 118/212 (55.66%), Query Frame = 2
Query:   38 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMV 673
            ++++ V++GT +LA+H    GNF  +  Q L K+P+ ++K TYS   + F+++     ++L + D+   RS  F FL  +K  F+  YG+  Q                     ++ Y ++ EF   L   ++Y  S  +   ++++ +AQ+ E+KGIM+ NI+ V  RGE++ELL+DKTENL   + +F+   R L R M ++NL++ +++
Sbjct:    3 ILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT--------------------ALPYAMNSEFSSVLAAQLKY-HSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIII 193          
BLAST of FC868706 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.817e-27
Identity = 66/212 (31.13%), Postives = 118/212 (55.66%), Query Frame = 2
Query:   38 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMV 673
            ++++ V++GT +LA+H    GNF  +  Q L K+P+ ++K TYS   + F+++     V+L + D+   RS  F FL  VK  F+  YG+  Q                     ++ Y ++ EF   L   +++  S  + + ++++ +AQ+ E+KGIM+ NI+ V  RGER+ELL+DKTENL   + +F+   R L R M ++N+++  ++
Sbjct:    3 ILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFGFLNEVKKRFQTTYGSRAQT--------------------ALPYAMNSEFSSVLAAQLKH-HSENQSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCVKNVKLTAII 193          
BLAST of FC868706 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 3.680e-27
Identity = 66/212 (31.13%), Postives = 117/212 (55.19%), Query Frame = 2
Query:   38 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMV 673
            ++++ V++GT +LA+H    GNF  +  Q L K+P+ ++K TY    + F+++     V+L + D+   RS  F FL  +K  F+  YG+  Q                     ++ Y ++ EF   L   +++  S  + + K+ + +AQ+ E+KGIM+ NI+ V  RGER+ELL+DKTENL   + +F+   R L R M ++NL++ +++
Sbjct:    3 ILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYPHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT--------------------ALPYAMNSEFSSVLAAQLKH-HSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIII 193          
BLAST of FC868706 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.973e-24
Identity = 67/217 (30.88%), Postives = 117/217 (53.92%), Query Frame = 2
Query:   26 NQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMVG 676
            +Q  ++Y+ VS   V L EH   +GNF  +A + + K+P +S K  Y+ + H F+++ ++   FL +  E +G  +P  FL  ++  F + YG S    ++ P A                      F   L+E M+Y  S+P+  +K++ +  Q++E KG + D IEK + RGE+IE++VDKTE LQ ++  F+     L+R++W QN ++ + +G
Sbjct:    2 SQTDILYACVSYKGVCLVEHKIANGNFIDLARRLITKIPPTSKKI-YTSENHNFHYISENDLAFLCLCHEKLGVQIPSEFLSDIRQQFIRSYGQSFS--QNSPTATYDP------------------FIRVLEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQNKKLAIAIG 195          
BLAST of FC868706 vs. ExPASy Swiss-Prot
Match: SNC1_YEAST (Synaptobrevin homolog 1 OS=Saccharomyces cerevisiae GN=SNC1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 32/83 (38.55%), Postives = 53/83 (63.86%), Query Frame = 2
Query:  419 LKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKL 667
            L EH +    + +  S+ ++L+A+I +  GIM DNI KV +RGER+  + DK +NL   A  F+R   ++R+ MW ++L+MK+
Sbjct:   12 LSEHDEERPQNVQSKSRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMWYKDLKMKM 94          
The following BLAST results are available for this feature:
BLAST of FC868706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
VA714_ARATH2.085e-3031.78Vesicle-associated membrane protein 714 OS=Arabido... [more]
VAM7B_DICDI4.644e-3034.11Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VAMP7_MOUSE5.677e-2831.60Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_HUMAN9.683e-2831.60Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_BOVIN9.683e-2831.60Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_CHICK2.157e-2730.66Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_RAT2.817e-2731.13Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_PONAB3.680e-2731.13Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAM7A_DICDI4.973e-2430.88Vesicle-associated membrane protein 7A OS=Dictyost... [more]
SNC1_YEAST2.830e-1138.55Synaptobrevin homolog 1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionC31003G05EF AbioticL1 Citrus clementina cDNA clone C31003G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868706 ID=FC868706; Name=FC868706; organism=Citrus clementina; type=EST; length=692bp
GGAGTAGAGAAATTGGAAAGAATTCAATCAGAAAGGGTTGATTTACAGCT
TTGTTTCGAAAGGCACTGTCGTTTTAGCCGAGCACACGTCGTATTCCGGA
AATTTCAGTACCATTGCCATTCAATGTTTACAGAAATTGCCTGCGAGTAG
TAGCAAGTACACGTATTCATGCGATGGCCACACTTTTAACTTCCTCCTCG
ACTCTGGATTCGTATTTCTGGTTGTTGCTGATGAATCGGTTGGGAGAAGT
GTGCCGTTTGTTTTTCTCGAACGAGTCAAGGATGATTTTAAACAGCGGTA
TGGGGCGAGTATTCAGAATGAGGAATCACACCCCCTTGCTGATGATGATG
AGGATGATGATTTGTTTGAAGATCGATTTAGCATTGCCTATAATCTTGAC
AGAGAATTTGGGCCAAGGCTTAAGGAGCACATGCAGTATTGTATGAGCCA
CCCTGAGGAGATGAGCAAGCTTTCCAAATTAAAGGCTCAAATAACTGAGG
TCAAGGGGATTATGATGGACAATATTGAGAAGGTTTTGGATCGTGGGGAG
AGGATTGAGCTACTGGTGGATAAAACAGAGAACCTGCAATTCCAGGCTGA
CAGCTTCCAGAGACAAGGGAGGCAGTTACGGCGAAGGATGTGGCTGCAGA
ATCTGCAAATGAAGTTGATGGTGGGAGGAGCAGNTATTTGCC
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