FC868724

Overview
NameFC868724
Unique NameFC868724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868724_ssr414 microsatellite FC868724_ssr414:414..423. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL81_ORYSJ (Putative germin-like protein 8-1 OS=Oryza sativa subsp. japonica GN=Os08g0188900 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.309e-28
Identity = 72/183 (39.34%), Postives = 108/183 (59.02%), Query Frame = 3
Query:   54 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDF-KSTKLRDAGDTDKFPY-SSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN--RQVFQVMLKAGEVCVFPRGLLHFGFNVG-YEFATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRKFISI 584
            LQD C  D      + +NG  CK+P  + A DF K+  L    DT      S++TL+   + PGLNTLG+S+ R D    G+  PHTHPRA+E+  V +G +  GFV +N   ++F  +L  G+V VFP+GL+HF FN+  ++ A   S ++SQNPG+++I++A F     I DD++ K   +
Sbjct:   29 LQDFCVADLNS--AVRVNGFACKNPTNVSADDFFKAAMLDKPRDTAVNKVGSNITLINVMEIPGLNTLGISIVRVDYAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNPDNKLFSKVLNKGDVFVFPKGLIHFQFNLDPHKPAIATSAISSQNPGIITIANAVFRSNPPISDDILAKAFQV 209          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL14_ARATH (Germin-like protein subfamily 1 member 4 OS=Arabidopsis thaliana GN=At3g04180 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.015e-28
Identity = 70/174 (40.23%), Postives = 97/174 (55.75%), Query Frame = 3
Query:   54 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR---QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 566
            LQD C   T +   +++NG  CK P R+  +DF ++ L   G+T   P +  T++     PGLNTLG+ +AR D    G+  PHTHPR S++  V KG +  GFV +N     +F  +L  G+V VFP+GL+HF  N+G   A V S   SQ+PG + I DA F     ID  V
Sbjct:   30 LQDYCVA-TNETNGVYVNGEFCKDPKRVTTNDFYTSGLNVPGNTIIGPGARNTVVDVERLPGLNTLGVDIARYDFAPGGLDPPHTHPRGSQIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIHFHANIGETNAVVISAGGSQDPGRIIIGDAVFGSKPLIDPKV 202          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL52_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.938e-28
Identity = 76/197 (38.58%), Postives = 107/197 (54.31%), Query Frame = 3
Query:   42 DFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRKFISISALDE*SIRNVTLPK 629
            D D LQDIC  D T    + +NG  CK+   +   DF    L  AG+T+    S +T       PGLNTLG+S++R D    G+  PHTHPRA+EM+FV +G +  GF+ T  +++   + AG+V VFPRGLLHF  N G   A V S  NSQ PG  S++   F+    + D ++ K   +   +   I++   PK
Sbjct:   27 DPDLLQDICVADLTS--AVKVNGFACKAA--VTEDDFYFKGLAAAGNTNNTYGSVVTGANVEKLPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMVFVLQGTLDVGFITTANKLYTKTISAGDVFVFPRGLLHFQKNNGDTPAAVISAFNSQLPGTQSLAMTLFAASPEVPDGVLTKAFQVGTKEVEKIKSRLAPK 219          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL22_ARATH (Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana GN=At1g02335 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.143e-28
Identity = 73/181 (40.33%), Postives = 98/181 (54.14%), Query Frame = 3
Query:    6 IICFTCI---GFRRADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFS 539
            II  +CI     R  D D LQD+C  D  K     +NG PCK    I  SDF    +      +    S++T       PGLNTL +S+AR D    G+  PHTHPRA+E+++V +G +  GF+ T  ++F   +K GEV VFPRGL+HF  N G   A+V S  NSQ PG  S++   F+
