FC868713

Overview
NameFC868713
Unique NameFC868713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9454 contig Ccv1_Contig9454:241..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_SALG2 (L-threonine 3-dehydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=tdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.235e-18
Identity = 50/151 (33.11%), Postives = 79/151 (52.32%), Query Frame = 1
Query:  220 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETMCLS 672
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E + +S
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPALNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGEDVLVS 170          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_PYRKO (Probable L-threonine 3-dehydrogenase OS=Pyrococcus kodakaraensis GN=tdh PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.235e-18
Identity = 47/133 (35.34%), Postives = 75/133 (56.39%), Query Frame = 1
Query:  214 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPL 612
            ++P  GP +VL+++ A  ICG+D+H  +    A   +K P ++GHE AG + +VG  V+ L  GD +++E  I C +C  CK  RY++C   K F    + G  A+  + PA   +K P ++  E  A+ EPL
Sbjct:   23 DVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGVEDLQVGDYISVETHIVCGKCYACKHNRYHVCQNTKIFGV-DMDGVFAHYAIVPAKNAWKNPKDMPPEYAALQEPL 154          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: Y053_HAEIN (Uncharacterized zinc-type alcohol dehydrogenase-like protein HI0053 OS=Haemophilus influenzae GN=HI0053 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 49/154 (31.82%), Postives = 82/154 (53.25%), Query Frame = 1
Query:  190 NTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVP-GDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANI 648
            N + ++    P     DVL++++++GICGSD+      R  + +V  P ++GHE  G + + G  +   V  GDRV ++P + C +C  C  GR N C  +K      + G +   + HPA L  K+PDN+ + +  + EPL++ LHA  R  +
Sbjct:   14 NNVVVKEVPYPEKSDNDVLIQVESMGICGSDIG---AYRGTNPLVTYPRILGHEIVGRVIESGIGMSDGVRVGDRVIVDPYVCCGQCYPCSIGRTNCCESLKVIGVH-IDGGMQEVIRHPAHLLTKVPDNLPIHQLPLAEPLTIALHALHRTTL 163          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_VIBCM (L-threonine 3-dehydrogenase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=tdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 47/138 (34.06%), Postives = 74/138 (53.62%), Query Frame = 1
Query:  214 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            ++P LG  D+L+++K   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+GGR +LC            G  +  +V PA   FK+PD +S +  ++ +P    +H
Sbjct:   21 DMPELGHNDLLIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFQIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRT-GCFSEYLVIPAFNAFKIPDGISDDLASIFDPFGNAVH 157          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_VIBCH (L-threonine 3-dehydrogenase OS=Vibrio cholerae GN=tdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 47/138 (34.06%), Postives = 74/138 (53.62%), Query Frame = 1
Query:  214 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            ++P LG  D+L+++K   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+GGR +LC            G  +  +V PA   FK+PD +S +  ++ +P    +H
Sbjct:   21 DMPELGHNDLLIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFQIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRT-GCFSEYLVIPAFNAFKIPDGISDDLASIFDPFGNAVH 157          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_VIBC3 (L-threonine 3-dehydrogenase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=tdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 47/138 (34.06%), Postives = 74/138 (53.62%), Query Frame = 1
Query:  214 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            ++P LG  D+L+++K   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+GGR +LC            G  +  +V PA   FK+PD +S +  ++ +P    +H
Sbjct:   21 DMPELGHNDLLIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFQIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRT-GCFSEYLVIPAFNAFKIPDGISDDLASIFDPFGNAVH 157          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_SHIDS (L-threonine 3-dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=tdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 51/153 (33.33%), Postives = 81/153 (52.94%), Query Frame = 1
Query:  217 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETMCLS 672
            +P LG  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+P N+S +  ++ +P    +H     ++  E + +S
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPGNISDDLASIFDPFGNAVHTALSFDLVGEDVLVS 170          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_PYRFU (Probable L-threonine 3-dehydrogenase OS=Pyrococcus furiosus GN=tdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  214 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPL 612
            ++P  GP +VL+++ A  ICG+D+H  +    A   ++ P ++GHE AG + +VG  V+ +  GD V++E  I C +C  CK G+Y++C   K F      G  A   V PA   +K P N+  E   + EPL
Sbjct:   23 DVPKPGPGEVLIKILATSICGTDLHIYEWNEWAQTRIRPPQIMGHEVAGEVVEVGPGVEGIEVGDYVSVETHIVCGKCYACKRGQYHVCQNTKIFGV-DTDGVFAEYAVVPAQNVWKNPKNIPPEYATLQEPL 154          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_ESCF3 (L-threonine 3-dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=tdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 51/152 (33.55%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  220 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETMCLS 672
            P LG  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+ GR +LC   +      P  G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E + +S
Sbjct:   21 PELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGEDVLVS 170          
BLAST of FC868713 vs. ExPASy Swiss-Prot
Match: TDH_ERWCT (L-threonine 3-dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=tdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 50/138 (36.23%), Postives = 75/138 (54.35%), Query Frame = 1
Query:  217 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLH 627
            +P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G I  +G EV     GDRV+ E  I+C  C +C+ GR +LC   +      P  GS A  +V PA   F++PDN+S E  A+ +P    +H
Sbjct:   20 MPELGHNDIMIKIRKSAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEIVAIGQEVNGFHIGDRVSGEGHITCGYCRNCRAGRRHLCRNAIGVGVNRP--GSFAEYLVIPAYNAFRIPDNISDELAAIFDPFGNAVH 155          
The following BLAST results are available for this feature:
BLAST of FC868713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
TDH_SALG25.235e-1833.11L-threonine 3-dehydrogenase OS=Salmonella gallinar... [more]
TDH_PYRKO5.235e-1835.34Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
Y053_HAEIN6.836e-1831.82Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
TDH_VIBCM6.836e-1834.06L-threonine 3-dehydrogenase OS=Vibrio cholerae ser... [more]
TDH_VIBCH6.836e-1834.06L-threonine 3-dehydrogenase OS=Vibrio cholerae GN=... [more]
TDH_VIBC36.836e-1834.06L-threonine 3-dehydrogenase OS=Vibrio cholerae ser... [more]
TDH_SHIDS6.836e-1833.33L-threonine 3-dehydrogenase OS=Shigella dysenteria... [more]
TDH_PYRFU6.836e-1835.34Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
TDH_ESCF36.836e-1833.55L-threonine 3-dehydrogenase OS=Escherichia ferguso... [more]
TDH_ERWCT6.836e-1836.23L-threonine 3-dehydrogenase OS=Erwinia carotovora ... [more]

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Properties
Property NameValue
Genbank descriptionC31003H02EF AbioticL1 Citrus clementina cDNA clone C31003H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868713 ID=FC868713; Name=FC868713; organism=Citrus clementina; type=EST; length=685bp
GAATCAAATCATATCCCTCATCCAGAATCAGAATAAATGGTAGCTTAAAA
TGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTTTTTGAAGGGT
AAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGAAAAGAAGGAT
GGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAA
GATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGATGTTTTAGTCA
GGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATTATCTCAAGACC
TTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTATGGTGATTGGGCACGA
GTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGC
CCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGCTGCTGGCGATGCGAT
CACTGCAAAGGAGGTCGATACAATTTGTGTCCAGAGATGAAATTTTTTGC
AACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGGTGCATCCTGCAG
ACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTGGAGGAAGGGGCTATG
TGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCGCCGTGCCAATATCGG
TCCTGAGACAATGTGCTTATCATGGGAGCAGGGCC
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