FC868713

Overview
NameFC868713
Unique NameFC868713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9454 contig Ccv1_Contig9454:241..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_KLEP7 (L-threonine 3-dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=tdh PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.393e-17
Identity = 49/152 (32.24%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  220 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETMCLS 672
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC   +      P  G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E + +S
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGEDVLVS 170          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_KLEP3 (L-threonine 3-dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=tdh PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.393e-17
Identity = 49/152 (32.24%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  220 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETMCLS 672
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC   +      P  G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E + +S
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGEDVLVS 170          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_ALTMD (L-threonine 3-dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=tdh PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.393e-17
Identity = 46/142 (32.39%), Postives = 76/142 (53.52%), Query Frame = 1
Query:  202 IQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            +Q    P +G  D+L++++   ICG+D+H       +   +  P+V+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+ GR +LC   +        G+ A  +V PA   FK+PDN+S +  ++ +P    +H
Sbjct:   15 LQDTPKPEVGHNDLLIKIRKTAICGTDMHIYNWDEWSQNTIPVPVVVGHEYVGEVVGMGQEVKGFEVGDRVSGEGHITCGHCRNCRAGRVHLCRNTEGVGVNR-PGAFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVH 155          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_FRAP2 (L-threonine 3-dehydrogenase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=tdh PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 46/152 (30.26%), Postives = 82/152 (53.95%), Query Frame = 1
Query:  217 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETMCLS 672
            +P  G  DVL+++K   ICG+D+H     + +   +  PM+ GHE AG +   G+ V ++  GDRV+ E  + C +C +C+ G+ +LC +        V G+ A  +V PA   FK+PD++S +  +  +P+   +H     N+  E + ++
Sbjct:   21 MPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQATIPVPMITGHEFAGEVVAKGNGVTSVDVGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIGV-NVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGEDVLIT 171          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_XANOR (L-threonine 3-dehydrogenase OS=Xanthomonas oryzae pv. oryzae GN=tdh PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 51/172 (29.65%), Postives = 82/172 (47.67%), Query Frame = 1
Query:  157 EVNMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETMCLS 672
            E N   WL  V         +P+ GP +VL++++   ICG+D+H       +   +K  + IGHE  G + ++GS V     G RV+ E  I C  C +C+GGR +LCP         V+G+ A  +V PA   + +PD +  E  A  +P     H     ++  E + ++
Sbjct:    8 ETNKGIWLEQV--------PVPTPGPNEVLIKLEKTAICGTDLHIYLWDEWSQRTIKPGLTIGHEFVGRVAELGSAVTGYQVGQRVSAEGHIVCGHCRNCRGGRPHLCPNTMGIGV-NVNGAFAEYMVMPASNLWPIPDQIPSELAAFFDPYGNAAHCALEFDVIGEDVLIT 170          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_XANOM (L-threonine 3-dehydrogenase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=tdh PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 51/172 (29.65%), Postives = 82/172 (47.67%), Query Frame = 1
Query:  157 EVNMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETMCLS 672
            E N   WL  V         +P+ GP +VL++++   ICG+D+H       +   +K  + IGHE  G + ++GS V     G RV+ E  I C  C +C+GGR +LCP         V+G+ A  +V PA   + +PD +  E  A  +P     H     ++  E + ++
Sbjct:    8 ETNKGIWLEQV--------PVPTPGPNEVLIKLEKTAICGTDLHIYLWDEWSQRTIKPGLTIGHEFVGRVAELGSAVTGYQVGQRVSAEGHIVCGHCRNCRGGRPHLCPNTMGIGV-NVNGAFAEYMVMPASNLWPIPDQIPSELAAFFDPYGNAAHCALEFDVIGEDVLIT 170          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_VIBVY (L-threonine 3-dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=tdh PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  220 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            P LG  D+L+++K   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+GGR +LC            G  +  +V PA   FK+P N+S +  ++ +P    +H
