FC868724

Overview
NameFC868724
Unique NameFC868724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868724_ssr414 microsatellite FC868724_ssr414:414..423. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL18_ARATH (Germin-like protein subfamily 1 member 8 OS=Arabidopsis thaliana GN=GLP9 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.446e-30
Identity = 75/198 (37.88%), Postives = 113/198 (57.07%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR---QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDD--LVRKFISISALDE*SIRNV 617
            +D   LQD C    T    +F+NG  CK P  +FA DF  + L   G+T+    S++T +   +  GLNTLG+S+ R D   +G   PHTHPRA+E+L V +G ++ GF+ +N+   ++F   L  G+V VFP GL+HF FN+G   A   + L+SQN GV++I++  F     +D   L R F     +D  ++RN+
Sbjct:   25 SDPSPLQDFCVGVNTPADGVFVNGKFCKDPRIVFADDFFFSSLNRPGNTNNAVGSNVTTVNVNNLGGLNTLGISLVRIDYAPNGQNPPHTHPRATEILVVQQGTLLVGFISSNQDGNRLFAKTLNVGDVFVFPEGLIHFQFNLGGTPAVAIAALSSQNAGVITIANTIFGSKPDVDPNVLARAF----QMDVNAVRNL 218          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL112_ARATH (Putative germin-like protein subfamily 1 member 12 OS=Arabidopsis thaliana GN=At5g38960 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.467e-30
Identity = 74/189 (39.15%), Postives = 105/189 (55.56%), Query Frame = 3
Query:    3 YIICFTCIGFRRA-DFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPY-SSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDT--NRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTID 557
            Y++  + + F  A D   LQD C    T    +F+NG  CK P  + A DF  + L  A  T+  P  S++T +     PGLNTLG+S+ R D  ++G   PHTHPRA+E+L V +G +  GF  +    ++F   L  G+V VFP GL+HF  N+G + A  F+ L+SQNPGV+ I +  F     ID
Sbjct:   12 YLLAASTLPFAIASDPSPLQDFCIGVNTPANALFVNGKFCKDPKLVTADDFYFSGLDKARTTESSPVGSNVTTVNVNQIPGLNTLGISLVRIDYGINGQNPPHTHPRATEILLVQEGTLFVGFFSSFPENRLFNKTLNKGDVFVFPEGLIHFQVNIGKQPAVAFASLSSQNPGVIIIGNTLFGSKPPID 200          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL117_ARATH (Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana GN=At5g39150 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.221e-30
Identity = 70/171 (40.94%), Postives = 100/171 (58.48%), Query Frame = 3
Query:   54 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR---QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTID 557
            LQD C      K  +F+NG  CK P +  A DF S+ L  AG T+    S++T +     PGLNTLG+S+ R D    G   PHTHPRA+E+L + +G +  GFV +N+   ++F  +L  G+V VFP G++HF  N+G   A  F+ L+SQN GV++I+D  F     I+
Sbjct:   27 LQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPIN 197          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL111_ARATH (Germin-like protein subfamily 1 member 11 OS=Arabidopsis thaliana GN=At5g38940 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.221e-30
Identity = 69/168 (41.07%), Postives = 101/168 (60.12%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN--RQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAF 536
            +D   LQD C +  T    +F+NG  CK P  + A DF  + L+ A        S++T +   +  GLNTLG+S+ R D  V+G   PHTHPRA+E+L V +G ++ GFV +N   ++F  +L  G+V VFP GL+HF  N+G   A  F+ L+SQNPGV++I++  F
