FC868724

Overview
NameFC868724
Unique NameFC868724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868724_ssr414 microsatellite FC868724_ssr414:414..423. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL114_ARATH (Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.599e-29
Identity = 73/182 (40.11%), Postives = 103/182 (56.59%), Query Frame = 3
Query:   24 IGFRRA-DFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR---QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTID 557
            I F  A D   LQD C      K  +F+NG  CK P +  A DF  + L  AG T+    S++T +     PGLNTLG+S+ R D    G   PHTHPRA+E+L + +G +  GFV +N+   ++F  +L  G+V VFP G++HF  N+G   A  F+ L+SQN GV++I+D  F     I+
Sbjct:   17 ISFAEANDPSPLQDFCVAIGDLKNGVFVNGKFCKDPKQAKAEDFFYSGLNQAGTTNNKVKSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPIN 198          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL32_ARATH (Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.088e-29
Identity = 70/193 (36.27%), Postives = 108/193 (55.96%), Query Frame = 3
Query:    6 IICFTCIGFRRADFDNLQDIC---PTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKF 575
            ++CF       +D D +QD C   P  +      F   LPCK+   +   DF  + L+ AG+  +  ++++ +    +FPGLNTLG+S  R DL    +  PH HPRA+E+  + KG V +GFVD+N +V+  +++ GE+ V+P+GL+HF  NVG   AT+   LNSQNPG+  I    F      + L++ F
Sbjct:   14 LLCFNVCFTLASDPDPIQDFCIPKPVTSPYHDHHFSTNLPCKNSSEVTTEDFVFSGLKTAGNFTETGFATVPV-GPENFPGLNTLGISFVRADLKPGSINPPHYHPRATEVAHLVKGRVYSGFVDSNNKVYAKVMEEGEMMVYPKGLVHFQMNVGDVTATIVGGLNSQNPGIQKIPSVVFGSGINEELLMKAF 205          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL113_ARATH (Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.088e-29
Identity = 72/182 (39.56%), Postives = 103/182 (56.59%), Query Frame = 3
Query:   24 IGFRRA-DFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR---QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTID 557
            I F  A D   LQD C      K  +F+NG  CK P +  A DF  + L  AG T+    S++T +     PGLNT+G+S+ R D    G   PHTHPRA+E+L + +G +  GFV +N+   ++F  +L  G+V VFP G++HF  N+G   A  F+ L+SQN GV++I+D  F     I+
Sbjct:   17 ISFAEAYDPSPLQDFCVAIDDLKNGVFVNGKFCKDPKQAKAEDFFFSGLNQAGSTNNKVRSNVTTVNVDQIPGLNTMGISLVRIDYAPYGQNPPHTHPRATEILVLIEGTLYVGFVSSNQDNNRLFAKVLYPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPIN 198          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL110_ARATH (Germin-like protein subfamily 1 member 10 OS=Arabidopsis thaliana GN=At5g38930 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.088e-29
Identity = 69/168 (41.07%), Postives = 98/168 (58.33%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN--RQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAF 536
            +D   LQD C +  +    +F+NG  CK P  + A DF    L+ A        S++T +   +  GLNTLG+S+ R D  VDG   PHTHPRA+E+L V  G ++ GFV +N   ++F  +L  G+V VFP GL+HF  N+G   A  F+ L+SQNPGV++I+   F
Sbjct:   25 SDPSQLQDFCVSANSSANGVFVNGKFCKDPKLVTADDFFFPGLQTARPITSPVGSTVTAVNVNNLLGLNTLGISLVRIDYAVDGQNPPHTHPRATEILVVELGTLLVGFVTSNPDNRLFTKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIAPTVF 192          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL17_ARATH (Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.562e-29