Sbjct:   23 PVLGHNDLLIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRT-GCFSEYLVIPAFNAFKIPANISDDLASIFDPFGNAVH 157          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_VIBVU (L-threonine 3-dehydrogenase OS=Vibrio vulnificus GN=tdh PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  220 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            P LG  D+L+++K   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+GGR +LC            G  +  +V PA   FK+P N+S +  ++ +P    +H
Sbjct:   23 PVLGHNDLLIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRT-GCFSEYLVIPAFNAFKIPANISDDLASIFDPFGNAVH 157          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_SYMTH (L-threonine 3-dehydrogenase OS=Symbiobacterium thermophilum GN=tdh PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 50/157 (31.85%), Postives = 76/157 (48.41%), Query Frame = 1
Query:  202 IQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETMCLS 672
            +Q   +P++GP DVLV+++A  ICG+D H       +   VK P+ IGHE AG +  VG EV     GD V+ E  I C RC  C  G Y+LC   K        G+ A  V  P    +    ++  E  ++ EPL   +H     ++   ++ ++
Sbjct:   19 LQEVPIPTIGPRDVLVKVRAASICGTDYHIYTWDPWSAGRVKPPLTIGHELAGEVVAVGREVTACKVGDYVSAETHIVCNRCPRCHMGEYHLCENTKILGV-DTDGAFAEYVAVPEQNIWVNDKDIPFELQSIQEPLGNAVHTALNGDLTARSVLIT 174          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_LEGPL (L-threonine 3-dehydrogenase OS=Legionella pneumophila (strain Lens) GN=tdh PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 50/158 (31.65%), Postives = 79/158 (50.00%), Query Frame = 1
Query:  202 IQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETMCLS 672
            +Q   +P  G  DVL+++K   ICG+D+H       A   +  PM +GHE  G I +VG EV+ L  G RV+ E  I+C  C +C+ G+ +LC   +      P  G  A  +  PA     LPDN++ E+ A+ +P     H     ++  E + ++
Sbjct:   15 MQDIPVPEYGVNDVLIKIKRTAICGTDIHIYSWDEWAQATIPVPMTVGHEFYGEIVEVGKEVQGLKVGQRVSGEGHITCGFCRNCRAGKRHLCRNTLGVGVNRP--GCFAEYLALPATNVIALPDNITEEQAAILDPFGNAAHCALAFDVVGEDVLIT 170          
The following BLAST results are available for this feature:
BLAST of FC868713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
TDH_KLEP73.393e-1732.24L-threonine 3-dehydrogenase OS=Klebsiella pneumoni... [more]
TDH_KLEP33.393e-1732.24L-threonine 3-dehydrogenase OS=Klebsiella pneumoni... [more]
TDH_ALTMD3.393e-1732.39L-threonine 3-dehydrogenase OS=Alteromonas macleod... [more]
TDH_FRAP24.431e-1730.26L-threonine 3-dehydrogenase OS=Francisella philomi... [more]
TDH_XANOR5.787e-1729.65L-threonine 3-dehydrogenase OS=Xanthomonas oryzae ... [more]
TDH_XANOM5.787e-1729.65L-threonine 3-dehydrogenase OS=Xanthomonas oryzae ... [more]
TDH_VIBVY5.787e-1734.56L-threonine 3-dehydrogenase OS=Vibrio vulnificus (... [more]
TDH_VIBVU5.787e-1734.56L-threonine 3-dehydrogenase OS=Vibrio vulnificus G... [more]
TDH_SYMTH5.787e-1731.85L-threonine 3-dehydrogenase OS=Symbiobacterium the... [more]
TDH_LEGPL5.787e-1731.65L-threonine 3-dehydrogenase OS=Legionella pneumoph... [more]

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Properties
Property NameValue
Genbank descriptionC31003H02EF AbioticL1 Citrus clementina cDNA clone C31003H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868713 ID=FC868713; Name=FC868713; organism=Citrus clementina; type=EST; length=685bp
GAATCAAATCATATCCCTCATCCAGAATCAGAATAAATGGTAGCTTAAAA
TGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTTTTTGAAGGGT
AAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGAAAAGAAGGAT
GGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAA
GATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGATGTTTTAGTCA
GGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATTATCTCAAGACC
TTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTATGGTGATTGGGCACGA
GTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGC
CCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGCTGCTGGCGATGCGAT
CACTGCAAAGGAGGTCGATACAATTTGTGTCCAGAGATGAAATTTTTTGC
AACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGGTGCATCCTGCAG
ACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTGGAGGAAGGGGCTATG
TGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCGCCGTGCCAATATCGG
TCCTGAGACAATGTGCTTATCATGGGAGCAGGGCC
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