FC868724

Overview
NameFC868724
Unique NameFC868724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL13_ARATH (Germin-like protein subfamily 1 member 3 OS=Arabidopsis thaliana GN=At3g04170 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.954e-27
Identity = 69/171 (40.35%), Postives = 96/171 (56.14%), Query Frame = 3
Query:   54 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV---DTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTID 557
            LQD C     +K  +F+NG  CK P  + + DF ++ L   G+T+K   S    +  A+ PGLNTLG+ +AR D    G++ PH HPRASE++ V KG ++ GFV   D N  +F  +L  G+V V P GL+ F  N+G   A     + SQNPG +S+ DA F     ID
Sbjct:   30 LQDYCVA-VPEKNGVFVNGEFCKDPKLVTSDDFFASGLNIPGNTNKRLGS---FVNPANIPGLNTLGVGIARIDFAPGGLIPPHIHPRASEIILVIKGKLLVGFVSSNDYNYTLFSKILYPGDVFVHPIGLVQFHANIGKTNAVAIGAVGSQNPGYISVGDAVFGSKPPID 196          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL121_ORYSJ (Germin-like protein 12-1 OS=Oryza sativa subsp. japonica GN=Os12g0154700 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.954e-27
Identity = 74/186 (39.78%), Postives = 104/186 (55.91%), Query Frame = 3
Query:   54 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDF-KSTKLRDAGDTDKFPY-SSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-----QVFQVMLKAGEVCVFPRGLLHFGFNVGYEF-ATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRKFISI 584
            LQD C  D  +   + +NG PCK    +   DF     L    DT K    S++TL+      GLNTLG+S+AR D    G   PHTHPRA+E+L VF+G +  GFV +N+     ++F   L  G+V VFP+GL+HF FN  Y+  A   + L+SQNPG ++I++A F     I DD++ K   +
Sbjct:   28 LQDFCVAD--RNSPVRVNGFPCKDAKDVNVDDFFLEANLDKPMDTTKSKAGSNVTLINVMKLTGLNTLGISMARIDYAPKGQNPPHTHPRATEILTVFEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSNPPISDDVLAKAFQV 211          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL116_ARATH (Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.954e-27
Identity = 66/164 (40.24%), Postives = 98/164 (59.76%), Query Frame = 3
Query:   54 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR---QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAF 536
            LQD C      K  +F+NG  CK P+R+ A DF  + L   G+T+    S++T +     PGLNT+G+S+ R D    G   PHTHPR SE+L + +G +  GFV +N+   ++F  +L  G+V VFP G++HF  N+G   A  F+ L+SQN GV++I++  F
Sbjct:   28 LQDFCVAIDDLKG-VFVNGRFCKDPERVDAKDFFFSGLNVPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQLNIGKIPAIAFAGLSSQNAGVITIANTVF 190          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL122_ORYSJ (Germin-like protein 12-2 OS=Oryza sativa subsp. japonica GN=Os12g0154800 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.552e-27
Identity = 74/191 (38.74%), Postives = 106/191 (55.50%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDF-KSTKLRDAGDTDKFPY-SSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-----QVFQVMLKAGEVCVFPRGLLHFGFNVGYEF-ATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRKFISI 584
            +D   LQD C  D  +   + +NG PCK    +   DF  +  L    DT K    S++TL+      GLNTLG+S+AR D    G   PHTHPRA+E+L V +G +  GFV +N+     ++F   L  G+V VFP+GL+HF FN  Y+  A   + L+SQNPG ++I++A F     I DD++ K   +
