FC868714

Overview
NameFC868714
Unique NameFC868714
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9383 contig Ccv1_Contig9383:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: TDH_SALAR (L-threonine 3-dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.182e-30
Identity = 70/186 (37.63%), Postives = 109/186 (58.60%), Query Frame = 2 
Query:  158 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 712
            P +G  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ G+GPIG++    A+  GA  +VI DV++YRL +
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLEL 203
[Close]
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: TDH_SALTY (L-threonine 3-dehydrogenase OS=Salmonella typhimurium GN=tdh PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30
Identity = 70/186 (37.63%), Postives = 109/186 (58.60%), Query Frame = 2 
Query:  158 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 712
            P +G  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ G+GPIG++    A+  GA  +VI DV++YRL +
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLEL 203
[Close]
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: TDH_SALSV (L-threonine 3-dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30
Identity = 70/186 (37.63%), Postives = 109/186 (58.60%), Query Frame = 2 
Query:  158 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 712
            P +G  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ G+GPIG++    A+  GA  +VI DV++YRL +
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLEL 203
[Close]
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: TDH_SALPK (L-threonine 3-dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30
Identity = 70/186 (37.63%), Postives = 109/186 (58.60%), Query Frame = 2 
Query:  158 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 712
            P +G  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ G+GPIG++    A+  GA  +VI DV++YRL +
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLEL 203
[Close]
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: TDH_SALPC (L-threonine 3-dehydrogenase OS=Salmonella paratyphi C (strain RKS4594) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30
Identity = 70/186 (37.63%), Postives = 109/186 (58.60%), Query Frame = 2 
Query:  158 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 712
            P +G  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ G+GPIG++    A+  GA  +VI DV++YRL +
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLEL 203
[Close]
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: TDH_SALPB (L-threonine 3-dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30
Identity = 70/186 (37.63%), Postives = 109/186 (58.60%), Query Frame = 2 
Query:  158 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 712
            P +G  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ G+GPIG++    A+  GA  +VI DV++YRL +
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLEL 203
[Close]
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: TDH_SALPA (L-threonine 3-dehydrogenase OS=Salmonella paratyphi A GN=tdh PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30
Identity = 70/186 (37.63%), Postives = 109/186 (58.60%), Query Frame = 2 
Query:  158 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 712
            P +G  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ G+GPIG++    A+  GA  +VI DV++YRL +
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLEL 203
[Close]
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: TDH_SALNS (L-threonine 3-dehydrogenase OS=Salmonella newport (strain SL254) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30
Identity = 70/186 (37.63%), Postives = 109/186 (58.60%), Query Frame = 2 
Query:  158 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 712
            P +G  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ G+GPIG++    A+  GA  +VI DV++YRL +
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLEL 203
[Close]
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: TDH_SALHS (L-threonine 3-dehydrogenase OS=Salmonella heidelberg (strain SL476) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30
Identity = 70/186 (37.63%), Postives = 109/186 (58.60%), Query Frame = 2 
Query:  158 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 712
            P +G  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ G+GPIG++    A+  GA  +VI DV++YRL +
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLEL 203
[Close]
BLAST of FC868714 vs. ExPASy Swiss-Prot
Match: TDH_SALEP (L-threonine 3-dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30
Identity = 70/186 (37.63%), Postives = 109/186 (58.60%), Query Frame = 2 
Query:  158 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 712
            P +G  D+L++++   +CG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C  C+GGR +LC  + G+G + P  GC A  +V PA   FK+PDN+S +  ++ +P    VH     ++  E +VL+ G+GPIG++    A+  GA  +VI DV++YRL +
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLEL 203
The following BLAST results are available for this feature:
BLAST of FC868714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
TDH_SALAR2.182e-3037.63L-threonine 3-dehydrogenase OS=Salmonella arizonae... [more]
TDH_SALTY2.850e-3037.63L-threonine 3-dehydrogenase OS=Salmonella typhimur... [more]
TDH_SALSV2.850e-3037.63L-threonine 3-dehydrogenase OS=Salmonella schwarze... [more]
TDH_SALPK2.850e-3037.63L-threonine 3-dehydrogenase OS=Salmonella paratyph... [more]
TDH_SALPC2.850e-3037.63L-threonine 3-dehydrogenase OS=Salmonella paratyph... [more]
TDH_SALPB2.850e-3037.63L-threonine 3-dehydrogenase OS=Salmonella paratyph... [more]
TDH_SALPA2.850e-3037.63L-threonine 3-dehydrogenase OS=Salmonella paratyph... [more]
TDH_SALNS2.850e-3037.63L-threonine 3-dehydrogenase OS=Salmonella newport ... [more]
TDH_SALHS2.850e-3037.63L-threonine 3-dehydrogenase OS=Salmonella heidelbe... [more]
TDH_SALEP2.850e-3037.63L-threonine 3-dehydrogenase OS=Salmonella enteriti... [more]

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Properties
Property NameValue
Genbank descriptionC31003H04EF AbioticL1 Citrus clementina cDNA clone C31003H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868714 ID=FC868714; Name=FC868714; organism=Citrus clementina; type=EST; length=712bp
AGTGAAGTCTCTGCTGCGCACTTGTGTTTTTGAAGAGTGAAAAGCAAATA
TGGGCAAGGGAGGGATGTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTT
AACATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAAGATTCAGCCTTT
GGAGCTTCCTTCTCTGGGACCTTATGATGTTTTAGTCAGGATGAAAGCCG
TTGGTGTTTGTGGAAGTGATGTGCATTTTCTCAAGACCTTGAGGCTTGCC
GATTTTGTAGTGAAAGAGCCTATGGTGATTGGGCATGAGTGTGCTGGGGT
CATAGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTG
TGGCCCTGGAACCAGGGATCAGCTGCTGGCAATGTGATTACTGCAAAGGA
GGTCGATACAACTTGTGTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGT
TCATGGTTGTCTGGCTAATCAGGTGGTGCATCCTGCAGACCTATGTTTTA
AGCTGCCCGACAATGTGAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTG
AGTGTTGGTGTTCATGCCTGCCGCCGTGCCAATATCGGTCCTGAGACAAA
TGTGCTTATCATGGGATCAGGGCCCATAGGACTTGTCACAATGCTAGCAG
CTCGTGCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGATGACTAT
CGTTTATCTGTT
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