FC868714

Overview
NameFC868714
Unique NameFC868714
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9383 contig Ccv1_Contig9383:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: ADHX_RAT (Alcohol dehydrogenase class-3 OS=Rattus norvegicus GN=Adh5 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 59/220 (26.82%), Postives = 99/220 (45.00%), Query Frame = 2
Query:  110 AWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC-----PESKGL-----------GSPPVH---GCLANQVVHPADLCF-KLPDNVSLEEGAMCEPLSVGVH-----ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD 694
            AW  G   L I+ +E+     ++V +++ A  VC +D +   TL  AD     P+++GHE AG++E VG  V  L  GD V       C +C +C   + NLC      + KGL           G P +H       ++    AD+   K+  +  L++  +   L  G+      A   A + P +   + G G +GL  ++  +  GA RI+ +D++
Sbjct:   13 AWEAG-KPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAY---TLSGADPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCL---LGCGISTGYGAAVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDIN 225          
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: ADHX_MOUSE (Alcohol dehydrogenase class-3 OS=Mus musculus GN=Adh5 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 59/220 (26.82%), Postives = 98/220 (44.55%), Query Frame = 2
Query:  110 AWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE---SKGLGSPP----VHGCLANQVVH------------PADLCF-KLPDNVSLEEGAMCEPLSVGVH-----ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD 694
            AW  G   L I+ +E+     ++V +++ A  VC +D +   TL  AD     P+++GHE AG++E VG  V  L  GD V       C +C +C   + NLC +   ++G G  P       C    V H             AD+   K+  +  L++  +   L  G+      A   A + P +   + G G +GL  ++  +  GA RI+ +D++
Sbjct:   13 AWEAG-KPLSIEEIEVAPPKAHEVRIKILATAVCHTDAY---TLSGADPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKSVFHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCL---LGCGISTGYGAAVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDIN 225          
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: CADH_PINTA (Probable cinnamyl alcohol dehydrogenase OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 54/185 (29.19%), Postives = 83/185 (44.86%), Query Frame = 2
Query:  167 GPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLCPE------SKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD 694
            GP DV+V++   G+C SD   L  +R    +   PMV GHE  G++ ++GSEVK    G+ V +   + SC  C  C       C +             P  G  A+ +V       ++P+N+ LE+ A  +C  ++V       A   P     I+G G +G + +  A+AFG    VI   D
Sbjct:   33 GPEDVIVKVIYCGICHSD---LVQMRNEMGMSHYPMVPGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEPGKKCGILGLGGVGHLGVKIAKAFGLHVTVISSSD 214          
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: CADH_PINRA (Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 54/185 (29.19%), Postives = 83/185 (44.86%), Query Frame = 2
Query:  167 GPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLCPE------SKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD 694
            GP DV+V++   G+C SD   L  +R    +   PMV GHE  G++ ++GSEVK    G+ V +   + SC  C  C       C +             P  G  A+ +V       ++P+N+ LE+ A  +C  ++V       A   P     I+G G +G + +  A+AFG    VI   D
Sbjct:   33 GPEDVIVKVIYCGICHSD---LVQMRNEMGMSHYPMVPGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEPGKKCGILGLGGVGHMGVKIAKAFGLHVTVISSSD 214          
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 52/181 (28.73%), Postives = 87/181 (48.07%), Query Frame = 2
Query:  167 GPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLCPES-KGLGSP-----PVHGCLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVI 682
            G  DV  ++   G+C SD+H +K       +   P+V GHE  GV+ +VG++V     G++V +   + SC  CD C  G  N CP+S +  G P       +G  ++ +V       ++PDN+ L+  A  +C  ++V           P  ++ ++G G +G V +  A+A G    VI
Sbjct:   32 GEKDVRFKVLFCGICHSDLHMVKN---EWGMSTYPLVPGHEIVGVVTEVGAKVTKFKTGEKVGVGCLVSSCGSCDSCTEGMENYCPKSIQTYGFPYYDNTITYGGYSDHMVCEEGFVIRIPDNLPLDAAAPLLCAGITVYSPMKYHGLDKPGMHIGVVGLGGLGHVGVKFAKAMGTKVTVI 209          
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: ADHX_BOVIN (Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 58/217 (26.73%), Postives = 97/217 (44.70%), Query Frame = 2
Query:  110 AWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE---SKGLGSPP----VHGCLANQVVHPADLC----FKLPDNVSLEEGAMCEPL----------SVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD 694
