FC868713

Overview
NameFC868713
Unique NameFC868713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9454 contig Ccv1_Contig9454:241..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_SILPO (L-threonine 3-dehydrogenase OS=Silicibacter pomeroyi GN=tdh PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 46/137 (33.58%), Postives = 72/137 (52.55%), Query Frame = 1
Query:  217 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            +P +GP DVL+++K  GICG+D+H       A   V  PM+ GHE AG I ++G +V  L  G RV+ E  +        + G+++L P  +      V G+ A  +  PA     LP+++  E GA+ +PL   +H
Sbjct:   20 VPEIGPDDVLIKIKKTGICGTDIHIWNWDEWAAHTVPVPMITGHEFAGEIVELGRDVTGLSIGQRVSGEGHLIGTESRQSRAGKFHLDPGTRGIGV-NVQGAFAQYLRLPAFNVVPLPEDIPDEIGAILDPLGNAVH 155          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_STRGG (L-threonine 3-dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 48/151 (31.79%), Postives = 71/151 (47.02%), Query Frame = 1
Query:  175 WLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            WLM V          P  GP DVL+++   GICG+D+H       A   V  P+++GHE  G +  +GS+V  +  GD V+ E  + C +C +C  GR +LC            G+ A  VV PA   +     V L+  A+ +P    +H
Sbjct:   14 WLMDVPE--------PEYGPTDVLIKVLRTGICGTDLHIRAYDGWAQQAVTTPLILGHEFVGEVAAIGSDVADIATGDLVSGEGHLVCGKCRNCLAGRRHLCRSTVGLGVGR-DGAFAEYVVLPASNVWVHRVPVDLDIAAIFDPFGNAVH 155          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_BACLD (L-threonine 3-dehydrogenase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 44/137 (32.12%), Postives = 69/137 (50.36%), Query Frame = 1
Query:  217 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            +P +  ++VL+++KA  ICG+DVH       A   VK P V GHE +G + +VG  V T+  G+ V+ E  I C +C  C  G+ ++C +          G  A  V  PA   +K P  +  +  ++ EPL   +H
Sbjct:   24 IPKIDKHEVLIKVKAASICGTDVHIYNWDEWAKSRVKPPYVFGHEFSGEVVQVGENVTTVKEGEYVSAETHIVCGKCLPCLTGKEHVCKKTLILGV-DTDGCFAEYVKMPAANIWKNPAGMPEDLASIQEPLGNAVH 159          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: BDH2_YEAST (Probable (R,R)-butanediol dehydrogenase 2 OS=Saccharomyces cerevisiae GN=BDH2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 51/161 (31.68%), Postives = 75/161 (46.58%), Query Frame = 1
Query:  226 LGPYDVLVRMKAVGICGSDVHYL---KTLRCADFVVKE------PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISC---------------WRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACR 636
            + P ++++ ++  GICG+D+H           D    E      P  +GHE AG + +VG  VK L  GD+V +EP  +C               W C  CK G YN+C  +         G  A +VV     C+K+PD V L+  A+ +PL+V  HA R
Sbjct:   24 VAPDELVIDIEWCGICGTDLHEYTDGPIFFPEDGHTHEISHNPLPQAMGHEMAGTVLEVGPGVKNLKVGDKVVVEPTGTCRDRYRWPLSPNVDKEW-CAACKKGYYNICSYLGLCGAGVQSGGFAERVVMNESHCYKVPDFVPLDVAALIQPLAVCWHAIR 183          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: BDH1_YEAST ((R,R)-butanediol dehydrogenase OS=Saccharomyces cerevisiae GN=BDH1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 49/158 (31.01%), Postives = 73/158 (46.20%), Query Frame = 1
Query:  238 DVLVRMKAVGICGSDVHYLKTLRCADFVVKE-----------PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISC-----WR---------CDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACR 636
            +V++ +   GICGSD+H  + L    F+ K+           P+ +GHE +G++ KVG +V  +  GD V ++   SC     W          CD C+ G  NLC    F     + G  A QVV        +P  + L+  A+ EPLSV  HA +
Sbjct:   28 EVIIDVSWCGICGSDLH--EYLDGPIFMPKDGECHKLSNAALPLAMGHEMSGIVSKVGPKVTKVKVGDHVVVDAASSCADLHCWPHSKFYNSKPCDACQRGSENLCTHAGFVGLGVISGGFAEQVVVSQHHIIPVPKEIPLDVAALVEPLSVTWHAVK 183          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_STRCO (L-threonine 3-dehydrogenase OS=Streptomyces coelicolor GN=tdh PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 42/136 (30.88%), Postives = 67/136 (49.26%), Query Frame = 1
Query:  220 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            P++G  DVL+++   GICG+D+H       A   ++ P+V+GHE  G +   G +V  +  GDRV+ E  + C +C +C  GR +LC            G+ A  V  PA   +     V L+  A+ +P    +H
Sbjct:   21 PTIGSGDVLIKVLRTGICGTDLHIRAWDGWAQQAIRTPLVVGHEFVGEVVDTGRDVTDIKAGDRVSGEGHLVCGKCRNCLAGRRHLCRATVGLGVGR-DGAFAEYVALPASNVWVHRVPVDLDVAAIFDPFGNAVH 155          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: ADH2_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus GN=adh PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 47/138 (34.06%), Postives = 74/138 (53.62%), Query Frame = 1
Query:  196 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKE--PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI--SCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGA 597