Sbjct:    9 IIALSCIMITSIRAYDPDALQDLCVAD--KSHGTKLNGFPCKETLNITESDFFFAGISKPAVINSTMGSAVTGANVEKIPGLNTLSVSLARIDYAPGGLNPPHTHPRATEVVYVLEGELEVGFITTANKLFTKTIKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAATLFA 187          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL31_ARATH (Germin-like protein subfamily 3 member 1 OS=Arabidopsis thaliana GN=GLP1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.773e-28
Identity = 69/164 (42.07%), Postives = 94/164 (57.32%), Query Frame = 3
Query:   51 NLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSD 542
            ++QD C  +  + +T    G PC  P  + A+DF  + L   G+T     +++T   AA FPGLN LGLS AR DL   G++  HTHP ASE+LFV  G + AGFV +   V+   LK G+V VFP+GLLHF  N G   A+     NS NPG+  +  A F++
Sbjct:   18 SVQDFCVANLKRAETPA--GYPCIRPIHVKATDFVFSGLGTPGNTTNIINAAVTPAFAAQFPGLNGLGLSTARLDLAPKGVIPMHTHPGASEVLFVLTGSITAGFVSSANAVYVQTLKPGQVMVFPQGLLHFQINAGKSSASAVVTFNSANPGLQILDFALFAN 179          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL89_ORYSJ (Germin-like protein 8-9 OS=Oryza sativa subsp. japonica GN=Os08g0189850 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.496e-27
Identity = 71/179 (39.66%), Postives = 98/179 (54.75%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV--DTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG-YEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 566
            +D   LQD C  D  K   + +NG  C  P  + A  F    + D         S++TL+     PGLNTLG+S+AR D    G   PHTHPRA+E+L V +G +  GFV  + N  +F  +L  G+V VFP GL+HF FN   ++ A   + L+SQNPGV++I++A F     I D V
Sbjct:   23 SDPSPLQDFCVAD--KHSPVLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLHVGFVTSNPNNTLFSKVLNKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGVITIANAVFGSKPPISDEV 199          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL88_ORYSJ (Germin-like protein 8-8 OS=Oryza sativa subsp. japonica GN=Os08g0189700 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.496e-27
Identity = 70/179 (39.11%), Postives = 97/179 (54.19%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV--DTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG-YEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 566
            +D   LQD C  D  K   + +NG  C  P  + A  F    + D         S++TL+     PGLNTLG+S+AR D    G   PHTHPRA+E+L V +G +  GFV  + N  +F  +L  G+V VFP GL+HF FN   ++ A   + L+SQNPG ++I++A F     I D V
Sbjct:   23 SDPSPLQDFCVAD--KHSPVLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDKV 199          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL86_ORYSJ (Germin-like protein 8-6 OS=Oryza sativa subsp. japonica GN=Os08g0189500 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.496e-27
Identity = 70/179 (39.11%), Postives = 98/179 (54.75%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV--DTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG-YEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 566
            +D   LQD C  D  +   + +NG  C  P  + A  F    + D         S++TL+     PGLNTLG+S+AR D    G   PHTHPRA+E+L V +G +  GFV  + N  +F  +LK G+V VFP GL+HF FN   ++ A   + L+SQNPG ++I++A F     I D V
Sbjct:   24 SDPSPLQDFCVAD--EHSPVLVNGFACLDPKHVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLKKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEV 200          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL38_ORYSJ (Germin-like protein 3-8 OS=Oryza sativa subsp. japonica GN=Os03g0804700 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.496e-27