            AW  G   L I+ +E+     ++V +++ A  VC +D +   TL  AD     P+++GHE AG++E VG  V  L  GD V       C +C +C   + NLC +   ++G G  P       C    ++H         + +  ++S+ +     PL          S G  A    A + P +   + G G +GL  ++  +  GA RI+ VD++
Sbjct:   13 AWEAG-KPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAY---TLSGADPEGNYPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAALNAAKVEPGSTCAVFGLGGVGLAVIMGCKMAGAARIIGVDIN 225          
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: ADH7_YEAST (NADP-dependent alcohol dehydrogenase 7 OS=Saccharomyces cerevisiae GN=ADH7 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 58/192 (30.21%), Postives = 90/192 (46.88%), Query Frame = 2
Query:  137 KIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADF-VVKEPMVIGHECAGVIEKVGSEVKTLVP-GDRVAL-EPGISCWQCDYCKGGRYNLC----------PESKGLGSPPVHGCLANQVVHPADLCFKLPDNV--SLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 667
            K+   +    G +DV V ++A G+CGSD H    + + ++  V E  ++GHE  G + KVGS+  T V  GDRV +    ++C++C+ CK      C          P   G  S    G  A+ V        ++P+N+   L    +C  ++V      R   GP   V I+G G IG + +L A+A GA
Sbjct:   22 KLVSFDPKPFGDHDVDVEIEACGICGSDFH----IAVGNWGPVPENQILGHEIIGRVVKVGSKCHTGVKIGDRVGVGAQALACFECERCKSDNEQYCTNDHVLTMWTPYKDGYIS---QGGFASHVRLHEHFAIQIPENIPSPLAAPLLCGGITV-FSPLLRNGCGPGKRVGIVGIGGIGHMGILLAKAMGA 205          
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: ADH2_EMENI (Alcohol dehydrogenase 2 OS=Emericella nidulans GN=alcB PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 61/198 (30.81%), Postives = 94/198 (47.47%), Query Frame = 2
Query:  122 GVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFL-KTLRLADFVVKEPMVIGHECAGVIEKVGS--EVKTLVPGDRVALE-PGISCWQCDYCKGGRYNLCPESK--GLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHA-CRRANIGPETNVLIMGS-GPIG-LVTMLAARAFGAPRIVIVD 688
            G  + K+  L++P  G  +VL+ +   GVC SD   +  T ++  F  +   V GHE  G + K+G+  E   L  GDRV ++    +C QC  C+ G   LC   K  G  +P   G     V+ PA     +PD +   E A      V V+A  +R+   P   ++I G+ G +G L   +AA+  G  R++ VD
Sbjct:   19 GTVSTKVVELDVPEPGDNEVLINLTHSGVCHSDFGIMTNTWKILPFPTQPGQVGGHEGVGKVVKLGAGAEASGLKIGDRVGVKWISSACGQCPPCQDGADGLCFNQKVSGYYTP---GTFQQYVLGPAQYVTPIPDGLPSAEAAPLLCAGVTVYASLKRSKAQPGQWIVISGAGGGLGHLAVQIAAKGMGL-RVIGVD 212          
The following BLAST results are available for this feature:
BLAST of FC868714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
ADHX_RAT3.870e-1126.82Alcohol dehydrogenase class-3 OS=Rattus norvegicus... [more]
ADHX_MOUSE3.870e-1126.82Alcohol dehydrogenase class-3 OS=Mus musculus GN=A... [more]
CADH_PINTA5.054e-1129.19Probable cinnamyl alcohol dehydrogenase OS=Pinus t... [more]
CADH_PINRA5.054e-1129.19Probable cinnamyl alcohol dehydrogenase OS=Pinus r... [more]
CADH8_ARATH5.054e-1128.73Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]
ADHX_BOVIN5.054e-1126.73Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH... [more]
ADH7_YEAST5.054e-1130.21NADP-dependent alcohol dehydrogenase 7 OS=Saccharo... [more]
ADH2_EMENI8.621e-1130.81Alcohol dehydrogenase 2 OS=Emericella nidulans GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31003H04EF AbioticL1 Citrus clementina cDNA clone C31003H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868714 ID=FC868714; Name=FC868714; organism=Citrus clementina; type=EST; length=712bp
AGTGAAGTCTCTGCTGCGCACTTGTGTTTTTGAAGAGTGAAAAGCAAATA
TGGGCAAGGGAGGGATGTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTT
AACATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAAGATTCAGCCTTT
GGAGCTTCCTTCTCTGGGACCTTATGATGTTTTAGTCAGGATGAAAGCCG
TTGGTGTTTGTGGAAGTGATGTGCATTTTCTCAAGACCTTGAGGCTTGCC
GATTTTGTAGTGAAAGAGCCTATGGTGATTGGGCATGAGTGTGCTGGGGT
CATAGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTG
TGGCCCTGGAACCAGGGATCAGCTGCTGGCAATGTGATTACTGCAAAGGA
GGTCGATACAACTTGTGTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGT
TCATGGTTGTCTGGCTAATCAGGTGGTGCATCCTGCAGACCTATGTTTTA
AGCTGCCCGACAATGTGAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTG
AGTGTTGGTGTTCATGCCTGCCGCCGTGCCAATATCGGTCCTGAGACAAA
TGTGCTTATCATGGGATCAGGGCCCATAGGACTTGTCACAATGCTAGCAG
CTCGTGCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTAT
CGTTTATCTGTT
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