Sbjct:   25 SDPSQLQDFCVSANTSANGVFVNGKFCKDPKLVTADDFFFSGLQTARPITSPVGSTVTAVNVNNLLGLNTLGISLVRIDYAVNGQNPPHTHPRATEILVVEQGTLLVGFVTSNPDNRLFSKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIANTVF 192          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL32_ORYSJ (Putative germin-like protein 3-2 OS=Oryza sativa subsp. japonica GN=Os03g0651800 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.207e-30
Identity = 75/181 (41.44%), Postives = 104/181 (57.46%), Query Frame = 3
Query:   42 DFDNLQDICPTD-TTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI--DDLVRKF 575
            D D LQD+C  D  + +  + +NG+PCK  + + A+DF    L +AG+T     S +T  +    PGLNT+G+S+AR D    G+  PHTHPRA+E++FV +G +  GFV T  ++F   +  GEV VFPRGL+HF  N G   A   +  NSQ PG  SI+D  F     +  D L R F
Sbjct:   24 DPDMLQDVCVADYKSLRGPLRLNGIPCKRLENVTANDFFFDGLTNAGNTTNAVGSLVTAASVERLPGLNTMGVSMARIDYAPWGLSPPHTHPRATEIMFVAEGTLDVGFVTTANKLFTRTVSKGEVFVFPRGLVHFQRNSGNTSALAIAAFNSQLPGTQSIADTLFGAAPPLPSDTLARAF 204          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL119_ARATH (Germin-like protein subfamily 1 member 19 OS=Arabidopsis thaliana GN=At5g39180 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.207e-30
Identity = 70/171 (40.94%), Postives = 100/171 (58.48%), Query Frame = 3
Query:   54 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR---QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTID 557
            LQD C      K  +F+NG  CK P +  A DF S+ L  AG T+    S++T +     PGLNTLG+S+ R D    G   PHTHPRA+E+L + +G +  GFV +N+   ++F  +L  G+V VFP G++HF  N+G   A  F+ L+SQN GV++I+D  F     I+
Sbjct:   27 LQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADIVFGSTPPIN 197          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL115_ARATH (Germin-like protein subfamily 1 member 15 OS=Arabidopsis thaliana GN=At5g39120 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.207e-30
Identity = 70/171 (40.94%), Postives = 100/171 (58.48%), Query Frame = 3
Query:   54 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR---QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTID 557
            LQD C      K  +F+NG  CK P +  A DF S+ L  AG T+    S++T +     PGLNTLG+S+ R D    G   PHTHPRA+E+L + +G +  GFV +N+   ++F  +L  G+V VFP G++HF  N+G   A  F+ L+SQN GV++I+D  F     I+
Sbjct:   27 LQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVKSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPIN 197          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL16_ARATH (Germin-like protein subfamily 1 member 6 OS=Arabidopsis thaliana GN=At3g04200 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.495e-30
Identity = 73/174 (41.95%), Postives = 102/174 (58.62%), Query Frame = 3
Query:   42 DFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR---QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI 554
            D + LQD C    ++   +F+NG  CK P  + A+DF  + L  A +T  F  S++T +     PGLNTLG+S+AR D    G   PH HPRA+E+L V KG ++ GFV +N+   ++F  +LK G+V VFP GL+HF  NV    A  F+   SQNPG + I+DA F    +I
Sbjct:   27 DPNPLQDFCVA-ASETNRVFVNGKFCKDPKSVTANDFSYSGLNIARNTTNFLGSNVTTVDVNKIPGLNTLGVSLARLDFAQGGQNPPHIHPRATEILVVTKGKLLVGFVSSNQDNNRLFYKVLKRGDVFVFPIGLIHFQMNVRRTRAVAFAGFGSQNPGTIRIADAVFGSNPSI 199          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: NEC1_NICPL (Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.373e-30