Identity = 71/170 (41.76%), Postives = 100/170 (58.82%), Query Frame = 3
Query:   54 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR---QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI 554
            LQD C         +F+NG  CK P  + A DF ++ L  AG+T     S++T +     PGLNTLG+S+ R D    G   PHTHPRA+E+L V +G ++ GFV +N+   ++F  +L  G+V VFP G++HF  NVG   A  F+ L SQNPG ++I+DA F    +I
Sbjct:   30 LQDFCVA-VDDASGVFVNGKFCKDPKYVKAEDFFTSGLNIAGNTINRVGSNVTNVNVDKIPGLNTLGVSLVRIDFAPGGQNPPHTHPRATEILVVVEGTLLVGFVTSNQDNNRLFSKVLYPGDVFVFPIGMIHFQVNVGRTNAVAFAGLGSQNPGTITIADAVFGSKPSI 198          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL13_ORYSJ (Germin-like protein 1-3 OS=Oryza sativa subsp. japonica GN=GER8 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.562e-29
Identity = 77/181 (42.54%), Postives = 103/181 (56.91%), Query Frame = 3
Query:   42 DFDNLQDICPTD-TTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI--DDLVRKF 575
            D D LQD+C  D  + K  + +NG PCK  + + A+DF    L  AG+T     S +T  +    PGLNT+G+S+AR D    G+  PHTHPRA+E++FV +G +  GFV T  ++F   +  GEV VFPRGL+HF  N G   A   + LNSQ PG  SI+ A F     +  D L R F
Sbjct:   24 DPDMLQDVCVADYKSLKGPLRLNGFPCKRIENVTANDFFFDGLMKAGNTGNAVGSVVTAASVESLPGLNTMGVSMARIDYAPWGLNPPHTHPRATEIIFVVEGSLDVGFVTTANKLFTRTVCKGEVFVFPRGLVHFQKNNGNTPAFAIAALNSQLPGTQSIAAALFGAAPPLPSDTLARAF 204          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL11_ORYSJ (Germin-like protein 1-1 OS=Oryza sativa subsp. japonica GN=GER4 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.562e-29
Identity = 70/166 (42.17%), Postives = 99/166 (59.64%), Query Frame = 3
Query:   42 DFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFS 539
            D D LQD+C  D      + +NG PCK+   + A DF    L++ G+T+    S++T      FPG+NTLG+S+AR D    G   PHTHPRA+E++FV +GV+  GF+ T  ++F   + AGEV VFPRGL+HF  N G+  A V +  NSQ  G  +I+   F+
Sbjct:   26 DPDMLQDVCVADLASP--VKLNGFPCKA--NVTADDFFFAGLKNPGNTNNPAGSNVTAANVQSFPGVNTLGVSMARIDYAPGGQNPPHTHPRATEIIFVLEGVLEVGFITTANKLFTKTVTAGEVFVFPRGLVHFQQNRGHGPAAVIAAFNSQLQGTQAIAATLFA 187          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: NEC1_NICLS (Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NECI PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.075e-29
Identity = 80/197 (40.61%), Postives = 105/197 (53.30%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRKFISISALDE*SIRNVTLP 626
            AD D LQD+C  D   K  + +NG PCK+     A+DF S  +   G T+    S +T       PGLNTLG+S+AR D    G+  PHTHPRASEM+FV +G +  GF+ T   +    +  GEV VFPRGL+HF  N G   A V S  NSQ PG  SI    F     + DD++ +   I+  D   I++   P
Sbjct:   33 ADEDMLQDVCVADLHSK--VKVNGFPCKT--NFTAADFSSLAISKPGATNNKFGSVVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASEMVFVMEGELDVGFITTANVLVSKKIIKGEVFVFPRGLVHFQKNNGEVPAAVISAFNSQLPGTQSIPITLFGASPPVPDDVLAQTFQINTEDVQQIKSKFAP 225          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL15_ARATH (Germin-like protein subfamily 1 member 5 OS=Arabidopsis thaliana GN=At3g04190 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.353e-28
Identity = 69/174 (39.66%), Postives = 96/174 (55.17%), Query Frame = 3
Query:   54 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR---QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 566