Identity = 74/193 (38.34%), Postives = 98/193 (50.78%), Query Frame = 3
Query:    6 IICFTCIGFRRADFDNLQDICPT------DTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 566
            ++  TCI    AD + +QD C        D          G PCK    + + DF    L  A DTD     ++T   A  FPGLNTLG+S+ R DL   G+   H+HPRA+E++ V  G V+AGFV T  + +  +L  GE  V PRG++HF +NVG   A V +  NSQ PGVV+     F     I D V
Sbjct:   18 VLASTCI----ADPEPVQDFCVAVVPRAGDAAAAACPAYPGFPCKPASTVVSDDFFFAGLAVASDTDNRFGFNVTAANAETFPGLNTLGVSIGRVDLAPGGVNPLHSHPRATELIHVVAGRVLAGFVSTAGEFYSKVLGEGETFVVPRGMIHFQYNVGGVAAQVITAFNSQMPGVVAAGSTLFGSDPEIPDAV 206          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL87_ORYSJ (Germin-like protein 8-7 OS=Oryza sativa subsp. japonica GN=GER6 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.954e-27
Identity = 71/186 (38.17%), Postives = 101/186 (54.30%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV--DTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG-YEFATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRKFISI 584
            +D   LQD C  D  K   + +NG  C  P  + A  F    + D         S++TL+     PGLNTLG+S+AR D    G   PHTHPRA+E+L V +G +  GFV  + N  +F  +L  G+V VFP GL+HF FN   ++ A   + L+SQNPG ++I++A F     I DD++ K   +
Sbjct:   24 SDPSPLQDFCVAD--KHSPVLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVALAALSSQNPGAITIANAVFGSKPPISDDILAKAFQV 207          
The following BLAST results are available for this feature:
BLAST of FC868724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL81_ORYSJ2.309e-2839.34Putative germin-like protein 8-1 OS=Oryza sativa s... [more]
GL14_ARATH3.015e-2840.23Germin-like protein subfamily 1 member 4 OS=Arabid... [more]
GL52_ORYSJ3.938e-2838.58Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL22_ARATH5.143e-2840.33Germin-like protein subfamily 2 member 2 OS=Arabid... [more]
GL31_ARATH8.773e-2842.07Germin-like protein subfamily 3 member 1 OS=Arabid... [more]
GL89_ORYSJ1.496e-2739.66Germin-like protein 8-9 OS=Oryza sativa subsp. jap... [more]
GL88_ORYSJ1.496e-2739.11Germin-like protein 8-8 OS=Oryza sativa subsp. jap... [more]
GL86_ORYSJ1.496e-2739.11Germin-like protein 8-6 OS=Oryza sativa subsp. jap... [more]
GL38_ORYSJ1.496e-2738.34Germin-like protein 3-8 OS=Oryza sativa subsp. jap... [more]
GL87_ORYSJ1.954e-2738.17Germin-like protein 8-7 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC31004A06EF AbioticL1 Citrus clementina cDNA clone C31004A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868724 ID=FC868724; Name=FC868724; organism=Citrus clementina; type=EST; length=661bp
TGTACATAATCTGCTTCACTTGCATTGGCTTCCGCCGGGCAGATTTTGAT
AATCTTCAGGATATCTGCCCAACTGATACAACTAAGAAACAAACCATTTT
CATTAATGGTTTGCCATGCAAGAGTCCAGACCGCATATTTGCTTCGGATT
TCAAGTCCACGAAACTAAGAGATGCCGGCGACACAGATAAATTTCCCTAT
TCCTCATTGACCCTCCTCACTGCTGCAGATTTCCCAGGCCTTAACACTCT
TGGCCTTTCCGTTGCTAGAACTGACCTTGATGTGGATGGCATGGTGGTGC
CTCATACTCACCCTAGAGCCTCAGAGATGCTCTTCGTTTTCAAAGGTGTT
GTGATTGCTGGTTTTGTTGACACCAACAGACAGGTTTTCCAGGTAATGCT
TAAAGCAGGAGAAGTGTGTGTGTTTCCCAGGGGTCTGCTACACTTCGGCT
TTAACGTTGGTTATGAGTTCGCAACTGTTTTTTCAGTGCTAAACAGCCAG
AATCCTGGGGTGGTCAGCATCAGTGATGCCGCGTTCTCCGATTTCGATAC
CATTGACGACCTTGTGAGAAAATTCATTTCAATTTCTGCGTTGGACGAAT
AGAGTATCAGAAATGTCACACTTCCNAAGATTTACAAGCTTAAAATCACG
AAACACCACAT
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