Identity = 81/197 (41.12%), Postives = 106/197 (53.81%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRKFISISALDE*SIRNVTLP 626
            AD D LQD+C  D   K  + +NG PCK+     A+DF S  +   G T+    S +T       PGLNTLG+S+AR D    G+  PHTHPRASEM+FV +G +  GF+ T   +    +  GEV VFPRGL+HF  N G   A V S  NSQ PG  SI    F    T+ DD++ +   I+  D   I++   P
Sbjct:   33 ADEDMLQDVCVADLHSK--VKVNGFPCKT--NFTAADFSSFAISKPGATNNKFGSKVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASEMVFVMEGELDVGFITTANVLVSKQITKGEVFVFPRGLVHFQKNNGKIPAAVVSAFNSQLPGTQSIPITLFGASPTVPDDVLAQTFQINIEDVQQIKSKFAP 225          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL24_ORYSJ (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.224e-29
Identity = 73/171 (42.69%), Postives = 98/171 (57.31%), Query Frame = 3
Query:   36 RADFDNLQDICPTDTTKKQTI---FINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMV-VPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAF 536
            R D D +QD C  D  + + +    +   PC+SP  + A DF  + +R AG+       +   +T A FPGL+TLG+S AR DL   G V  PH HPRA+E   V  G V AGFVD+  ++F  +L+ GEV VFPR ++HF  NVG   ATV+   NS+NPG+V I    F
Sbjct:   22 RGDPDAVQDFCVPDAGRGRPVELAMLPAYPCRSPANLTAGDFAFSGVRAAGNFSPETGFAGVSVTPAQFPGLHTLGMSFARADLSAAGGVNPPHYHPRATETALVLAGRVYAGFVDSGGRLFAKVLEQGEVMVFPRAMVHFQLNVGDTPATVYGAFNSENPGIVRIPATVF 192          
The following BLAST results are available for this feature:
BLAST of FC868724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL18_ARATH1.446e-3037.88Germin-like protein subfamily 1 member 8 OS=Arabid... [more]
GL112_ARATH2.467e-3039.15Putative germin-like protein subfamily 1 member 12... [more]
GL117_ARATH3.221e-3040.94Germin-like protein subfamily 1 member 17 OS=Arabi... [more]
GL111_ARATH3.221e-3041.07Germin-like protein subfamily 1 member 11 OS=Arabi... [more]
GL32_ORYSJ4.207e-3041.44Putative germin-like protein 3-2 OS=Oryza sativa s... [more]
GL119_ARATH4.207e-3040.94Germin-like protein subfamily 1 member 19 OS=Arabi... [more]
GL115_ARATH4.207e-3040.94Germin-like protein subfamily 1 member 15 OS=Arabi... [more]
GL16_ARATH5.495e-3041.95Germin-like protein subfamily 1 member 6 OS=Arabid... [more]
NEC1_NICPL9.373e-3041.12Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE... [more]
GL24_ORYSJ1.224e-2942.69Germin-like protein 2-4 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC31004A06EF AbioticL1 Citrus clementina cDNA clone C31004A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868724 ID=FC868724; Name=FC868724; organism=Citrus clementina; type=EST; length=661bp
TGTACATAATCTGCTTCACTTGCATTGGCTTCCGCCGGGCAGATTTTGAT
AATCTTCAGGATATCTGCCCAACTGATACAACTAAGAAACAAACCATTTT
CATTAATGGTTTGCCATGCAAGAGTCCAGACCGCATATTTGCTTCGGATT
TCAAGTCCACGAAACTAAGAGATGCCGGCGACACAGATAAATTTCCCTAT
TCCTCATTGACCCTCCTCACTGCTGCAGATTTCCCAGGCCTTAACACTCT
TGGCCTTTCCGTTGCTAGAACTGACCTTGATGTGGATGGCATGGTGGTGC
CTCATACTCACCCTAGAGCCTCAGAGATGCTCTTCGTTTTCAAAGGTGTT
GTGATTGCTGGTTTTGTTGACACCAACAGACAGGTTTTCCAGGTAATGCT
TAAAGCAGGAGAAGTGTGTGTGTTTCCCAGGGGTCTGCTACACTTCGGCT
TTAACGTTGGTTATGAGTTCGCAACTGTTTTTTCAGTGCTAAACAGCCAG
AATCCTGGGGTGGTCAGCATCAGTGATGCCGCGTTCTCCGATTTCGATAC
CATTGACGACCTTGTGAGAAAATTCATTTCAATTTCTGCGTTGGACGAAT
AGAGTATCAGAAATGTCACACTTCCNAAGATTTACAAGCTTAAAATCACG
AAACACCACAT
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