FC868713

Overview
NameFC868713
Unique NameFC868713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9454 contig Ccv1_Contig9454:241..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: ADH7_RAT (Alcohol dehydrogenase class 4 mu/sigma chain OS=Rattus norvegicus GN=Adh7 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 40/105 (38.10%), Postives = 56/105 (53.33%), Query Frame = 1
Query:  169 AAWLMGVNT-LKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLC 480
            AA L G N    I+  E+      +V V++ A GICG+D H +K       V K P+++GHE  G++E VG EV T+ PGD+V       C  C+ C+    NLC
Sbjct:   12 AAVLWGTNQPFSIEDIEVAPPKAKEVRVKILATGICGTDDHVIK----GTMVSKFPVIVGHEAVGIVESVGEEVTTVRPGDKVIPLFLPQCRECNPCRNPEGNLC 112          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 46/145 (31.72%), Postives = 70/145 (48.28%), Query Frame = 1
Query:  211 FELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVAL-EPGISCWRCDHCKGGRYNLCPEM------KFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSV 618
            F   + G  DV  ++   GIC +D+   K       +   P+V GHE  GV+ +VG++VK    GD+V +     SC  CD C  G  N CP+M      K F     HG  ++ +V   D   ++PDN+ L+  A  +C  ++V
Sbjct:   26 FSRRATGEKDVRFKVLFCGICHTDLSMAKN---EWGLTTYPLVPGHEIVGVVTEVGAKVKKFNAGDKVGVGYMAGSCRSCDSCNDGDENYCPKMILTSGAKNFDDTMTHGGYSDHMVCAEDFIIRIPDNLPLDGAAPLLCAGVTV 167          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: DOIAD_STRRY (2-deoxy-scyllo-inosamine dehydrogenase OS=Streptomyces rimosus subsp. paromomycinus GN=parE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 43/142 (30.28%), Postives = 69/142 (48.59%), Query Frame = 1
Query:  214 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRR 639
            ++P   P + LV++    ICGSD+ + K +         P+V GHE +G + + G     LV G  V  +  ++C  C HC  G+  LC +++        G+ A  +  P     +LP+ +SL E    EPL+V L+A  R
Sbjct:   18 DVPEPAPGEALVKLAYNSICGSDLSFYKGVWHG---FTYPVVPGHEWSGTVVEAGGGAADLV-GQNVVGDLTVACGSCRHCTVGKPTLCADLQELGFTR-DGACAEYMTVPTGNLHRLPEGLSLREATQVEPLAVALNAVDR 154          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: ADH6_RAT (Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Adh6 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 34/103 (33.01%), Postives = 55/103 (53.40%), Query Frame = 1
Query:  196 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFAT 504
            L I+  E+      +V ++M A G+CG+D+ +L T   + F    PM++GHE  G++E VG  V ++  GD+V L     C  C  C   + N+C E++   T
Sbjct:   22 LAIEEIEVAPPKAKEVRIKMVATGVCGTDIKHLDTQELSKFC---PMIMGHEGVGIVESVGEGVSSVRTGDKVILLCIPQCGECKTCLNSKNNICTEIRLSKT 121          
The following BLAST results are available for this feature:
BLAST of FC868713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
ADH7_RAT1.631e-1138.10Alcohol dehydrogenase class 4 mu/sigma chain OS=Ra... [more]
CADH7_ARATH3.633e-1131.72Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
DOIAD_STRRY4.745e-1130.282-deoxy-scyllo-inosamine dehydrogenase OS=Streptom... [more]
ADH6_RAT6.198e-1133.01Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Ad... [more]

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Properties
Property NameValue
Genbank descriptionC31003H02EF AbioticL1 Citrus clementina cDNA clone C31003H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868713 ID=FC868713; Name=FC868713; organism=Citrus clementina; type=EST; length=685bp
GAATCAAATCATATCCCTCATCCAGAATCAGAATAAATGGTAGCTTAAAA
TGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTTTTTGAAGGGT
AAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGAAAAGAAGGAT
GGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAA
GATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGATGTTTTAGTCA
GGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATTATCTCAAGACC
TTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTATGGTGATTGGGCACGA
GTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGC
CCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGCTGCTGGCGATGCGAT
CACTGCAAAGGAGGTCGATACAATTTGTGTCCAGAGATGAAATTTTTTGC
AACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGGTGCATCCTGCAG
ACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTGGAGGAAGGGGCTATG
TGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCGCCGTGCCAATATCGG
TCCTGAGACAATGTGCTTATCATGGGAGCAGGGCC
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