            LQD C   T +   +++NG  CK P  + A+DF ++ L   G+T   P   +T++     PGLNTLG+ +AR D    G+  PHTHPR SE+  V KG +  GFV +N     +F  +L  G+V VFP+GL+ F  N+G   A V +   SQNPG + I +A F     ID  V
Sbjct:   30 LQDYCVA-TNETNGVYVNGKFCKDPKCVTANDFYTSGLNVPGNTSTGPGVKITVVDVKRMPGLNTLGVDIARIDFAPGGLYPPHTHPRGSEIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIQFHANIGKTNAVVIAATGSQNPGRIIIGNAVFGSKPLIDPKV 202          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL82_ORYSJ (Germin-like protein 8-2 OS=Oryza sativa subsp. japonica GN=GER3 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.768e-28
Identity = 74/187 (39.57%), Postives = 107/187 (57.22%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDF-KSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN--RQVFQVMLKAGEVCVFPRGLLHFGFNVG-YEFATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRKFISI 584
            +D   LQD C  D      + +NG  CK+P    A DF K+  L    DT+    S++TL+     PGLNTLG+S+AR D    G+  PHTHPRA+E+  V +G +  GFV +N   ++   +L  G+V VFP GL+HF FN   ++ A   + L+SQNPGV++I++A F     I DD++ K   +
Sbjct:   25 SDPSPLQDFCVADLNSP--VRVNGFVCKNPMNASADDFFKAAMLDKPRDTNNKVGSNVTLVNVLQLPGLNTLGISIARLDFAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNPDNRLLSKVLNKGDVFVFPEGLIHFQFNPNPHKPAVAIAALSSQNPGVITIANAVFGSNPPISDDILMKAFQV 209          
The following BLAST results are available for this feature:
BLAST of FC868724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL114_ARATH1.599e-2940.11Germin-like protein subfamily 1 member 14 OS=Arabi... [more]
GL32_ARATH2.088e-2936.27Germin-like protein subfamily 3 member 2 OS=Arabid... [more]
GL113_ARATH2.088e-2939.56Germin-like protein subfamily 1 member 13 OS=Arabi... [more]
GL110_ARATH2.088e-2941.07Germin-like protein subfamily 1 member 10 OS=Arabi... [more]
GL17_ARATH3.562e-2941.76Germin-like protein subfamily 1 member 7 OS=Arabid... [more]
GL13_ORYSJ3.562e-2942.54Germin-like protein 1-3 OS=Oryza sativa subsp. jap... [more]
GL11_ORYSJ3.562e-2942.17Germin-like protein 1-1 OS=Oryza sativa subsp. jap... [more]
NEC1_NICLS6.075e-2940.61Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana s... [more]
GL15_ARATH1.353e-2839.66Germin-like protein subfamily 1 member 5 OS=Arabid... [more]
GL82_ORYSJ1.768e-2839.57Germin-like protein 8-2 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC31004A06EF AbioticL1 Citrus clementina cDNA clone C31004A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868724 ID=FC868724; Name=FC868724; organism=Citrus clementina; type=EST; length=661bp
TGTACATAATCTGCTTCACTTGCATTGGCTTCCGCCGGGCAGATTTTGAT
AATCTTCAGGATATCTGCCCAACTGATACAACTAAGAAACAAACCATTTT
CATTAATGGTTTGCCATGCAAGAGTCCAGACCGCATATTTGCTTCGGATT
TCAAGTCCACGAAACTAAGAGATGCCGGCGACACAGATAAATTTCCCTAT
TCCTCATTGACCCTCCTCACTGCTGCAGATTTCCCAGGCCTTAACACTCT
TGGCCTTTCCGTTGCTAGAACTGACCTTGATGTGGATGGCATGGTGGTGC
CTCATACTCACCCTAGAGCCTCAGAGATGCTCTTCGTTTTCAAAGGTGTT
GTGATTGCTGGTTTTGTTGACACCAACAGACAGGTTTTCCAGGTAATGCT
TAAAGCAGGAGAAGTGTGTGTGTTTCCCAGGGGTCTGCTACACTTCGGCT
TTAACGTTGGTTATGAGTTCGCAACTGTTTTTTCAGTGCTAAACAGCCAG
AATCCTGGGGTGGTCAGCATCAGTGATGCCGCGTTCTCCGATTTCGATAC
CATTGACGACCTTGTGAGAAAATTCATTTCAATTTCTGCGTTGGACGAAT
AGAGTATCAGAAATGTCACACTTCCNAAGATTTACAAGCTTAAAATCACG
AAACACCACAT
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