FC868714

Overview
NameFC868714
Unique NameFC868714
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: TDH_IDILO (L-threonine 3-dehydrogenase OS=Idiomarina loihiensis GN=tdh PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.151e-29
Identity = 72/189 (38.10%), Postives = 108/189 (57.14%), Query Frame = 2
Query:  149 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 712
            +E P  G  D+L+++K   +CG+DVH  K    +   +  PMV+GHE  G +  +G  V+    GDRV+ E  I+C  C  C+ GR +LC  + G+G + P  G  A  +  PA+  FKLPD+V+ E  A+ +P    VH     ++  E +VLI G+GPIG++    AR  GA  +VI DV++YRL +
Sbjct:   18 VEKPECGYNDLLIKIKKTAICGTDVHIYKWDDWSQKTIPVPMVVGHEYVGEVAAMGDGVRGFEIGDRVSGEGHITCGHCRNCRAGRRHLCRNTYGVGVNRP--GAFAEYLALPAENAFKLPDDVTDEMAAVFDPFGNAVHTALAFDLVGE-DVLITGAGPIGIMAAAVARHVGARHVVITDVNEYRLDL 203          
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: TDH_LEGPC (L-threonine 3-dehydrogenase OS=Legionella pneumophila (strain Corby) GN=tdh PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.116e-29
Identity = 70/192 (36.46%), Postives = 107/192 (55.73%), Query Frame = 2
Query:  140 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 712
            +Q + +P  G  DVL+++K   +CG+D+H       A   +  PM +GHE  G I +VG EV+ L  G RV+ E  I+C  C  C+ G+ +LC  + G+G + P  GC A  +  PA     LPDN++ E+ A+ +P     H     ++  E +VLI G+GPIG++     R  GA  +VI DV+D+RL +
Sbjct:   15 MQDVPVPEYGVNDVLIKIKRTAICGTDIHIYSWDEWAQATIPVPMTVGHEFYGEIVEVGKEVQGLKVGQRVSGEGHITCGFCRNCRAGKRHLCRNTLGVGVNRP--GCFAEYLALPATNVIALPDNITEEQAAILDPFGNAAHCALAFDVVGE-DVLITGAGPIGIMAAAIVRHIGARHVVITDVNDHRLEL 203          
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: TDH_EDWI9 (L-threonine 3-dehydrogenase OS=Edwardsiella ictaluri (strain 93-146) GN=tdh PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.116e-29
Identity = 69/186 (37.10%), Postives = 104/186 (55.91%), Query Frame = 2
Query:  155 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 712
            LP+LG  D++++++   +CG+DVH       +   +  PMV+GHE  G +  VG EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+PDN+     A+ +P    VH     ++  E +VL+ G+GPIG++     R  GA  +VI DV+DYRL +
Sbjct:   20 LPALGHNDIMIKIRKAAICGTDVHIYNWDTWSQKTIPVPMVVGHEYVGEVVAVGQEVRGFRIGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNR-QGAFAEYLVIPAFNAFKIPDNIPDALAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCRHVGARHVVITDVNDYRLDL 203          
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: TDH_SHEPA (L-threonine 3-dehydrogenase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.020e-29
Identity = 67/185 (36.22%), Postives = 105/185 (56.76%), Query Frame = 2
Query:  158 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 712
            P +G  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+GGR +LC  + G+G     G  A  +V PA   FK+PD++S +  ++ +P    VH     ++  E +VLI G+GPIG++     R  GA  +VI DV++YRL +
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQNTIPVPMVVGHEYVGEVVGMGQEVRGFTIGDRVSGEGHITCGHCRNCRGGRTHLCRNTSGVGVNR-EGAFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLEL 203          
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: TDH_SHEHH (L-threonine 3-dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.020e-29
Identity = 67/185 (36.22%), Postives = 105/185 (56.76%), Query Frame = 2
Query:  158 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 712
            P +G  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+GGR +LC  + G+G     G  A  +V PA   FK+PD++S +  ++ +P    VH     ++  E +VLI G+GPIG++     R  GA  +VI DV++YRL +
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQNTIPVPMVVGHEYVGEVVGMGQEVRGFTIGDRVSGEGHITCGHCRNCRGGRTHLCRNTSGVGVNR-EGAFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLEL 203          
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: TDH_VIBFM (L-threonine 3-dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.168e-29
Identity = 68/188 (36.17%), Postives = 106/188 (56.38%), Query Frame = 2
Query:  149 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 712
            +E P +G  D+L+R+K   +CG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+GGR +LC  + G+G     G  +  +V PA   FK+P  +S +  ++ +P    VH     ++  E +VLI G+GPIG++    A+  GA  +VI DV++YRL +
Sbjct:   20 VEKPEMGHNDLLIRIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNRT-GAFSEYLVIPAFNAFKIPAGISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLDL 205          
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: TDH_VIBF1 (L-threonine 3-dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.168e-29
Identity = 68/188 (36.17%), Postives = 106/188 (56.38%), Query Frame = 2
Query:  149 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 712