            L+I+  E P L   +VLV+++A G+C +D+H        D+ +K   P++ GHE  G++ +V   VK++  GDRV + P +  +C  C++C  G+  LCP  +      V G  A     PAD   K+PDN+   E A
Sbjct:   13 LEIKEVERPKLEEGEVLVKIEACGVCHTDLHAAH----GDWPIKPKLPLIPGHEGVGIVVEVAKGVKSIKVGDRVGI-PWLYSACGECEYCLTGQETLCPH-QLNGGYSVDGGYAEYCKAPADYVAKIPDNLDPVEVA 144          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_PROAC (L-threonine 3-dehydrogenase OS=Propionibacterium acnes GN=tdh PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 48/138 (34.78%), Postives = 69/138 (50.00%), Query Frame = 1
Query:  220 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCF--KLPDNVSLEEGAMCEPLSVGLH 627
            P  GP DV+V++   GICG+DVH  K    A   V  P+V+GHE  G I ++GSEV  L  G  V+ E    C RC  C  G+ +LC   +      V+G+     V PA   +   +PD +  +  A+ +P    +H
Sbjct:   21 PVAGPNDVIVKVMRTGICGTDVHIDKWDGWAAKTVHTPLVLGHEFCGEIVELGSEVNDLEVGQFVSGEGHYVCGRCRACLAGKRHLCRNTQGIGY-AVNGAYCQYFVMPAGNVWVHHIPD-LDPDVAAIFDPFGNAVH 156          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: ADH_SCHPO (Alcohol dehydrogenase OS=Schizosaccharomyces pombe GN=adh1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 51/168 (30.36%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  184 GVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVV--KEPMVIGHECAGVIEKVGSEVKTLVPGDRVALE-PGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGLHACRRANIGP-ETMCL 669
            G   +K +   +   G  +VLV +K  G+C +D+H L+     D+ +  K P++ GHE AGV+ KVG+ V  L  GDRV ++    SC  C++C      +CP ++  +   V G+  +  +  A     +P++V LE  A  MC  ++    A + + +GP E +C+
Sbjct:   17 GPENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQ----GDWPLPAKMPLIGGHEGAGVVVKVGAGVTRLKIGDRVGVKWMNSSCGNCEYCMKAEETICPHIQ-LSGYTVDGTFQHYCIANATHATIIPESVPLEVAAPIMCAGITC-YRALKESKVGPGEWICI 178          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: ADH_STAAW (Alcohol dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=adh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 44/129 (34.11%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  196 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNV 579
            + I+  +L +L P + LV+ +  G+C +D+H    ++ ADF     + +GHE  G + +V  +V++L  GDRV++     SC RC++C  GR  LC  +K  A   V G++A QV+  AD   K+P+ +
Sbjct:   12 VSIEDKKLRALKPGEALVQTEYCGVCHTDLH----VKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVK-NAGYTVDGAMAEQVIVTADYAVKVPEKL 135          
The following BLAST results are available for this feature:
BLAST of FC868713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
TDH_SILPO5.989e-1433.58L-threonine 3-dehydrogenase OS=Silicibacter pomero... [more]
TDH_STRGG7.822e-1431.79L-threonine 3-dehydrogenase OS=Streptomyces griseu... [more]
TDH_BACLD7.822e-1432.12L-threonine 3-dehydrogenase OS=Bacillus lichenifor... [more]
BDH2_YEAST2.972e-1331.68Probable (R,R)-butanediol dehydrogenase 2 OS=Sacch... [more]
BDH1_YEAST5.070e-1331.01(R,R)-butanediol dehydrogenase OS=Saccharomyces ce... [more]
TDH_STRCO1.129e-1230.88L-threonine 3-dehydrogenase OS=Streptomyces coelic... [more]
ADH2_BACST1.475e-1234.06Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
TDH_PROAC4.292e-1234.78L-threonine 3-dehydrogenase OS=Propionibacterium a... [more]
ADH_SCHPO4.292e-1230.36Alcohol dehydrogenase OS=Schizosaccharomyces pombe... [more]
ADH_STAAW5.606e-1234.11Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]

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Properties
Property NameValue
Genbank descriptionC31003H02EF AbioticL1 Citrus clementina cDNA clone C31003H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868713 ID=FC868713; Name=FC868713; organism=Citrus clementina; type=EST; length=685bp
GAATCAAATCATATCCCTCATCCAGAATCAGAATAAATGGTAGCTTAAAA
TGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTTTTTGAAGGGT
AAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGAAAAGAAGGAT
GGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAA
GATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGATGTTTTAGTCA
GGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATTATCTCAAGACC
TTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTATGGTGATTGGGCACGA
GTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGC
CCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGCTGCTGGCGATGCGAT
CACTGCAAAGGAGGTCGATACAATTTGTGTCCAGAGATGAAATTTTTTGC
AACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGGTGCATCCTGCAG
ACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTGGAGGAAGGGGCTATG
TGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCGCCGTGCCAATATCGG
TCCTGAGACAATGTGCTTATCATGGGAGCAGGGCC
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