Sbjct:   23 SDPSPLQDFCVAD--RNSPVHVNGFPCKDAKDVNVDDFFLAANLDKPMDTTKSKAGSNVTLINVMKLAGLNTLGISMARIDYAPKGQNPPHTHPRATEILTVLEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSNSPISDDVLAKAFQV 211          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL85_ORYSJ (Germin-like protein 8-5 OS=Oryza sativa subsp. japonica GN=Os08g0189400 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.334e-27
Identity = 73/180 (40.56%), Postives = 103/180 (57.22%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDF-KSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV--DTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG-YEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 566
            +D   LQD C  D      + +NG  C +P  + A  F K+ KL     T+K   S++TL+     PGLNTLG+S+AR D    G   PHTHPRA+E+L V +G +  GFV  + N  +F  +L  G+V VFP+GL+HF FN   ++ A   + L+SQNPG ++I++A F     I D V
Sbjct:   23 SDPSPLQDFCVADM--HSPVRVNGFACLNPMEVNADHFFKAAKLDTPRKTNKVG-SNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPQGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEV 199          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL810_ORYSJ (Germin-like protein 8-10 OS=Oryza sativa subsp. japonica GN=GLP2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.334e-27
Identity = 69/179 (38.55%), Postives = 97/179 (54.19%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV--DTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG-YEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLV 566
            +D   LQD C  D      + +NG  C  P  + A  F    + D         S++TL+     PGLNTLG+S+AR D    G   PHTHPRA+E+L V +G +  GFV  + N  +F  +L  G+V VFP GL+HF FN   ++ A   + L+SQNPG ++I++A F     I D+V
Sbjct:   23 SDPSPLQDFCVADM--HSPVLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDIV 199          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL12_ARATH (Putative germin-like protein subfamily 1 member 2 OS=Arabidopsis thaliana GN=At3g04150 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.334e-27
Identity = 75/195 (38.46%), Postives = 103/195 (52.82%), Query Frame = 3
Query:   42 DFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV---DTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFISISALDE*SIRNV 617
            D + LQD C   T     +F+NG  CK P  + A+DF  + L   G+T     +S+T +     PGLNTLG+++AR D    G + PH HPRAS+++ V KG +  GFV   D N  +F  +L  G+V  FP GL+ F  N G   A    V+ SQ+PGV+ I DA F     ID   +      ALD   +R+V
Sbjct:   26 DPNPLQDYCVA-TNGTNRVFVNGKFCKDPKLVTANDFFYSGLNIPGNTSNRLGASVTDVDVRRIPGLNTLGIAIARLDFAPGGQLPPHIHPRASQIILVLKGQLSVGFVSSNDYNYTLFSKILYPGDVFAFPIGLVQFHANTGKTHAVAIGVVGSQDPGVIPIGDAVFGSNPLIDP--KLLAKAFALDVNIVRHV 217          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL120_ARATH (Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.334e-27
Identity = 67/164 (40.85%), Postives = 97/164 (59.15%), Query Frame = 3
Query:   54 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR---QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAF 536
            LQD C      K  +F+NG  CK P R+ A DF  + L   G+T+    S++T +     PGLNT+G+S+ R D    G   PHTHPR SE+L + +G +  GFV +N+   ++F  +L  G+V VFP G++HF  NVG   A  F+ L+SQN GV++I++  F
Sbjct:   28 LQDFCVAIDDLKG-VFVNGRFCKDPKRVDAKDFFFSGLNVPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVF 190          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL118_ARATH (Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.334e-27
