FC868713

Overview
NameFC868713
Unique NameFC868713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9454 contig Ccv1_Contig9454:241..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_THET2 (L-threonine 3-dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=tdh PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 50/137 (36.50%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  217 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            +P  GP ++LVR++A  ICG+D+H  K    A   ++ P+V GHE +GV+E VG  VK    GD V+LE  + C  C  C+ G Y++C   K        G  A  VV PA+  +  P ++  E  A+ EP    +H
Sbjct:   20 VPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVKRPQVGDHVSLESHVVCHACPACRTGNYHVCLNTKILGVDR-DGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVH 155          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_SALTI (L-threonine 3-dehydrogenase OS=Salmonella typhi GN=tdh PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 50/151 (33.11%), Postives = 79/151 (52.32%), Query Frame = 1
Query:  220 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETMCLS 672
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E + +S
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGEDVLVS 170          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_CITK8 (L-threonine 3-dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=tdh PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 51/153 (33.33%), Postives = 82/153 (53.59%), Query Frame = 1
Query:  217 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETMCLS 672
            +P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E + +S
Sbjct:   20 VPEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFRIGDRVSGEGHITCGHCRNCRGGRTHLCRNTLGVGVNRP--GCFAEYLVLPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGEDVLVS 170          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_AERHH (L-threonine 3-dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=tdh PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 50/137 (36.50%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  220 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            P LG  D+L++++   ICG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC   +      P  G+ A  +V PA   FKLPDNV  E  A+ +P    +H
Sbjct:   21 PELGHNDLLIKIRKTAICGTDIHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVRGFAVGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRP--GAFAEYLVIPAFNAFKLPDNVPDELAAIFDPFGNAVH 155          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_SALAR (L-threonine 3-dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=tdh PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 50/151 (33.11%), Postives = 79/151 (52.32%), Query Frame = 1
Query:  220 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETMCLS 672
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E + +S
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGEDVLVS 170          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_ENTS8 (L-threonine 3-dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=tdh PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 50/151 (33.11%), Postives = 79/151 (52.32%), Query Frame = 1
Query:  220 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETMCLS 672
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E + +S
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGEDVLVS 170          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_ENT38 (L-threonine 3-dehydrogenase OS=Enterobacter sp. (strain 638) GN=tdh PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 50/151 (33.11%), Postives = 79/151 (52.32%), Query Frame = 1
Query:  220 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETMCLS 672
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E + +S
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGEDVLVS 170          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_SALTY (L-threonine 3-dehydrogenase OS=Salmonella typhimurium GN=tdh PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18
Identity = 50/151 (33.11%), Postives = 79/151 (52.32%), Query Frame = 1
Query:  220 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETMCLS 672
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E + +S
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGEDVLVS 170          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_SALSV (L-threonine 3-dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=tdh PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18
Identity = 50/151 (33.11%), Postives = 79/151 (52.32%), Query Frame = 1
Query:  220 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETMCLS 672
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E + +S
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGEDVLVS 170          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_SALPK (L-threonine 3-dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=tdh PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18
Identity = 50/151 (33.11%), Postives = 79/151 (52.32%), Query Frame = 1
Query:  220 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETMCLS 672
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E + +S
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGEDVLVS 170          
The following BLAST results are available for this feature:
BLAST of FC868713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
TDH_THET22.350e-1836.50L-threonine 3-dehydrogenase OS=Thermus thermophilu... [more]
TDH_SALTI2.350e-1833.11L-threonine 3-dehydrogenase OS=Salmonella typhi GN... [more]
TDH_CITK82.350e-1833.33L-threonine 3-dehydrogenase OS=Citrobacter koseri ... [more]
TDH_AERHH2.350e-1836.50L-threonine 3-dehydrogenase OS=Aeromonas hydrophil... [more]
TDH_SALAR3.069e-1833.11L-threonine 3-dehydrogenase OS=Salmonella arizonae... [more]
TDH_ENTS83.069e-1833.11L-threonine 3-dehydrogenase OS=Enterobacter sakaza... [more]
TDH_ENT383.069e-1833.11L-threonine 3-dehydrogenase OS=Enterobacter sp. (s... [more]
TDH_SALTY4.008e-1833.11L-threonine 3-dehydrogenase OS=Salmonella typhimur... [more]
TDH_SALSV4.008e-1833.11L-threonine 3-dehydrogenase OS=Salmonella schwarze... [more]
TDH_SALPK4.008e-1833.11L-threonine 3-dehydrogenase OS=Salmonella paratyph... [more]

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Properties
Property NameValue
Genbank descriptionC31003H02EF AbioticL1 Citrus clementina cDNA clone C31003H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868713 ID=FC868713; Name=FC868713; organism=Citrus clementina; type=EST; length=685bp
GAATCAAATCATATCCCTCATCCAGAATCAGAATAAATGGTAGCTTAAAA
TGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTTTTTGAAGGGT
AAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGAAAAGAAGGAT
GGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAA
GATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGATGTTTTAGTCA
GGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATTATCTCAAGACC
TTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTATGGTGATTGGGCACGA
GTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGC
CCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGCTGCTGGCGATGCGAT
CACTGCAAAGGAGGTCGATACAATTTGTGTCCAGAGATGAAATTTTTTGC
AACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGGTGCATCCTGCAG
ACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTGGAGGAAGGGGCTATG
TGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCGCCGTGCCAATATCGG
TCCTGAGACAATGTGCTTATCATGGGAGCAGGGCC
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