            +E P +G  D+L+R+K   +CG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+GGR +LC  + G+G     G  +  +V PA   FK+P  +S +  ++ +P    VH     ++  E +VLI G+GPIG++    A+  GA  +VI DV++YRL +
Sbjct:   20 VEKPEMGHNDLLIRIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNRT-GAFSEYLVIPAFNAFKIPAGISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLDL 205          
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: TDH_PHOPR (L-threonine 3-dehydrogenase OS=Photobacterium profundum GN=tdh PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.197e-28
Identity = 68/188 (36.17%), Postives = 106/188 (56.38%), Query Frame = 2
Query:  149 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 712
            ++ P +G  D+L+R+K   +CG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+GGR +LC  + G+G     G  A  +V PA   FK+P  +S +  ++ +P    VH     ++  E +VLI G+GPIG++    A+  GA  +VI DV++YRL +
Sbjct:   20 VDKPEMGHNDLLIRIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFTIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-DGAFAEFLVIPAFNAFKIPAGISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLDL 205          
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: TDH_VIBSL (L-threonine 3-dehydrogenase OS=Vibrio splendidus (strain LGP32) GN=tdh PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.564e-28
Identity = 68/188 (36.17%), Postives = 106/188 (56.38%), Query Frame = 2
Query:  149 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 712
            +E P +G  D+L+R+K   +CG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+GGR +LC  + G+G     G  +  +V PA   FK+P  +S +  ++ +P    VH     ++  E +VLI G+GPIG++    A+  GA  +VI DV++YRL +
Sbjct:   20 VEKPEMGHNDLLIRIKKTAICGTDVHIYNWDEWSQNTIPVPMVVGHEYVGEVVGIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNRT-GAFSEFLVIPAFNAFKIPAEISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLDL 205          
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: TDH_SHELP (L-threonine 3-dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=tdh PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.564e-28
Identity = 66/185 (35.68%), Postives = 105/185 (56.76%), Query Frame = 2
Query:  158 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 712
            P +G  D+L++++   +CG+DVH       +   +  PMV+GHE  G + ++G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+PD++S +  ++ +P    VH     ++  E +VLI G+GPIG++     R  GA  +VI DV++YRL +
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQNTIPVPMVVGHEYVGEVVEIGQEVRGFQIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGAFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLEL 203          
The following BLAST results are available for this feature:
BLAST of FC868714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
TDH_IDILO3.151e-2938.10L-threonine 3-dehydrogenase OS=Idiomarina loihiens... [more]
TDH_LEGPC4.116e-2936.46L-threonine 3-dehydrogenase OS=Legionella pneumoph... [more]
TDH_EDWI94.116e-2937.10L-threonine 3-dehydrogenase OS=Edwardsiella ictalu... [more]
TDH_SHEPA7.020e-2936.22L-threonine 3-dehydrogenase OS=Shewanella pealeana... [more]
TDH_SHEHH7.020e-2936.22L-threonine 3-dehydrogenase OS=Shewanella halifaxe... [more]
TDH_VIBFM9.168e-2936.17L-threonine 3-dehydrogenase OS=Vibrio fischeri (st... [more]
TDH_VIBF19.168e-2936.17L-threonine 3-dehydrogenase OS=Vibrio fischeri (st... [more]
TDH_PHOPR1.197e-2836.17L-threonine 3-dehydrogenase OS=Photobacterium prof... [more]
TDH_VIBSL1.564e-2836.17L-threonine 3-dehydrogenase OS=Vibrio splendidus (... [more]
TDH_SHELP1.564e-2835.68L-threonine 3-dehydrogenase OS=Shewanella loihica ... [more]

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Properties
Property NameValue
Genbank descriptionC31003H04EF AbioticL1 Citrus clementina cDNA clone C31003H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868714 ID=FC868714; Name=FC868714; organism=Citrus clementina; type=EST; length=712bp
AGTGAAGTCTCTGCTGCGCACTTGTGTTTTTGAAGAGTGAAAAGCAAATA
TGGGCAAGGGAGGGATGTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTT
AACATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAAGATTCAGCCTTT
GGAGCTTCCTTCTCTGGGACCTTATGATGTTTTAGTCAGGATGAAAGCCG
TTGGTGTTTGTGGAAGTGATGTGCATTTTCTCAAGACCTTGAGGCTTGCC
GATTTTGTAGTGAAAGAGCCTATGGTGATTGGGCATGAGTGTGCTGGGGT
CATAGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTG
TGGCCCTGGAACCAGGGATCAGCTGCTGGCAATGTGATTACTGCAAAGGA
GGTCGATACAACTTGTGTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGT
TCATGGTTGTCTGGCTAATCAGGTGGTGCATCCTGCAGACCTATGTTTTA
AGCTGCCCGACAATGTGAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTG
AGTGTTGGTGTTCATGCCTGCCGCCGTGCCAATATCGGTCCTGAGACAAA
TGTGCTTATCATGGGATCAGGGCCCATAGGACTTGTCACAATGCTAGCAG
CTCGTGCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTAT
CGTTTATCTGTT
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