FC868713

Overview
NameFC868713
Unique NameFC868713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: YJJN_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yjjN OS=Escherichia coli (strain K12) GN=yjjN PE=3 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.148e-15
Identity = 49/148 (33.11%), Postives = 75/148 (50.68%), Query Frame = 1
Query:  214 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLP-DNVSLEEGAMCEPLSVGLHACRRANIGP 654
            E+P  G  + L+++K+VGICG+D+H     +        P V+GHE  G I  +G  +  L  G +VA+ P ++C +C  CK GR N C ++         G      V  A++   LP D +  +  A+ EP ++  HA RRA I P
Sbjct:   21 EIPIPGDNEALIKIKSVGICGTDIHAWGGNQP---FFSYPRVLGHEICGEIVGLGKNIADLKNGQQVAVIPYVACQQCPACKSGRTNCCEKISVIGVHQDGGFSEYLSVPVANI---LPADGIDPQAAALIEPFAISAHAVRRAAIAP 162          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_SINMW (L-threonine 3-dehydrogenase OS=Sinorhizobium medicae (strain WSM419) GN=tdh PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.148e-15
Identity = 50/138 (36.23%), Postives = 72/138 (52.17%), Query Frame = 1
Query:  217 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            +P +GP DVL+R++   ICG+DVH     + A   +  PMV+GHE  G I +VG  V     G+RV+ E  I C +C +C+ GR +LC   +      P  GS A  V  P      +PD+V  E  A+ +P    +H
Sbjct:   24 VPEVGPNDVLIRVRKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFMGEIVEVGPAVTKHHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFAEFVCLPEYNVVSIPDDVPDEIAAIFDPFGNAVH 159          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_PSYIN (L-threonine 3-dehydrogenase OS=Psychromonas ingrahamii (strain 37) GN=tdh PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 44/151 (29.14%), Postives = 76/151 (50.33%), Query Frame = 1
Query:  220 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETMCLS 672
            P  G  D+L+++    ICG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +V PA   FK+P  +S +  ++ +P    +H+    ++  E + ++
Sbjct:   23 PEPGHNDLLIKIHKTAICGTDIHIYNWDEWSQNTIPVPMVVGHEYVGEVVGMGQEVRGFSVGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRT-GAFAEYLVIPAFNAFKIPAGISDDLASIFDPFGNAVHSALSFDVVGEDVLIT 172          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_MESSB (L-threonine 3-dehydrogenase OS=Mesorhizobium sp. (strain BNC1) GN=tdh PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 50/139 (35.97%), Postives = 69/139 (49.64%), Query Frame = 1
Query:  217 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVH--GSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            LP +GP DVL++++   ICG+DVH       A   V  P+V GHE  G +  VGS V     G RV+ E  I C  C +C+ GR +LC          VH  G+ A  +  P      +PD+V  E  A+ +PL   +H
Sbjct:   24 LPEIGPNDVLIKVRKAAICGTDVHIWNWDEWARKTVPVPLVTGHEFVGEVVDVGSAVTEYRIGQRVSGEGHIVCGHCRNCRAGRGHLCRNTLGVG---VHRPGAFAEYISLPQHNVVAIPDDVPDEIAAIFDPLGNAVH 159          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_BACA2 (L-threonine 3-dehydrogenase OS=Bacillus amyloliquefaciens (strain FZB42) GN=tdh PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 47/145 (32.41%), Postives = 73/145 (50.34%), Query Frame = 1
Query:  193 TLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            TLK  P  +PS+   +VL++++A  ICG+DVH     + A   +K P V GHE +G++ + G  V  +  GD V+ E    C  C  C  G++++C   K        GS A  V  PA   +K P ++     ++ EPL   +H
Sbjct:   18 TLKEIP--IPSINENEVLIKVQAASICGTDVHIYNWDQWAQKRIKTPQVFGHEFSGIVAETGKHVTNVKTGDYVSAETHFVCGTCVPCLTGKHHVCTHTKILGVDTA-GSFAEYVKVPARNVWKNPADMDPAVASVQEPLGNAVH 159          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_THETN (L-threonine 3-dehydrogenase OS=Thermoanaerobacter tengcongensis GN=tdh PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.240e-15
Identity = 44/138 (31.88%), Postives = 70/138 (50.72%), Query Frame = 1
Query:  214 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            E+P +GP +VL+++KA  ICG+DVH       A   +K P  +GHE  G + ++G  V ++  GD V+ E  I C +C  C+ G  ++C E          G+ A  +  P    +    N+ LE  ++ EPL   +H
Sbjct:   23 EIPKIGPDEVLIKVKATSICGTDVHIYVWNEWAKSRIKPPKTMGHEFVGEVVEIGENVTSVKVGDLVSAETHIVCGKCRACRTGNAHIC-ENTLILGVDTDGAFAEYIKVPESNVWINDKNIPLEILSIQEPLGNAVH 159          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_PARUW (L-threonine 3-dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=tdh PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14
Identity = 49/145 (33.79%), Postives = 73/145 (50.34%), Query Frame = 1
Query:  238 DVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETMCLS 672