Identity = 67/164 (40.85%), Postives = 97/164 (59.15%), Query Frame = 3
Query:   54 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR---QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAF 536
            LQD C      K  +F+NG  CK P R+ A DF  + L   G+T+    S++T +     PGLNT+G+S+ R D    G   PHTHPR SE+L + +G +  GFV +N+   ++F  +L  G+V VFP G++HF  NVG   A  F+ L+SQN GV++I++  F
Sbjct:   28 LQDFCVAIDDLKG-VFVNGRFCKDPKRVDAKDFFFSGLNMPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVF 190          
BLAST of FC868724 vs. ExPASy Swiss-Prot
Match: GL811_ORYSJ (Germin-like protein 8-11 OS=Oryza sativa subsp. japonica GN=Os08g0190100 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.354e-27
Identity = 71/186 (38.17%), Postives = 101/186 (54.30%), Query Frame = 3
Query:   39 ADFDNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLLTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN--RQVFQVMLKAGEVCVFPRGLLHFGFNVG-YEFATVFSVLNSQNPGVVSISDAAFSDFDTI-DDLVRKFISI 584
            +D   LQD C  D      + +NG  C +P  + A  F    + D         S++TL+     PGLNTLG+S+AR D    G   PHTHPRA+E+L V +G +  GFV +N   + F  +L  G+V VFP GL+HF FN   Y+ A   + L+SQNPG ++I++A F     I DD++ K   +
Sbjct:   23 SDPSPLQDFCVADM--HSPVLVNGFACLNPKDVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPDNKFFSKVLNKGDVFVFPVGLIHFQFNPNPYKPAVAIAALSSQNPGAITIANAVFGSKPPISDDVLAKAFQV 206          
The following BLAST results are available for this feature:
BLAST of FC868724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL13_ARATH1.954e-2740.35Germin-like protein subfamily 1 member 3 OS=Arabid... [more]
GL121_ORYSJ1.954e-2739.78Germin-like protein 12-1 OS=Oryza sativa subsp. ja... [more]
GL116_ARATH1.954e-2740.24Germin-like protein subfamily 1 member 16 OS=Arabi... [more]
GL122_ORYSJ2.552e-2738.74Germin-like protein 12-2 OS=Oryza sativa subsp. ja... [more]
GL85_ORYSJ3.334e-2740.56Germin-like protein 8-5 OS=Oryza sativa subsp. jap... [more]
GL810_ORYSJ3.334e-2738.55Germin-like protein 8-10 OS=Oryza sativa subsp. ja... [more]
GL12_ARATH3.334e-2738.46Putative germin-like protein subfamily 1 member 2 ... [more]
GL120_ARATH3.334e-2740.85Germin-like protein subfamily 1 member 20 OS=Arabi... [more]
GL118_ARATH3.334e-2740.85Germin-like protein subfamily 1 member 18 OS=Arabi... [more]
GL811_ORYSJ4.354e-2738.17Germin-like protein 8-11 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionC31004A06EF AbioticL1 Citrus clementina cDNA clone C31004A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868724 ID=FC868724; Name=FC868724; organism=Citrus clementina; type=EST; length=661bp
TGTACATAATCTGCTTCACTTGCATTGGCTTCCGCCGGGCAGATTTTGAT
AATCTTCAGGATATCTGCCCAACTGATACAACTAAGAAACAAACCATTTT
CATTAATGGTTTGCCATGCAAGAGTCCAGACCGCATATTTGCTTCGGATT
TCAAGTCCACGAAACTAAGAGATGCCGGCGACACAGATAAATTTCCCTAT
TCCTCATTGACCCTCCTCACTGCTGCAGATTTCCCAGGCCTTAACACTCT
TGGCCTTTCCGTTGCTAGAACTGACCTTGATGTGGATGGCATGGTGGTGC
CTCATACTCACCCTAGAGCCTCAGAGATGCTCTTCGTTTTCAAAGGTGTT
GTGATTGCTGGTTTTGTTGACACCAACAGACAGGTTTTCCAGGTAATGCT
TAAAGCAGGAGAAGTGTGTGTGTTTCCCAGGGGTCTGCTACACTTCGGCT
TTAACGTTGGTTATGAGTTCGCAACTGTTTTTTCAGTGCTAAACAGCCAG
AATCCTGGGGTGGTCAGCATCAGTGATGCCGCGTTCTCCGATTTCGATAC
CATTGACGACCTTGTGAGAAAATTCATTTCAATTTCTGCGTTGGACGAAT
AGAGTATCAGAAATGTCACACTTCCNAAGATTTACAAGCTTAAAATCACG
AAACACCACAT
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