FC868713

Overview
NameFC868713
Unique NameFC868713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9454 contig Ccv1_Contig9454:241..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: ADH_STAAS (Alcohol dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=adh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 44/129 (34.11%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  196 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNV 579
            + I+  +L +L P + LV+ +  G+C +D+H    ++ ADF     + +GHE  G + +V  +V++L  GDRV++     SC RC++C  GR  LC  +K  A   V G++A QV+  AD   K+P+ +
Sbjct:   12 VSIEDKKLRALKPGEALVQTEYCGVCHTDLH----VKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVK-NAGYTVDGAMAEQVIVTADYAVKVPEKL 135          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: ADH_STAAR (Alcohol dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=adh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 44/129 (34.11%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  196 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNV 579
            + I+  +L +L P + LV+ +  G+C +D+H    ++ ADF     + +GHE  G + +V  +V++L  GDRV++     SC RC++C  GR  LC  +K  A   V G++A QV+  AD   K+P+ +
Sbjct:   12 VSIEDKKLRALKPGEALVQTEYCGVCHTDLH----VKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVK-NAGYTVDGAMAEQVIVTADYAVKVPEKL 135          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: ADH_STAAN (Alcohol dehydrogenase OS=Staphylococcus aureus (strain N315) GN=adh PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 44/129 (34.11%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  196 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNV 579
            + I+  +L +L P + LV+ +  G+C +D+H    ++ ADF     + +GHE  G + +V  +V++L  GDRV++     SC RC++C  GR  LC  +K  A   V G++A QV+  AD   K+P+ +
Sbjct:   12 VSIEDKKLRALKPGEALVQTEYCGVCHTDLH----VKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVK-NAGYTVDGAMAEQVIVTADYAVKVPEKL 135          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: ADH_STAAM (Alcohol dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=adh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 44/129 (34.11%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  196 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNV 579
            + I+  +L +L P + LV+ +  G+C +D+H    ++ ADF     + +GHE  G + +V  +V++L  GDRV++     SC RC++C  GR  LC  +K  A   V G++A QV+  AD   K+P+ +
Sbjct:   12 VSIEDKKLRALKPGEALVQTEYCGVCHTDLH----VKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVK-NAGYTVDGAMAEQVIVTADYAVKVPEKL 135          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: ADH_STAAC (Alcohol dehydrogenase OS=Staphylococcus aureus (strain COL) GN=adh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 44/129 (34.11%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  196 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNV 579
            + I+  +L +L P + LV+ +  G+C +D+H    ++ ADF     + +GHE  G + +V  +V++L  GDRV++     SC RC++C  GR  LC  +K  A   V G++A QV+  AD   K+P+ +
Sbjct:   12 VSIEDKKLRALKPGEALVQTEYCGVCHTDLH----VKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVK-NAGYTVDGAMAEQVIVTADYAVKVPEKL 135          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: ADH_STAAB (Alcohol dehydrogenase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=adh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 44/129 (34.11%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  196 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNV 579
            + I+  +L +L P + LV+ +  G+C +D+H    ++ ADF     + +GHE  G + +V  +V++L  GDRV++     SC RC++C  GR  LC  +K  A   V G++A QV+  AD   K+P+ +
Sbjct:   12 VSIEDKKLRALKPGEALVQTEYCGVCHTDLH----VKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVK-NAGYTVDGAMAEQVIVTADYAVKVPEKL 135          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: ADH_STAA8 (Alcohol dehydrogenase OS=Staphylococcus aureus (strain NCTC 8325) GN=adh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 44/129 (34.11%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  196 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNV 579
            + I+  +L +L P + LV+ +  G+C +D+H    ++ ADF     + +GHE  G + +V  +V++L  GDRV++     SC RC++C  GR  LC  +K  A   V G++A QV+  AD   K+P+ +
Sbjct:   12 VSIEDKKLRALKPGEALVQTEYCGVCHTDLH----VKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVK-NAGYTVDGAMAEQVIVTADYAVKVPEKL 135          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: ADH_STAA3 (Alcohol dehydrogenase OS=Staphylococcus aureus (strain USA300) GN=adh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 44/129 (34.11%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  196 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNV 579
            + I+  +L +L P + LV+ +  G+C +D+H    ++ ADF     + +GHE  G + +V  +V++L  GDRV++     SC RC++C  GR  LC  +K  A   V G++A QV+  AD   K+P+ +
Sbjct:   12 VSIEDKKLRALKPGEALVQTEYCGVCHTDLH----VKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVK-NAGYTVDGAMAEQVIVTADYAVKVPEKL 135          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_SACEN (L-threonine 3-dehydrogenase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=tdh PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 43/136 (31.62%), Postives = 67/136 (49.26%), Query Frame = 1
Query:  220 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            P+ G  D++V++   GICG+D+H       A   V  P+VIGHE AG +  VGS V     GD V+ E  + C  C +C+ GR +LC   +       +G+ A   V P    +   ++V  +  A+ +P    +H
Sbjct:   21 PTPGANDIVVQVFRTGICGTDLHIDSWDEWAARTVPTPLVIGHEFAGEVVAVGSAVTQAQVGDFVSGEGHLVCGTCRNCRAGRRHLCANTRGLGVHH-NGAFAEYAVLPEQNVWVHREHVDPDVAAIFDPFGNAVH 155          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: ADHP_ECOLI (Alcohol dehydrogenase, propanol-preferring OS=Escherichia coli (strain K12) GN=adhP PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 41/122 (33.61%), Postives = 66/122 (54.10%), Query Frame = 1
Query:  217 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNV 579
            L SL   + L++M+  G+C +D+H    ++  DF  K  +++GHE  GV+ +VG  V +L PGDR ++      C  C++C  G   LC  +K  A   V G +A + +  AD   K+PD +
Sbjct:   19 LRSLKHGEALLKMECCGVCHTDLH----VKNGDFGDKTGVILGHEGIGVVAEVGPGVTSLKPGDRASVAWFYEGCGHCEYCNSGNETLCRSVK-NAGYSVDGGMAEECIVVADYAVKVPDGL 135          
The following BLAST results are available for this feature:
BLAST of FC868713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
ADH_STAAS5.606e-1234.11Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAR5.606e-1234.11Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAN5.606e-1234.11Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAM5.606e-1234.11Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAC5.606e-1234.11Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAB5.606e-1234.11Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAA85.606e-1234.11Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAA35.606e-1234.11Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
TDH_SACEN9.562e-1231.62L-threonine 3-dehydrogenase OS=Saccharopolyspora e... [more]
ADHP_ECOLI1.631e-1133.61Alcohol dehydrogenase, propanol-preferring OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC31003H02EF AbioticL1 Citrus clementina cDNA clone C31003H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868713 ID=FC868713; Name=FC868713; organism=Citrus clementina; type=EST; length=685bp
GAATCAAATCATATCCCTCATCCAGAATCAGAATAAATGGTAGCTTAAAA
TGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTTTTTGAAGGGT
AAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGAAAAGAAGGAT
GGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAA
GATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGATGTTTTAGTCA
GGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATTATCTCAAGACC
TTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTATGGTGATTGGGCACGA
GTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGC
CCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGCTGCTGGCGATGCGAT
CACTGCAAAGGAGGTCGATACAATTTGTGTCCAGAGATGAAATTTTTTGC
AACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGGTGCATCCTGCAG
ACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTGGAGGAAGGGGCTATG
TGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCGCCGTGCCAATATCGG
TCCTGAGACAATGTGCTTATCATGGGAGCAGGGCC
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