            +VL++     ICG+DVH  K    A   V  P+VIGHE  G I + G  VK    G+RV  E  I C +C +C+ GR ++C   K      + G  A   V PA+  F LP ++S + GA+ +P    +H     N+  E + ++
Sbjct:   28 EVLIKTIKTSICGTDVHIYKWDAWAQKNVPVPLVIGHEFIGEIAEFGKNVKGFKIGERVCGEGHIVCNQCPNCRMGRKHVCMHTKGLGY-HISGCFAEYFVLPAENVFSLPPSISDDLGAIFDPYGNAVHTTLAFNLIGEDVLIT 171          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_BACSU (L-threonine 3-dehydrogenase OS=Bacillus subtilis GN=tdh PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14
Identity = 43/137 (31.39%), Postives = 70/137 (51.09%), Query Frame = 1
Query:  217 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            +P +  ++VL+++KA  ICG+DVH     + A   +K P V GHE +G++E VG  V ++  G+ V+ E  I C  C  C  G+ ++C            G  A  V  PAD  ++ P ++     ++ EPL   +H
Sbjct:   25 IPEIDKHEVLIKVKAASICGTDVHIYNWDQWARQRIKTPYVFGHEFSGIVEGVGENVSSVKVGEYVSAETHIVCGECVPCLTGKSHVCTNTAIIGVDTA-GCFAEYVKVPADNIWRNPADMDPSIASIQEPLGNAVH 160          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_STRAW (L-threonine 3-dehydrogenase OS=Streptomyces avermitilis GN=tdh PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 49/158 (31.01%), Postives = 75/158 (47.47%), Query Frame = 1
Query:  154 EEVNMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            E+     WLM V          P +GP DVL+++   GICG+D+H       A   V+ P+V+GHE  G + + G +V  +  GDRV+ E  + C +C +C+ GR +LC            G+ A  V  PA   +     V L+  A+ +P    +H
Sbjct:    7 EKAEPGLWLMDVPE--------PEIGPGDVLIKVLRTGICGTDLHIRSWDGWAQQAVRTPLVLGHEFVGEVVETGRDVVDIKAGDRVSGEGHLVCGKCRNCQAGRRHLCRATVGLGVGR-DGAFAEYVALPAANVWVHRVPVDLDVAAIFDPFGNAVH 155          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_RHILO (L-threonine 3-dehydrogenase OS=Rhizobium loti GN=tdh PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 46/138 (33.33%), Postives = 68/138 (49.28%), Query Frame = 1
Query:  217 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            +P +GP DVL++++   ICG+DVH     + A   V  PMV GHE  G +   G+ V     G RV+ E  I C  C +C+ GR +LC   +      P  G+    +  P      +PD+V  E  A+ +PL   +H
Sbjct:   24 VPEIGPNDVLIKIRKTAICGTDVHIYNWDQWAQKTVPVPMVTGHEFVGTVADFGAAVTEYKVGQRVSGEGHIVCGHCRNCRAGRGHLCRNTLGVGVNRP--GAFGEYLAIPQHNVVPIPDDVPDEIAAIFDPLGNAVH 159          
The following BLAST results are available for this feature:
BLAST of FC868713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
YJJN_ECOLI4.148e-1533.11Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
TDH_SINMW4.148e-1536.23L-threonine 3-dehydrogenase OS=Sinorhizobium medic... [more]
TDH_PSYIN7.075e-1529.14L-threonine 3-dehydrogenase OS=Psychromonas ingrah... [more]
TDH_MESSB7.075e-1535.97L-threonine 3-dehydrogenase OS=Mesorhizobium sp. (... [more]
TDH_BACA27.075e-1532.41L-threonine 3-dehydrogenase OS=Bacillus amylolique... [more]
TDH_THETN9.240e-1531.88L-threonine 3-dehydrogenase OS=Thermoanaerobacter ... [more]
TDH_PARUW1.576e-1433.79L-threonine 3-dehydrogenase OS=Protochlamydia amoe... [more]
TDH_BACSU1.576e-1431.39L-threonine 3-dehydrogenase OS=Bacillus subtilis G... [more]
TDH_STRAW2.688e-1431.01L-threonine 3-dehydrogenase OS=Streptomyces avermi... [more]
TDH_RHILO2.688e-1433.33L-threonine 3-dehydrogenase OS=Rhizobium loti GN=t... [more]

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Properties
Property NameValue
Genbank descriptionC31003H02EF AbioticL1 Citrus clementina cDNA clone C31003H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868713 ID=FC868713; Name=FC868713; organism=Citrus clementina; type=EST; length=685bp
GAATCAAATCATATCCCTCATCCAGAATCAGAATAAATGGTAGCTTAAAA
TGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTTTTTGAAGGGT
AAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGAAAAGAAGGAT
GGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAA
GATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGATGTTTTAGTCA
GGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATTATCTCAAGACC
TTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTATGGTGATTGGGCACGA
GTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGC
CCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGCTGCTGGCGATGCGAT
CACTGCAAAGGAGGTCGATACAATTTGTGTCCAGAGATGAAATTTTTTGC
AACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGGTGCATCCTGCAG
ACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTGGAGGAAGGGGCTATG
TGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCGCCGTGCCAATATCGG
TCCTGAGACAATGTGCTTATCATGGGAGCAGGGCC
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